MGE detailed information
MGE type: Conjugative plasmid MGE length: 89672 bp
Accession: NZ_CP055248 Location: 1..89672 Organism: Citrobacter freundii strain ZY198 Replicon: plasmid pZY-1
Accession: NZ_CP055248 Location: 1..89672 Organism: Citrobacter freundii strain ZY198 Replicon: plasmid pZY-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTH18_RS23945 () | 1797..2450 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| GTH18_RS23950 () | 2543..2800 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| GTH18_RS23955 () | 2733..3134 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| GTH18_RS23960 () | 3383..3798 | + | 416 | Protein_4 | IS1 family transposase IS1R | Transposase |
| GTH18_RS23965 () | 3834..4379 | - | 546 | Protein_5 | Tn3 family transposase TnpA_Tn3 | Transposase |
| GTH18_RS23970 () | 4445..5149 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| GTH18_RS23975 () | 5185..6297 | + | 1113 | WP_172690575.1 | IS91 family transposase ISVsa3 | Transposase |
| GTH18_RS23980 () | 6328..7212 | + | 885 | WP_021598067.1 | DUF3363 domain-containing protein | - |
| GTH18_RS23985 () | 7429..8643 | + | 1215 | WP_023300759.1 | Bicyclomycin resistance protein | ARG |
| GTH18_RS23990 () | 8671..8976 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| GTH18_RS23995 () | 9088..9276 | + | 189 | Protein_11 | IS91 family transposase | - |
| GTH18_RS24000 () | 9243..10442 | - | 1200 | WP_032153701.1 | Tetracycline resistance protein, class C | ARG |
| GTH18_RS24005 () | 10548..11198 | + | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| GTH18_RS24010 () | 11230..11472 | - | 243 | WP_000844627.1 | transposase | - |
| GTH18_RS24015 () | 11778..12614 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| GTH18_RS24020 () | 12614..13417 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| GTH18_RS24025 () | 13478..14293 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| GTH18_RS24030 () | 14623..14799 | + | 177 | WP_000954592.1 | Arm DNA-binding domain-containing protein | - |
| GTH18_RS24035 () | 14981..15985 | - | 1005 | WP_000427619.1 | IS110 family transposase IS5075 | Transposase |
| GTH18_RS24040 () | 16064..17830 | - | 1767 | Protein_20 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| GTH18_RS24045 () | 17882..18058 | - | 177 | Protein_21 | IS6 family transposase IS26 | Transposase |
| GTH18_RS24050 () | 18047..18850 | + | 804 | Protein_22 | Mobilization protein A | Relaxase |
| GTH18_RS24055 () | 18863..19447 | + | 585 | WP_023281055.1 | mobilization protein MobX | - |
| GTH18_RS24060 () | 19490..22126 | - | 2637 | WP_023281054.1 | DEAD/DEAH box helicase family protein | - |
| GTH18_RS24065 () | 22131..24179 | - | 2049 | WP_023281053.1 | site-specific DNA-methyltransferase | - |
| GTH18_RS24070 () | 24337..24486 | - | 150 | WP_152930637.1 | hypothetical protein | - |
| GTH18_RS24075 () | 24465..24914 | - | 450 | WP_023281052.1 | hypothetical protein | - |
| GTH18_RS24080 () | 24922..25116 | - | 195 | Protein_28 | replication initiation protein | - |
| GTH18_RS24085 () | 25225..25929 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| GTH18_RS24090 () | 25939..26409 | + | 471 | WP_049824851.1 | TetR family transcriptional regulator | - |
| GTH18_RS24095 () | 26429..27217 | + | 789 | WP_014839978.1 | winged helix-turn-helix domain-containing protein | - |
| GTH18_RS24100 () | 27217..27735 | + | 519 | WP_014839979.1 | hypothetical protein | - |
| GTH18_RS24105 () | 27740..28156 | - | 417 | WP_014839980.1 | Glutathione transferase FosA | ARG |
| GTH18_RS24110 () | 28542..29246 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| GTH18_RS24115 () | 29296..30039 | + | 744 | Protein_35 | Beta-lactamase TEM | ARG |
| GTH18_RS24120 () | 30298..30774 | + | 477 | WP_013023839.1 | WbuC family cupin fold metalloprotein | - |
| GTH18_RS24125 () | 30821..31696 | - | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| GTH18_RS24130 () | 32118..32822 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| GTH18_RS24135 () | 32888..32953 | + | 66 | Protein_39 | IS1 family transposase | - |
| GTH18_RS24140 () | 34402..34636 | + | 235 | Protein_40 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GTH18_RS24145 () | 34764..35045 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| GTH18_RS24150 () | 35168..35518 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| GTH18_RS24155 () | 35521..36483 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| GTH18_RS24160 () | 36630..36923 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| GTH18_RS24165 () | 37000..37683 | + | 684 | WP_000085883.1 | DNA methylase | - |
| GTH18_RS24170 () | 37684..37905 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| GTH18_RS24175 () | 37919..38353 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| GTH18_RS24180 () | 38404..39180 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| GTH18_RS24185 () | 39598..40023 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| GTH18_RS24190 () | 40070..40492 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| GTH18_RS24195 () | 40489..40680 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| GTH18_RS24200 () | 41718..41948 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| GTH18_RS24205 () | 42000..43361 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| GTH18_RS24210 () | 43408..43971 | + | 564 | WP_015059007.1 | class I SAM-dependent methyltransferase | - |
| GTH18_RS24215 () | 44057..44524 | - | 468 | Protein_55 | hypothetical protein | - |
| GTH18_RS24220 () | 44826..45353 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| GTH18_RS24225 () | 45411..45644 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| GTH18_RS24230 () | 45705..47728 | + | 2024 | Protein_58 | ParB/RepB/Spo0J family partition protein | - |
| GTH18_RS24235 () | 47797..48231 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| GTH18_RS24240 () | 48228..48947 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| - () | 48959..49183 | + | 225 | NuclAT_0 | - | - |
| - () | 48959..49183 | + | 225 | NuclAT_0 | - | - |
| - () | 48959..49183 | + | 225 | NuclAT_0 | - | - |
| - () | 48959..49183 | + | 225 | NuclAT_0 | - | - |
| GTH18_RS24245 () | 49227..49385 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| GTH18_RS24250 () | 50282..50578 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| GTH18_RS24255 () | 50689..51510 | + | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| GTH18_RS24260 () | 51807..52454 | - | 648 | WP_015059008.1 | hypothetical protein | VF |
| GTH18_RS24265 () | 52731..53114 | + | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| GTH18_RS24270 () | 53305..53991 | + | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| GTH18_RS24275 () | 54085..54312 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| GTH18_RS24280 () | 54346..54711 | + | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| GTH18_RS24285 () | 54726..55037 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| GTH18_RS24290 () | 55059..55625 | + | 567 | WP_000399794.1 | type IV conjugative transfer system protein TraE | - |
| GTH18_RS24295 () | 55636..56340 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| GTH18_RS24300 () | 56340..57767 | + | 1428 | WP_032297072.1 | conjugal transfer protein TraB | - |
| GTH18_RS24305 () | 57757..58347 | + | 591 | WP_000002778.1 | conjugal transfer protein TraP | - |
| GTH18_RS24310 () | 58301..58531 | + | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| GTH18_RS24315 () | 58543..58794 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| GTH18_RS24320 () | 58791..59306 | + | 516 | WP_000809902.1 | type IV conjugative transfer system lipoprotein TraV | - |
| GTH18_RS24325 () | 59441..59662 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| GTH18_RS24330 () | 59822..62449 | + | 2628 | WP_112929298.1 | type IV secretion system protein TraC | - |
| GTH18_RS24335 () | 62446..62832 | + | 387 | WP_000214082.1 | type-F conjugative transfer system protein TrbI | - |
| GTH18_RS24340 () | 62829..63461 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| GTH18_RS24345 () | 63458..64450 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| GTH18_RS24350 () | 64477..64785 | + | 309 | WP_000412447.1 | hypothetical protein | - |
| GTH18_RS24355 () | 64848..65369 | + | 522 | WP_015059014.1 | hypothetical protein | - |
| GTH18_RS24360 () | 65396..66034 | + | 639 | WP_000087532.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| GTH18_RS24365 () | 66031..66402 | + | 372 | WP_000056336.1 | hypothetical protein | - |
| GTH18_RS24370 () | 66428..66850 | + | 423 | WP_001229309.1 | HNH endonuclease | - |
| GTH18_RS24375 () | 66847..68697 | + | 1851 | WP_015059015.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| GTH18_RS24380 () | 68724..68981 | + | 258 | WP_000864320.1 | conjugal transfer protein TrbE | - |
| GTH18_RS24385 () | 68974..69717 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| GTH18_RS24390 () | 69833..70114 | + | 282 | WP_000549793.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| GTH18_RS24395 () | 70101..70646 | + | 546 | WP_000059817.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| GTH18_RS24400 () | 70576..70950 | + | 375 | WP_071776752.1 | P-type conjugative transfer protein TrbJ | - |
| GTH18_RS24405 () | 70904..71296 | + | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| GTH18_RS24410 () | 71283..72656 | + | 1374 | WP_000944325.1 | conjugal transfer protein TraH | - |
| GTH18_RS24415 () | 72653..75469 | + | 2817 | WP_015059018.1 | conjugal transfer mating pair stabilization protein TraG | - |
| GTH18_RS24420 () | 75502..76023 | + | 522 | WP_000632668.1 | conjugal transfer entry exclusion protein TraS | - |
| GTH18_RS24425 () | 76048..76779 | + | 732 | WP_021559024.1 | complement resistance protein TraT | - |
| GTH18_RS24430 () | 76982..77719 | + | 738 | WP_015059020.1 | hypothetical protein | - |
| GTH18_RS24435 () | 77770..80013 | + | 2244 | WP_072646483.1 | type IV conjugative transfer system coupling protein TraD | - |
| GTH18_RS24440 () | 80013..85283 | + | 5271 | WP_061093447.1 | Multifunctional conjugation protein TraI | Relaxase |
| GTH18_RS24445 () | 85303..86049 | + | 747 | WP_000205770.1 | conjugal transfer pilus acetylase TraX | - |
| GTH18_RS24450 () | 86104..86664 | + | 561 | WP_000139328.1 | fertility inhibition protein FinO | - |
| GTH18_RS24455 () | 86796..86996 | + | 201 | WP_015059022.1 | hypothetical protein | - |
| GTH18_RS24460 () | 87382..87981 | + | 600 | WP_105906770.1 | hypothetical protein | - |
| GTH18_RS24465 () | 88145..88375 | + | 231 | WP_001736714.1 | hypothetical protein | - |
| - () | 88576..88635 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 88576..88635 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 88576..88635 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 88576..88635 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| GTH18_RS24470 () | 88680..88829 | + | 150 | WP_001312851.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| GTH18_RS24475 () | 89113..89361 | + | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|