NZ_CP0552001..137403

MGE detailed information

MGE type: Conjugative plasmid        MGE length: 137403 bp
Accession: NZ_CP055200        Location: 1..137403         Organism: Shigella flexneri strain STEFF_3       Replicon: plasmid unnamed1


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HUZ39_RS24005 (1) 1..978 + 978 WP_000361611.1 RepB family plasmid replication initiator protein -
HUZ39_RS24010 (1263) 1263..2003 - 741 WP_001066953.1 tyrosine-type recombinase/integrase -
HUZ39_RS24015 (2124) 2124..2319 - 196 Protein_2 serine/threonine protein kinase -
HUZ39_RS24020 (2406) 2406..2816 - 411 Protein_3 IS3 family transposase ISEhe3 Transposase
HUZ39_RS24025 (2879) 2879..3583 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
HUZ39_RS24030 (3637) 3637..4104 + 468 Protein_5 conjugal transfer protein -
HUZ39_RS24035 (4349) 4349..4465 + 117 WP_001814923.1 tetracycline resistance determinant leader peptide -
HUZ39_RS24040 (4481) 4481..6400 + 1920 WP_025989258.1 Tetracycline resistance protein TetM from transposon TnFO1 VF
HUZ39_RS24045 (6519) 6519..6686 + 168 WP_000336323.1 cysteine-rich KTR domain-containing protein -
HUZ39_RS24050 (6947) 6947..7579 + 633 WP_020802982.1 IS256 family transposase IS406 Transposase
HUZ39_RS24055 (7826) 7826..8158 - 333 WP_000800531.1 quaternary ammonium compound efflux SMR transporter QacL -
HUZ39_RS24060 (8281) 8281..9119 - 839 Protein_11 Streptomycin 3''-adenylyltransferase ARG
HUZ39_RS24065 (9212) 9212..10471 - 1260 WP_000095725.1 Bicyclomycin resistance protein ARG
HUZ39_RS24070 (10686) 10686..11524 - 839 Protein_13 Streptomycin 3''-adenylyltransferase ARG
HUZ39_RS24075 (11530) 11530..11820 - 291 WP_001336345.1 DUF1010 domain-containing protein -
HUZ39_RS24080 (11932) 11932..12429 - 498 WP_001083725.1 Dihydrofolate reductase ARG
HUZ39_RS24085 (12574) 12574..13587 + 1014 WP_000845039.1 IS91 family transposase ISAzo26 Transposase
HUZ39_RS24090 (13790) 13790..14140 + 351 WP_071830595.1 DUF3330 domain-containing protein -
HUZ39_RS24095 (14266) 14266..14826 + 561 WP_000147567.1 Tn3 family transposase TnpR_TnAs3 Transposase
HUZ39_RS24100 (14829) 14829..17780 + 2952 WP_015344976.1 Tn3 family transposase TnpA_TnAs3 Transposase
HUZ39_RS24105 (17714) 17714..18190 + 477 WP_223171565.1 hypothetical protein -
HUZ39_RS24110 (18275) 18275..18979 - 705 WP_001067784.1 IS6 family transposase IS1006 Transposase
HUZ39_RS24115 (19043) 19043..19873 + 831 Protein_22 IS91 family transposase ISVsa3 Transposase
HUZ39_RS24120 (19904) 19904..20788 + 885 WP_012728215.1 DUF3363 domain-containing protein -
HUZ39_RS24125 (21005) 21005..22219 + 1215 WP_058657119.1 Bicyclomycin resistance protein ARG
HUZ39_RS24130 (22247) 22247..22552 + 306 WP_001255015.1 HTH-type transcriptional regulator CynR VF
HUZ39_RS24135 (22664) 22664..22852 + 189 Protein_26 IS91 family transposase -
HUZ39_RS24140 (22819) 22819..23289 - 471 Protein_27 MFS transporter -
HUZ39_RS24145 (23353) 23353..24057 + 705 WP_001067858.1 IS6 family transposase IS15DI Transposase
HUZ39_RS24150 (24109) 24109..24426 + 318 Protein_29 recombinase family protein -
HUZ39_RS24155 (24530) 24530..25504 + 975 WP_012478345.1 IS30 family transposase ISApl1 Transposase
HUZ39_RS24160 (25681) 25681..26541 + 861 WP_021561477.1 Beta-lactamase TEM ARG
HUZ39_RS24165 (26799) 26799..27590 - 792 WP_000034420.1 Dihydropteroate synthase ARG
HUZ39_RS24170 (28059) 28059..28304 - 246 WP_001354008.1 GrpB family protein -
HUZ39_RS24175 (28342) 28342..29205 - 864 WP_000612791.1 SDR family oxidoreductase -
HUZ39_RS24180 (29351) 29351..29602 - 252 Protein_35 hypothetical protein -
HUZ39_RS24185 (29654) 29654..30358 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
HUZ39_RS24190 (30509) 30509..31324 + 816 WP_000018329.1 Aminoglycoside 3'-phosphotransferase ARG
HUZ39_RS24195 (31514) 31514..32218 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
HUZ39_RS24200 (32327) 32327..32584 - 258 WP_231363335.1 hypothetical protein -
HUZ39_RS24205 (32686) 32686..34347 - 1662 Protein_40 Tn3 family transposase TnpA_TnAs1 Transposase
HUZ39_RS24210 (34310) 34310..34744 + 435 WP_223963367.1 isochorismatase family cysteine hydrolase -
HUZ39_RS24215 (34882) 34882..35766 + 885 WP_000058717.1 EamA family transporter -
HUZ39_RS24220 (35798) 35798..36997 - 1200 WP_001493765.1 Tetracycline resistance protein, class C ARG
HUZ39_RS24225 (37103) 37103..37753 + 651 WP_001493764.1 tetracycline resistance transcriptional repressor TetR(A) -
HUZ39_RS24230 (37785) 37785..38027 - 243 WP_000844627.1 transposase -
HUZ39_RS24235 (38085) 38085..39599 - 1515 Protein_46 Tn3 family transposase TnpA_TnAs1 Transposase
HUZ39_RS24240 (39665) 39665..40369 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
HUZ39_RS24245 (40617) 40617..40904 + 288 WP_230071785.1 hypothetical protein -
HUZ39_RS24255 (42281) 42281..43096 + 816 WP_001043260.1 Dihydropteroate synthase ARG
HUZ39_RS24260 (43183) 43183..43425 + 243 Protein_51 phosphoglucosamine mutase -
HUZ39_RS24265 (43661) 43661..45154 - 1494 WP_015344975.1 IS91 family transposase ISVsa3 Transposase
HUZ39_RS24270 (45365) 45365..45589 - 225 WP_000743213.1 hypothetical protein -
HUZ39_RS24275 (45586) 45586..46296 - 711 WP_194433555.1 Tn3 family transposase TnpR_TnEc1 Transposase
HUZ39_RS24280 (46716) 46716..47621 + 906 WP_052259183.1 rRNA adenine N-6-methyltransferase ARG
HUZ39_RS24285 (47772) 47772..47951 + 180 Protein_56 helix-turn-helix domain-containing protein -
HUZ39_RS24290 (48016) 48016..48720 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
HUZ39_RS24295 (49015) 49015..50229 + 1215 WP_001532073.1 type II site-specific deoxyribonuclease -
HUZ39_RS24300 (50263) 50263..51696 - 1434 WP_001288435.1 DNA cytosine methyltransferase -
HUZ39_RS24305 (51790) 51790..52062 + 273 Protein_60 IS1 family transposase -
HUZ39_RS24310 (52319) 52319..53016 + 698 WP_095033700.1 IS1 family transposase IS1R Transposase
HUZ39_RS24315 (53137) 53137..53975 - 839 Protein_62 Streptomycin 3''-adenylyltransferase ARG
HUZ39_RS24320 (54121) 54121..54801 + 681 Protein_63 IS91 family transposase ISAzo26 Transposase
HUZ39_RS24325 (54866) 54866..55570 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
HUZ39_RS24330 (55636) 55636..56181 + 546 Protein_65 Tn3 family transposase TnpA_Tn3 Transposase
HUZ39_RS24335 (56217) 56217..56632 - 416 Protein_66 IS1-like element IS1B family transposase -
HUZ39_RS24340 (56881) 56881..57282 - 402 WP_001398199.1 type II toxin-antitoxin system toxin endoribonuclease PemK -
HUZ39_RS24345 (57215) 57215..57472 - 258 WP_000557619.1 type II toxin-antitoxin system antitoxin PemI -
HUZ39_RS24350 (57565) 57565..58218 - 654 WP_000616807.1 CPBP family intramembrane metalloprotease -
HUZ39_RS24355 (59032) 59032..60603 - 1572 WP_000381395.1 IS66 family transposase ISCro1 Transposase
HUZ39_RS24360 (60623) 60623..60970 - 348 WP_000624622.1 IS66 family transposase ISCro1 Transposase
HUZ39_RS24365 (60970) 60970..61647 - 678 WP_001682408.1 IS66 family transposase ISCro1 Transposase
HUZ39_RS24370 (61864) 61864..62721 - 858 WP_000130646.1 incFII family plasmid replication initiator RepA -
HUZ39_RS24375 (62714) 62714..62788 - 75 WP_001365705.1 RepA leader peptide Tap -
HUZ39_RS24380 (63026) 63026..63280 - 255 WP_000083830.1 replication regulatory protein RepA -
HUZ39_RS24385 (63520) 63520..64110 - 591 WP_000766807.1 DUF2726 domain-containing protein -
HUZ39_RS24390 (64148) 64148..64357 - 210 WP_001298565.1 hemolysin expression modulator Hha -
HUZ39_RS24395 (64403) 64403..64864 - 462 WP_001233838.1 thermonuclease family protein -
HUZ39_RS24400 (65109) 65109..65321 - 213 WP_001309245.1 ANR family transcriptional regulator -
HUZ39_RS24405 (65450) 65450..66010 - 561 WP_000139323.1 fertility inhibition protein FinO -
HUZ39_RS24410 (66113) 66113..66973 - 861 WP_000704523.1 putative protein YcjY VF
HUZ39_RS24415 (67032) 67032..67778 - 747 WP_000205725.1 conjugal transfer pilus acetylase TraX -
HUZ39_RS24420 (67798) 67798..73068 - 5271 WP_239637979.1 Multifunctional conjugation protein TraI Relaxase
HUZ39_RS24425 (73068) 73068..75257 - 2190 WP_017901267.1 type IV conjugative transfer system coupling protein TraD -
HUZ39_RS24430 (75308) 75308..76045 - 738 WP_000199905.1 hypothetical protein -
HUZ39_RS24435 (76248) 76248..76979 - 732 WP_000782451.1 conjugal transfer complement resistance protein TraT -
HUZ39_RS24440 (77028) 77028..77513 - 486 WP_000605870.1 hypothetical protein -
HUZ39_RS24445 (77529) 77529..80351 - 2823 WP_001007039.1 conjugal transfer mating-pair stabilization protein TraG -
HUZ39_RS24450 (80348) 80348..81721 - 1374 WP_000944331.1 conjugal transfer pilus assembly protein TraH -
HUZ39_RS24455 (81708) 81708..82100 - 393 WP_000660699.1 F-type conjugal transfer protein TrbF -
HUZ39_RS24460 (82081) 82081..82428 - 348 WP_001309242.1 P-type conjugative transfer protein TrbJ -
HUZ39_RS24465 (82358) 82358..82903 - 546 WP_000059831.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
HUZ39_RS24470 (82890) 82890..83174 - 285 WP_000624194.1 type-F conjugative transfer system pilin chaperone TraQ -
HUZ39_RS24475 (83293) 83293..83637 - 345 WP_000556796.1 conjugal transfer protein TrbA -
HUZ39_RS24480 (83651) 83651..84394 - 744 WP_001030371.1 type-F conjugative transfer system pilin assembly protein TraF -
HUZ39_RS24485 (84387) 84387..84644 - 258 WP_000864353.1 conjugal transfer protein TrbE -
HUZ39_RS24490 (84671) 84671..86521 - 1851 WP_000821856.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
HUZ39_RS24495 (86518) 86518..87156 - 639 WP_001080256.1 type-F conjugative transfer system pilin assembly protein TrbC -
HUZ39_RS24500 (87165) 87165..87470 - 306 WP_000224416.1 hypothetical protein -
HUZ39_RS24505 (87500) 87500..88492 - 993 WP_000830838.1 conjugal transfer pilus assembly protein TraU -
HUZ39_RS24510 (88489) 88489..89121 - 633 WP_001203728.1 type-F conjugative transfer system protein TraW -
HUZ39_RS24515 (89118) 89118..89504 - 387 WP_000214084.1 type-F conjugative transfer system protein TrbI -
HUZ39_RS24520 (89501) 89501..91312 - 1812 Protein_103 type IV secretion system protein TraC -
HUZ39_RS24525 (91502) 91502..93043 + 1542 WP_001298859.1 IS21 family transposase ISEc12 Transposase
HUZ39_RS24530 (93058) 93058..93804 + 747 WP_001016257.1 IS21 family transposase ISEc12 Transposase
HUZ39_RS24535 (93815) 93815..94717 - 903 Protein_106 TraC family protein -
HUZ39_RS24540 (94843) 94843..95190 - 348 WP_000836682.1 hypothetical protein -
HUZ39_RS24545 (95218) 95218..95436 - 219 WP_000556745.1 hypothetical protein -
HUZ39_RS24550 (95516) 95516..95998 - 483 WP_204084453.1 hypothetical protein -
HUZ39_RS24555 (95991) 95991..96404 - 414 WP_000549589.1 hypothetical protein -
HUZ39_RS24560 (96397) 96397..96618 - 222 WP_001278683.1 conjugal transfer protein TraR -
HUZ39_RS24565 (96753) 96753..97268 - 516 WP_000809881.1 type IV conjugative transfer system lipoprotein TraV -
HUZ39_RS24570 (97265) 97265..97585 - 321 WP_001057307.1 conjugal transfer protein TrbD -
HUZ39_RS24575 (97572) 97572..98138 - 567 WP_000896599.1 conjugal transfer pilus-stabilizing protein TraP -
HUZ39_RS24580 (98128) 98128..99579 - 1452 WP_000146675.1 F-type conjugal transfer pilus assembly protein TraB -
HUZ39_RS24585 (99579) 99579..100307 - 729 WP_001230772.1 type-F conjugative transfer system secretin TraK -
HUZ39_RS24590 (100294) 100294..100860 - 567 WP_000399780.1 type IV conjugative transfer system protein TraE -
HUZ39_RS24595 (100882) 100882..101193 - 312 WP_000012113.1 type IV conjugative transfer system protein TraL -
HUZ39_RS24600 (101208) 101208..101567 - 360 WP_001098992.1 type IV conjugative transfer system pilin TraA -
HUZ39_RS24605 (101600) 101600..101827 - 228 WP_000089263.1 conjugal transfer relaxosome protein TraY -
HUZ39_RS24610 (101964) 101964..102635 - 672 WP_000283561.1 conjugal transfer transcriptional regulator TraJ -
HUZ39_RS24615 (102829) 102829..103212 - 384 WP_001354030.1 conjugal transfer relaxosome DNA-binding protein TraM -
HUZ39_RS24620 (103547) 103547..104137 + 591 WP_000252683.1 hypothetical protein VF
HUZ39_RS24625 (104434) 104434..105255 - 822 WP_001234445.1 DUF932 domain-containing protein -
HUZ39_RS24630 (105366) 105366..105662 - 297 WP_001272251.1 hypothetical protein -
HUZ39_RS24635 (105962) 105962..106258 + 297 Protein_126 hypothetical protein -
HUZ39_RS24640 (106577) 106577..106702 - 126 WP_001372321.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
HUZ39_RS24645 (106644) 106644..106793 - 150 Protein_128 plasmid maintenance protein Mok -
HUZ39_RS24650 (106815) 106815..106994 + 180 WP_001309233.1 hypothetical protein -
- (106779) 106779..107003 - 225 NuclAT_0 - Antitoxin Detail
- (106779) 106779..107003 - 225 NuclAT_0 - Antitoxin Detail
- (106779) 106779..107003 - 225 NuclAT_0 - Antitoxin Detail
- (106779) 106779..107003 - 225 NuclAT_0 - Antitoxin Detail
HUZ39_RS24655 (107015) 107015..107734 - 720 WP_001276217.1 plasmid SOS inhibition protein A -
HUZ39_RS24660 (107731) 107731..108165 - 435 WP_000845953.1 conjugation system SOS inhibitor PsiB -
HUZ39_RS24665 (108234) 108234..110257 - 2024 Protein_132 ParB/RepB/Spo0J family partition protein -
HUZ39_RS24670 (110318) 110318..110551 - 234 WP_000006003.1 DUF905 family protein -
HUZ39_RS24675 (110609) 110609..111136 - 528 WP_000290834.1 single-stranded DNA-binding protein -
HUZ39_RS24680 (111438) 111438..111887 + 450 Protein_135 hypothetical protein -
HUZ39_RS24685 (111973) 111973..112536 - 564 WP_001298559.1 class I SAM-dependent methyltransferase -
HUZ39_RS24690 (112583) 112583..113944 - 1362 WP_000170695.1 DUF3560 domain-containing protein -
HUZ39_RS24695 (113996) 113996..114226 - 231 WP_000218642.1 hypothetical protein -
HUZ39_RS24700 (114743) 114743..114991 + 249 WP_077249352.1 hypothetical protein -
HUZ39_RS24705 (115264) 115264..115455 - 192 WP_001027516.1 hypothetical protein -
HUZ39_RS24710 (115452) 115452..115874 - 423 WP_000271753.1 DUF1380 family protein -
HUZ39_RS24715 (115921) 115921..116346 - 426 WP_001198928.1 antirestriction protein -
HUZ39_RS24720 (116763) 116763..117539 - 777 WP_001753849.1 hypothetical protein -
HUZ39_RS24725 (117590) 117590..118108 - 519 WP_123325260.1 DUF1380 family protein -
HUZ39_RS24730 (118038) 118038..118259 - 222 WP_001104873.1 hypothetical protein -
HUZ39_RS24735 (118260) 118260..118943 - 684 WP_000086185.1 DNA methylase -
HUZ39_RS24740 (119020) 119020..119331 - 312 WP_011254640.1 hypothetical protein -
HUZ39_RS24745 (119328) 119328..120230 - 903 WP_001348615.1 DUF1281 domain-containing protein -
HUZ39_RS24750 (121097) 121097..122068 - 972 WP_000817036.1 ParB/RepB/Spo0J family plasmid partition protein -
HUZ39_RS24755 (122068) 122068..123234 - 1167 WP_000772446.1 Sporulation initiation inhibitor protein Soj VF
HUZ39_RS24760 (123822) 123822..124577 - 756 WP_000852146.1 replication initiation protein RepE -
HUZ39_RS24765 (125351) 125351..126157 - 807 WP_000016982.1 site-specific integrase -
HUZ39_RS24770 (126158) 126158..126463 - 306 WP_001159868.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
HUZ39_RS24775 (126465) 126465..126683 - 219 WP_000813634.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin Detail
HUZ39_RS24780 (127275) 127275..127763 + 489 WP_011254646.1 hypothetical protein -
HUZ39_RS24785 (127797) 127797..128930 - 1134 WP_001542067.1 DUF3800 domain-containing protein -
HUZ39_RS24790 (129097) 129097..129870 - 774 WP_000905949.1 hypothetical protein -
HUZ39_RS24795 (129883) 129883..130383 - 501 WP_000528931.1 HEPN family nuclease -
HUZ39_RS24800 (130648) 130648..130878 + 231 WP_001261278.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin Detail
HUZ39_RS24805 (130875) 130875..131291 + 417 WP_001034046.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
HUZ39_RS24810 (131336) 131336..134671 - 3336 WP_239637978.1 pcar -
HUZ39_RS24815 (134778) 134778..135475 + 698 WP_223155668.1 IS1 family transposase IS1S Transposase
HUZ39_RS24820 (135655) 135655..136168 - 514 Protein_163 DUF4113 domain-containing protein -
HUZ39_RS24825 (136229) 136229..136333 - 105 Protein_164 AAA family ATPase -
HUZ39_RS24830 (136335) 136335..136658 - 324 Protein_165 IS21 family transposase IS21 Transposase

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance