MGE detailed information
MGE type: Conjugative plasmid MGE length: 99313 bp
Accession: NZ_CP055196 Location: 1..99313 Organism: Shigella flexneri strain STEFF_10 Replicon: plasmid unnamed2
Accession: NZ_CP055196 Location: 1..99313 Organism: Shigella flexneri strain STEFF_10 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ40_RS24250 (46) | 46..1077 | + | 1032 | WP_000907873.1 | plasmid replication initiator RepA | - |
| HUZ40_RS24255 (2100) | 2100..3308 | - | 1209 | WP_239637886.1 | IS91 family transposase ISSbo1 | Transposase |
| HUZ40_RS24260 (3289) | 3289..3561 | - | 273 | WP_000019163.1 | hypothetical protein | - |
| HUZ40_RS24265 (3776) | 3776..4591 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| HUZ40_RS24270 (4678) | 4678..4920 | + | 243 | Protein_4 | phosphoglucosamine mutase | - |
| HUZ40_RS24275 (5156) | 5156..6301 | - | 1146 | Protein_5 | IS91 family transposase ISVsa3 | Transposase |
| HUZ40_RS24280 (6659) | 6659..6928 | + | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| HUZ40_RS24285 (6928) | 6928..7206 | + | 279 | WP_244442846.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| HUZ40_RS24290 (7246) | 7246..8094 | + | 849 | WP_021265674.1 | 3'-5' exonuclease | - |
| HUZ40_RS24295 (8211) | 8211..8684 | + | 474 | WP_001334658.1 | hypothetical protein | - |
| HUZ40_RS24300 (9161) | 9161..9427 | - | 267 | WP_000955263.1 | hypothetical protein | - |
| HUZ40_RS24305 (9427) | 9427..9921 | - | 495 | WP_239637887.1 | hypothetical protein | - |
| HUZ40_RS24310 (9977) | 9977..10579 | - | 603 | WP_000517695.1 | ProQ/FINO family protein | - |
| HUZ40_RS24315 (10933) | 10933..12279 | + | 1347 | WP_001132032.1 | protein YagA | - |
| HUZ40_RS24320 (12558) | 12558..14438 | + | 1881 | WP_001283341.1 | colicin Ia central receptor-binding domain-containing protein | - |
| HUZ40_RS24325 (14456) | 14456..14803 | - | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| HUZ40_RS24330 (14922) | 14922..15270 | + | 349 | Protein_16 | DUF6404 family protein | - |
| HUZ40_RS24335 (15290) | 15290..15880 | - | 591 | WP_000194553.1 | hypothetical protein | - |
| HUZ40_RS24340 (15880) | 15880..16137 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| HUZ40_RS24345 (16488) | 16488..17489 | + | 1002 | WP_000774874.1 | DUF4238 domain-containing protein | - |
| HUZ40_RS24350 (17665) | 17665..18009 | - | 345 | WP_000793307.1 | hypothetical protein | - |
| HUZ40_RS24355 (18508) | 18508..18762 | - | 255 | WP_000678527.1 | hypothetical protein | - |
| HUZ40_RS24360 (18807) | 18807..19733 | - | 927 | WP_001290416.1 | hypothetical protein | - |
| HUZ40_RS24365 (20265) | 20265..20678 | + | 414 | WP_000465043.1 | hypothetical protein | - |
| HUZ40_RS24370 (20680) | 20680..21459 | + | 780 | WP_021265673.1 | site-specific integrase | - |
| HUZ40_RS24375 (21639) | 21639..22283 | + | 645 | WP_001144036.1 | ParA family protein | - |
| HUZ40_RS24380 (22370) | 22370..22678 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| HUZ40_RS24385 (23092) | 23092..24072 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| HUZ40_RS24390 (24065) | 24065..24481 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| HUZ40_RS24395 (24483) | 24483..25757 | - | 1275 | WP_000457492.1 | Y-family DNA polymerase | - |
| HUZ40_RS24400 (25757) | 25757..26194 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HUZ40_RS24405 (26191) | 26191..26439 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| HUZ40_RS24410 (26503) | 26503..27723 | - | 1221 | WP_000343760.1 | ISL3 family transposase ISKox3 | Transposase |
| HUZ40_RS24415 (28181) | 28181..29083 | + | 903 | WP_000273918.1 | DUF1281 domain-containing protein | - |
| HUZ40_RS24420 (29080) | 29080..29391 | + | 312 | WP_010891263.1 | hypothetical protein | - |
| HUZ40_RS24425 (29468) | 29468..30151 | + | 684 | WP_000086178.1 | DNA methylase | - |
| HUZ40_RS24430 (30152) | 30152..30373 | + | 222 | WP_001104887.1 | hypothetical protein | - |
| HUZ40_RS24435 (30333) | 30333..30819 | + | 487 | Protein_37 | DUF1380 family protein | - |
| HUZ40_RS24440 (30870) | 30870..31640 | + | 771 | WP_001044393.1 | hypothetical protein | - |
| HUZ40_RS24445 (32058) | 32058..32483 | + | 426 | WP_001198886.1 | antirestriction protein | - |
| HUZ40_RS24450 (32530) | 32530..32952 | + | 423 | WP_000271729.1 | DUF1380 family protein | - |
| HUZ40_RS24455 (32949) | 32949..33140 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| HUZ40_RS24460 (33473) | 33473..33541 | - | 69 | Protein_42 | pilus protein | - |
| HUZ40_RS24465 (33910) | 33910..34437 | + | 528 | WP_001276110.1 | single-stranded DNA-binding protein | - |
| HUZ40_RS24470 (34495) | 34495..34728 | + | 234 | WP_000006014.1 | DUF905 domain-containing protein | - |
| HUZ40_RS24475 (34787) | 34787..36745 | + | 1959 | WP_021265661.1 | ParB/RepB/Spo0J family partition protein | - |
| HUZ40_RS24480 (36800) | 36800..37234 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| HUZ40_RS24485 (37231) | 37231..37950 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| HUZ40_RS24490 (37947) | 37947..38543 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| HUZ40_RS24495 (39006) | 39006..39506 | + | 501 | WP_000117609.1 | antirestriction protein ArdA | - |
| HUZ40_RS24500 (40235) | 40235..40669 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| HUZ40_RS24505 (40761) | 40761..41027 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| HUZ40_RS24510 (41092) | 41092..42033 | + | 942 | WP_000038339.1 | Recombination-promoting nuclease RpnA | VF |
| HUZ40_RS24515 (42095) | 42095..42265 | + | 171 | WP_000150325.1 | hypothetical protein | - |
| HUZ40_RS24520 (42296) | 42296..42547 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| HUZ40_RS24525 (43127) | 43127..43975 | + | 849 | WP_001077047.1 | DUF4942 domain-containing protein | - |
| HUZ40_RS24530 (44060) | 44060..44395 | - | 336 | WP_000157098.1 | hypothetical protein | - |
| HUZ40_RS24535 (44629) | 44629..44961 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| HUZ40_RS24540 (44972) | 44972..47671 | + | 2700 | WP_024143648.1 | Protein TraI | Relaxase |
| HUZ40_RS24545 (47708) | 47708..49999 | - | 2292 | WP_001289276.1 | F-type conjugative transfer protein TrbC | - |
| HUZ40_RS24550 (49992) | 49992..51062 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| HUZ40_RS24555 (51081) | 51081..52289 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (52469) | 52469..52526 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (52469) | 52469..52526 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (52469) | 52469..52526 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (52469) | 52469..52526 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| HUZ40_RS24560 (52581) | 52581..52733 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| HUZ40_RS24565 (52805) | 52805..53056 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| HUZ40_RS25360 (53555) | 53555..53650 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| HUZ40_RS24575 (53715) | 53715..53891 | - | 177 | WP_001054904.1 | hypothetical protein | - |
| HUZ40_RS24580 (54283) | 54283..54492 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| HUZ40_RS24585 (54564) | 54564..55214 | - | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HUZ40_RS24590 (55288) | 55288..57456 | - | 2169 | WP_021265679.1 | DotA/TraY family protein | - |
| HUZ40_RS24595 (57553) | 57553..58137 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| HUZ40_RS24600 (58166) | 58166..59368 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| HUZ40_RS24605 (59335) | 59335..59949 | - | 615 | WP_000337398.1 | IncI1-type conjugal transfer protein TraV | - |
| HUZ40_RS24610 (59949) | 59949..62993 | - | 3045 | WP_021265678.1 | IncI1-type conjugal transfer protein TraU | - |
| HUZ40_RS24615 (63083) | 63083..63883 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| HUZ40_RS24620 (63867) | 63867..64055 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| HUZ40_RS24625 (64119) | 64119..64523 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| HUZ40_RS24630 (64574) | 64574..65101 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| HUZ40_RS24635 (65101) | 65101..65805 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| HUZ40_RS24640 (65805) | 65805..67094 | - | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| HUZ40_RS24645 (67097) | 67097..68080 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| HUZ40_RS24650 (68091) | 68091..68783 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| HUZ40_RS24655 (68780) | 68780..69127 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| HUZ40_RS24660 (69145) | 69145..72912 | - | 3768 | WP_012783940.1 | DUF5710 domain-containing protein | - |
| HUZ40_RS24665 (73002) | 73002..73553 | - | 552 | WP_012783942.1 | Phospholipase D | VF |
| HUZ40_RS24670 (73568) | 73568..73858 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| HUZ40_RS24675 (73855) | 73855..75003 | - | 1149 | WP_001024971.1 | putative protein YggR | VF |
| HUZ40_RS24680 (75000) | 75000..75818 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| HUZ40_RS24685 (75815) | 75815..76273 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| HUZ40_RS24690 (76667) | 76667..77251 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| HUZ40_RS24695 (77311) | 77311..78513 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| HUZ40_RS24700 (78598) | 78598..79422 | - | 825 | WP_001238939.1 | conjugal transfer protein TraE | - |
| HUZ40_RS24705 (79573) | 79573..80727 | - | 1155 | WP_001139957.1 | site-specific integrase | - |
| HUZ40_RS24710 (81418) | 81418..81666 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| HUZ40_RS24715 (81663) | 81663..82955 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| HUZ40_RS24720 (82955) | 82955..83611 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| HUZ40_RS24725 (83596) | 83596..84156 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| HUZ40_RS24730 (84166) | 84166..84780 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| HUZ40_RS24735 (84798) | 84798..85895 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HUZ40_RS24740 (85908) | 85908..87461 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HUZ40_RS24745 (87472) | 87472..87924 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| HUZ40_RS24750 (87911) | 87911..89206 | - | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| HUZ40_RS24755 (89199) | 89199..90881 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| HUZ40_RS24760 (90895) | 90895..91332 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| HUZ40_RS24765 (91332) | 91332..92399 | - | 1068 | WP_000742600.1 | hypothetical protein | VF |
| HUZ40_RS24770 (93147) | 93147..94375 | + | 1229 | WP_089541817.1 | IS3 family transposase IS2 | Transposase |
| HUZ40_RS24775 (94409) | 94409..94861 | - | 453 | WP_001535696.1 | hypothetical protein | - |
| HUZ40_RS24780 (94904) | 94904..95158 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| HUZ40_RS24785 (95426) | 95426..95992 | - | 567 | WP_000776428.1 | protein TraD | - |
| HUZ40_RS24790 (96006) | 96006..96689 | - | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| HUZ40_RS24795 (96943) | 96943..97476 | - | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| HUZ40_RS24800 (97918) | 97918..98205 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| HUZ40_RS24805 (98123) | 98123..98353 | - | 231 | WP_228772074.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|