MGE detailed information
MGE type: Conjugative plasmid MGE length: 91691 bp
Accession: NZ_CP055202 Location: 1..91691 Organism: Shigella flexneri strain STEFF_3 Replicon: plasmid unnamed3
Accession: NZ_CP055202 Location: 1..91691 Organism: Shigella flexneri strain STEFF_3 Replicon: plasmid unnamed3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ39_RS25360 (46) | 46..1077 | + | 1032 | WP_239637986.1 | plasmid replication initiator RepA | - |
| HUZ39_RS25365 (1981) | 1981..2265 | + | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| HUZ39_RS25370 (2265) | 2265..2540 | + | 276 | WP_000421259.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HUZ39_RS25375 (2646) | 2646..2927 | + | 282 | WP_001105066.1 | hypothetical protein | - |
| HUZ39_RS25380 (3119) | 3119..3385 | - | 267 | WP_000627832.1 | hypothetical protein | - |
| HUZ39_RS25385 (3426) | 3426..3572 | - | 147 | Protein_5 | Tn3 family transposase | - |
| HUZ39_RS25390 (3774) | 3774..4973 | - | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| HUZ39_RS25395 (4983) | 4983..5171 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| HUZ39_RS25400 (5290) | 5290..5715 | - | 426 | Protein_8 | recombinase family protein | - |
| HUZ39_RS25405 (6025) | 6025..6561 | + | 537 | Protein_9 | PAS domain-containing protein | - |
| HUZ39_RS25410 (6629) | 6629..7084 | - | 456 | Protein_10 | TonB-dependent receptor | - |
| HUZ39_RS25415 (7256) | 7256..8455 | - | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| HUZ39_RS25420 (8465) | 8465..8653 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| HUZ39_RS25425 (8770) | 8770..9414 | - | 645 | Protein_13 | TonB-dependent receptor | - |
| HUZ39_RS25430 (9471) | 9471..10439 | - | 969 | WP_013362812.1 | IS5 family transposase IS903B | Transposase |
| HUZ39_RS25435 (10474) | 10474..11349 | - | 876 | WP_063859949.1 | Beta-lactamase Toho-1 | ARG |
| HUZ39_RS25440 (11599) | 11599..11922 | - | 324 | Protein_16 | transposase | - |
| HUZ39_RS25445 (11936) | 11936..12283 | + | 348 | WP_058914894.1 | Methyl-accepting chemotaxis protein McpU | VF |
| HUZ39_RS25450 (12431) | 12431..12964 | - | 534 | WP_124770269.1 | hypothetical protein | - |
| HUZ39_RS25455 (13020) | 13020..13622 | - | 603 | WP_000521606.1 | ProQ/FINO family protein | - |
| HUZ39_RS25460 (13798) | 13798..14850 | - | 1053 | WP_000655519.1 | hypothetical protein | - |
| HUZ39_RS25465 (15063) | 15063..15653 | - | 591 | WP_001401589.1 | hypothetical protein | - |
| HUZ39_RS25470 (15653) | 15653..15907 | - | 255 | WP_000343106.1 | hypothetical protein | - |
| HUZ39_RS25475 (16475) | 16475..16888 | + | 414 | WP_021513973.1 | hypothetical protein | - |
| HUZ39_RS25480 (16890) | 16890..17669 | + | 780 | WP_001164198.1 | site-specific integrase | - |
| HUZ39_RS25485 (17849) | 17849..18493 | + | 645 | WP_001144036.1 | ParA family protein | - |
| HUZ39_RS25490 (18580) | 18580..18888 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| HUZ39_RS25495 (19302) | 19302..20282 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| HUZ39_RS25500 (20275) | 20275..20691 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| HUZ39_RS25505 (20693) | 20693..21967 | - | 1275 | WP_015058887.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HUZ39_RS25510 (21967) | 21967..22404 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HUZ39_RS25515 (22401) | 22401..22649 | - | 249 | WP_106108372.1 | DinI-like family protein | - |
| HUZ39_RS25520 (23067) | 23067..23969 | + | 903 | WP_001442863.1 | DUF1281 domain-containing protein | - |
| HUZ39_RS25525 (23973) | 23973..24278 | + | 306 | WP_015058890.1 | hypothetical protein | - |
| HUZ39_RS25530 (24354) | 24354..25037 | + | 684 | WP_021513974.1 | DNA methylase | - |
| HUZ39_RS25535 (25038) | 25038..25259 | + | 222 | WP_001104885.1 | hypothetical protein | - |
| HUZ39_RS25540 (25240) | 25240..25706 | + | 467 | Protein_36 | DUF1380 family protein | - |
| HUZ39_RS25545 (25757) | 25757..26527 | + | 771 | WP_209124595.1 | hypothetical protein | - |
| HUZ39_RS25550 (26944) | 26944..27369 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| HUZ39_RS25555 (27416) | 27416..27838 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| HUZ39_RS25560 (27835) | 27835..28026 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| HUZ39_RS25565 (28797) | 28797..29324 | + | 528 | WP_001276125.1 | single-stranded DNA-binding protein | - |
| HUZ39_RS25570 (29382) | 29382..29615 | + | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| HUZ39_RS25575 (29674) | 29674..31632 | + | 1959 | WP_124770271.1 | ParB/RepB/Spo0J family partition protein | - |
| HUZ39_RS25580 (31687) | 31687..32121 | + | 435 | WP_000845898.1 | conjugation system SOS inhibitor PsiB | - |
| HUZ39_RS25585 (32118) | 32118..32837 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| HUZ39_RS25590 (32834) | 32834..33430 | + | 597 | WP_000978005.1 | hypothetical protein | - |
| HUZ39_RS25595 (33893) | 33893..34393 | + | 501 | WP_000117627.1 | antirestriction protein ArdA | - |
| HUZ39_RS25600 (35122) | 35122..35556 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| HUZ39_RS25605 (35649) | 35649..35915 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| HUZ39_RS25610 (35980) | 35980..36870 | + | 891 | WP_000038399.1 | Recombination-promoting nuclease RpnA | VF |
| HUZ39_RS25615 (36933) | 36933..37127 | + | 195 | WP_001496986.1 | hypothetical protein | - |
| HUZ39_RS25620 (37158) | 37158..37409 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| HUZ39_RS25625 (37990) | 37990..38838 | + | 849 | WP_167650131.1 | DUF4942 domain-containing protein | - |
| HUZ39_RS25630 (38924) | 38924..39259 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HUZ39_RS25635 (39493) | 39493..39825 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| HUZ39_RS25640 (39836) | 39836..42535 | + | 2700 | WP_001306778.1 | Protein TraI | Relaxase |
| HUZ39_RS25645 (42572) | 42572..44863 | - | 2292 | WP_021497839.1 | F-type conjugative transfer protein TrbC | - |
| HUZ39_RS25650 (44856) | 44856..45926 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| HUZ39_RS25655 (45945) | 45945..47153 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (47333) | 47333..47395 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (47333) | 47333..47395 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (47333) | 47333..47395 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (47333) | 47333..47395 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| HUZ39_RS25660 (47445) | 47445..47597 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| HUZ39_RS25665 (47669) | 47669..47920 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| HUZ39_RS26135 (48419) | 48419..48514 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| HUZ39_RS25675 (48579) | 48579..48755 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| HUZ39_RS25680 (49087) | 49087..49296 | + | 210 | WP_000062602.1 | HEAT repeat domain-containing protein | - |
| HUZ39_RS25685 (49368) | 49368..50030 | - | 663 | WP_000644792.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HUZ39_RS25690 (50095) | 50095..52263 | - | 2169 | WP_077250315.1 | DotA/TraY family protein | - |
| HUZ39_RS25695 (52360) | 52360..52944 | - | 585 | WP_001037996.1 | IncI1-type conjugal transfer protein TraX | - |
| HUZ39_RS25700 (52973) | 52973..54175 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| HUZ39_RS25705 (54142) | 54142..54756 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| HUZ39_RS25710 (54756) | 54756..57800 | - | 3045 | WP_001024776.1 | IncI1-type conjugal transfer protein TraU | - |
| HUZ39_RS25715 (57890) | 57890..58690 | - | 801 | WP_001164792.1 | IncI1-type conjugal transfer protein TraT | - |
| HUZ39_RS25720 (58674) | 58674..58862 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| HUZ39_RS25725 (58926) | 58926..59330 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| HUZ39_RS25730 (59381) | 59381..59908 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| HUZ39_RS25735 (59908) | 59908..60612 | - | 705 | WP_023155244.1 | IncI1-type conjugal transfer protein TraP | - |
| HUZ39_RS25740 (60612) | 60612..61901 | - | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| HUZ39_RS25745 (61904) | 61904..62887 | - | 984 | WP_021513963.1 | hypothetical protein | VF |
| HUZ39_RS25750 (62898) | 62898..63590 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| HUZ39_RS25755 (63587) | 63587..63934 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| HUZ39_RS25760 (63952) | 63952..67719 | - | 3768 | WP_006855639.1 | DUF5710 domain-containing protein | - |
| HUZ39_RS25765 (67809) | 67809..68360 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| HUZ39_RS25770 (68375) | 68375..68665 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| HUZ39_RS25775 (68662) | 68662..69810 | - | 1149 | WP_001024976.1 | putative protein YggR | VF |
| HUZ39_RS25780 (69807) | 69807..70625 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| HUZ39_RS25785 (70622) | 70622..71080 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| HUZ39_RS25790 (71475) | 71475..72059 | - | 585 | WP_124770274.1 | histidine phosphatase family protein | - |
| HUZ39_RS25795 (72119) | 72119..73321 | - | 1203 | WP_000976357.1 | conjugal transfer protein TraF | - |
| HUZ39_RS25800 (73407) | 73407..74231 | - | 825 | WP_015058912.1 | conjugal transfer protein TraE | - |
| HUZ39_RS25805 (74382) | 74382..75536 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| HUZ39_RS25810 (76450) | 76450..77775 | - | 1326 | WP_239637985.1 | hypothetical protein | VF |
| HUZ39_RS25815 (77775) | 77775..78431 | - | 657 | WP_001193551.1 | hypothetical protein | VF |
| HUZ39_RS25820 (78416) | 78416..78976 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| HUZ39_RS25825 (78986) | 78986..79600 | - | 615 | WP_000908228.1 | hypothetical protein | VF |
| HUZ39_RS25830 (79617) | 79617..80702 | - | 1086 | WP_001208803.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HUZ39_RS25835 (80715) | 80715..82268 | - | 1554 | WP_000362204.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HUZ39_RS25840 (82279) | 82279..82731 | - | 453 | WP_001247333.1 | hypothetical protein | VF |
| HUZ39_RS25845 (82718) | 82718..84013 | - | 1296 | WP_000752776.1 | type 4b pilus protein PilO2 | - |
| HUZ39_RS25850 (84006) | 84006..85688 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| HUZ39_RS25855 (85702) | 85702..86139 | - | 438 | WP_000539811.1 | hypothetical protein | VF |
| HUZ39_RS25860 (86139) | 86139..87206 | - | 1068 | WP_021513968.1 | hypothetical protein | VF |
| HUZ39_RS25865 (87958) | 87958..88212 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| HUZ39_RS25870 (88384) | 88384..89067 | - | 684 | WP_000213863.1 | hypothetical protein | - |
| HUZ39_RS25875 (89321) | 89321..89854 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| HUZ39_RS25880 (90296) | 90296..90583 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| HUZ39_RS25885 (90501) | 90501..90731 | - | 231 | WP_228772074.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|