MGE detailed information
MGE type: Mobilizable plasmid MGE length: 78847 bp
Accession: NZ_CP055197 Location: 1..78847 Organism: Shigella flexneri strain STEFF_10 Replicon: plasmid unnamed3
Accession: NZ_CP055197 Location: 1..78847 Organism: Shigella flexneri strain STEFF_10 Replicon: plasmid unnamed3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ40_RS24815 (HUZ40_24640) | 720..1425 | - | 706 | Protein_1 | IS6 family transposase IS15DII | Transposase |
| HUZ40_RS24820 (HUZ40_24645) | 1495..1968 | - | 474 | WP_004201280.1 | Dihydrofolate reductase type 1 | ARG |
| HUZ40_RS24825 (HUZ40_24650) | 2124..3137 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| HUZ40_RS24830 (HUZ40_24655) | 3197..3901 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HUZ40_RS24835 (HUZ40_24660) | 4043..5119 | + | 1077 | WP_072146639.1 | Methyl-accepting chemotaxis protein McpQ | VF |
| HUZ40_RS24840 (HUZ40_24665) | 5308..7617 | + | 2310 | Protein_6 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| HUZ40_RS24845 (HUZ40_24670) | 7641..7907 | + | 267 | Protein_7 | Ref family recombination enhancement nuclease | - |
| HUZ40_RS24850 (HUZ40_24675) | 8096..8737 | + | 642 | WP_016246529.1 | hypothetical protein | - |
| HUZ40_RS24855 (HUZ40_24680) | 8835..9845 | - | 1011 | WP_032219104.1 | DUF2971 domain-containing protein | - |
| HUZ40_RS24860 (HUZ40_24685) | 9928..10176 | - | 249 | WP_000747846.1 | hypothetical protein | - |
| HUZ40_RS24865 (HUZ40_24690) | 10173..10613 | - | 441 | WP_000224043.1 | hypothetical protein | - |
| HUZ40_RS24870 | 10647..12769 | - | 2123 | Protein_12 | helicase | - |
| HUZ40_RS24875 (HUZ40_24705) | 13008..13421 | + | 414 | Protein_13 | collagenase-like protease | - |
| HUZ40_RS24880 (HUZ40_24710) | 13526..13654 | - | 129 | WP_001164804.1 | DUF2474 domain-containing protein | - |
| HUZ40_RS24885 (HUZ40_24715) | 13654..14664 | - | 1011 | WP_000510495.1 | cytochrome d ubiquinol oxidase subunit II | - |
| HUZ40_RS24890 (HUZ40_24720) | 14664..16064 | - | 1401 | WP_032185977.1 | cytochrome ubiquinol oxidase subunit I | - |
| HUZ40_RS24895 (HUZ40_24725) | 16293..16562 | - | 270 | Protein_17 | hypothetical protein | - |
| HUZ40_RS24900 (HUZ40_24730) | 17145..17396 | + | 252 | WP_001139206.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| HUZ40_RS24905 (HUZ40_24735) | 17393..17680 | + | 288 | WP_000222771.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HUZ40_RS24910 | 18048..18161 | - | 114 | Protein_20 | alkaline phosphatase | - |
| HUZ40_RS24915 (HUZ40_24745) | 18160..18365 | + | 206 | Protein_21 | hypothetical protein | - |
| HUZ40_RS24920 (HUZ40_24750) | 18540..22073 | - | 3534 | WP_094317721.1 | Outer membrane protein IcsA autotransporter | VF |
| HUZ40_RS24925 (HUZ40_24755) | 22657..22875 | - | 219 | Protein_23 | IS91 family transposase | - |
| HUZ40_RS24930 (HUZ40_24760) | 22923..23829 | + | 907 | Protein_24 | IS3 family transposase ISEc52 | Transposase |
| HUZ40_RS24935 (HUZ40_24765) | 23822..24244 | - | 423 | Protein_25 | IncHI-type conjugal transfer protein TrhH | - |
| HUZ40_RS24940 (HUZ40_24770) | 24234..24989 | - | 756 | WP_229266314.1 | conjugal transfer protein TraF | - |
| HUZ40_RS24950 (HUZ40_24780) | 25742..26056 | - | 315 | WP_223438619.1 | hypothetical protein | - |
| HUZ40_RS24955 (HUZ40_24785) | 26843..27181 | - | 339 | WP_223656872.1 | hypothetical protein | - |
| HUZ40_RS24960 (HUZ40_24790) | 27184..27714 | - | 531 | WP_077478204.1 | hypothetical protein | - |
| HUZ40_RS24965 (HUZ40_24795) | 28740..29225 | + | 486 | WP_000071636.1 | conjugative transfer protein MobI(A/C) | - |
| HUZ40_RS24970 (HUZ40_24800) | 29222..29944 | + | 723 | WP_000133023.1 | hypothetical protein | - |
| HUZ40_RS24975 (HUZ40_24805) | 29955..30770 | + | 816 | WP_223656871.1 | hypothetical protein | Relaxase |
| HUZ40_RS24985 (HUZ40_24815) | 31646..32662 | - | 1017 | WP_047668699.1 | hypothetical protein | - |
| HUZ40_RS24990 (HUZ40_24820) | 32818..33114 | - | 297 | Protein_36 | DUF1643 domain-containing protein | - |
| HUZ40_RS24995 (HUZ40_24825) | 33243..34058 | - | 816 | WP_112918727.1 | hypothetical protein | - |
| HUZ40_RS25000 (HUZ40_24830) | 34068..35657 | - | 1590 | WP_112918728.1 | hypothetical protein | - |
| HUZ40_RS25005 (HUZ40_24835) | 35717..37423 | - | 1707 | WP_094318215.1 | hypothetical protein | - |
| HUZ40_RS25010 (HUZ40_24840) | 37649..38650 | - | 1002 | WP_000038866.1 | ParB family protein | - |
| HUZ40_RS25015 (HUZ40_24845) | 38667..39863 | - | 1197 | WP_001285362.1 | AAA family ATPase | - |
| HUZ40_RS25020 (HUZ40_24850) | 40032..40841 | - | 810 | WP_032247076.1 | GIY-YIG nuclease family protein | - |
| HUZ40_RS25025 (HUZ40_24855) | 41134..42018 | - | 885 | WP_001113742.1 | RepB family plasmid replication initiator protein | - |
| HUZ40_RS25030 (HUZ40_24860) | 42354..42746 | - | 393 | WP_112918729.1 | hypothetical protein | - |
| HUZ40_RS25035 (HUZ40_24865) | 42758..42898 | - | 141 | WP_000336812.1 | hypothetical protein | - |
| HUZ40_RS25040 (HUZ40_24870) | 42924..43214 | - | 291 | WP_001642860.1 | hypothetical protein | - |
| HUZ40_RS25045 (HUZ40_24875) | 43386..43856 | - | 471 | Protein_47 | hypothetical protein | - |
| HUZ40_RS25050 (HUZ40_24880) | 43917..44885 | - | 969 | WP_000654811.1 | IS5 family transposase IS903B | Transposase |
| HUZ40_RS25060 (HUZ40_24890) | 46200..47462 | + | 1263 | WP_094318251.1 | hypothetical protein | - |
| HUZ40_RS25065 (HUZ40_24895) | 47535..48041 | + | 507 | WP_000021754.1 | hypothetical protein | - |
| HUZ40_RS25070 | 48236..49414 | + | 1179 | WP_094318253.1 | hypothetical protein | - |
| HUZ40_RS25075 (HUZ40_24910) | 49542..49772 | + | 231 | WP_223656858.1 | hypothetical protein | - |
| HUZ40_RS25080 (HUZ40_24915) | 50848..51204 | - | 357 | WP_001062545.1 | hypothetical protein | - |
| HUZ40_RS25085 | 51205..51612 | - | 408 | WP_223656859.1 | hypothetical protein | - |
| HUZ40_RS25090 (HUZ40_24930) | 51964..52353 | + | 390 | WP_000506724.1 | S24 family peptidase | - |
| HUZ40_RS25095 (HUZ40_24935) | 52426..52647 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| HUZ40_RS25100 (HUZ40_24940) | 52647..53027 | + | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| HUZ40_RS25105 (HUZ40_24945) | 53032..53211 | + | 180 | WP_000113018.1 | hypothetical protein | - |
| HUZ40_RS25110 (HUZ40_24950) | 53239..54282 | + | 1044 | WP_112918711.1 | DUF968 domain-containing protein | - |
| HUZ40_RS25115 (HUZ40_24955) | 54371..54823 | + | 453 | WP_001326849.1 | late promoter-activating protein | - |
| HUZ40_RS25120 (HUZ40_24960) | 54909..56102 | + | 1194 | WP_032214401.1 | hypothetical protein | - |
| HUZ40_RS25125 (HUZ40_24965) | 56144..57586 | + | 1443 | WP_223656860.1 | terminase | - |
| HUZ40_RS25130 (HUZ40_24970) | 57611..58462 | - | 852 | WP_000611656.1 | phage repressor protein C1 | - |
| HUZ40_RS25135 (HUZ40_24975) | 58573..58782 | - | 210 | WP_112918712.1 | c1 repressor inactivator | - |
| HUZ40_RS25140 (HUZ40_24980) | 59379..59600 | + | 222 | WP_032214402.1 | hypothetical protein | - |
| HUZ40_RS25145 (HUZ40_24985) | 59608..60639 | + | 1032 | WP_000067532.1 | site-specific integrase | - |
| HUZ40_RS25150 (HUZ40_24990) | 60690..61001 | + | 312 | WP_032214403.1 | hypothetical protein | - |
| HUZ40_RS25155 (HUZ40_24995) | 61249..61545 | + | 297 | Protein_69 | recombinase | - |
| HUZ40_RS25165 (HUZ40_25005) | 62669..62992 | - | 324 | WP_001175593.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| HUZ40_RS25170 (HUZ40_25010) | 63098..64231 | + | 1134 | WP_001089729.1 | permease | - |
| HUZ40_RS25175 (HUZ40_25015) | 64359..64763 | - | 405 | Protein_73 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HUZ40_RS25180 (HUZ40_25020) | 64931..65614 | + | 684 | Protein_74 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| HUZ40_RS25185 (HUZ40_25025) | 65648..67399 | - | 1752 | Protein_75 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| HUZ40_RS25190 (HUZ40_25030) | 67403..67795 | + | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
| HUZ40_RS25195 (HUZ40_25035) | 67933..68817 | + | 885 | WP_000058717.1 | EamA family transporter | - |
| HUZ40_RS25200 (HUZ40_25040) | 68849..70048 | - | 1200 | WP_001493765.1 | Tetracycline resistance protein, class C | ARG |
| HUZ40_RS25205 (HUZ40_25045) | 70154..70804 | + | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| HUZ40_RS25210 (HUZ40_25050) | 70836..71078 | - | 243 | WP_000844627.1 | transposase | - |
| HUZ40_RS25215 (HUZ40_25055) | 71136..71852 | - | 717 | Protein_81 | Tn3 family transposase | - |
| HUZ40_RS25220 (HUZ40_25060) | 71919..74756 | - | 2838 | Protein_82 | Tn3 family transposase TnpA_Tn3 | Transposase |
| HUZ40_RS25225 (HUZ40_25065) | 74813..75517 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HUZ40_RS25230 (HUZ40_25070) | 75713..76573 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| HUZ40_RS25235 (HUZ40_25075) | 76804..77640 | - | 837 | WP_000480972.1 | hypothetical protein | ARG |
| HUZ40_RS25240 (HUZ40_25080) | 77640..78443 | - | 804 | WP_001082320.1 | Aminoglycoside 3'-phosphotransferase | ARG |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|