MGE detailed information
MGE type: Conjugative plasmid MGE length: 125749 bp
Accession: NZ_CP055195 Location: 1..125749 Organism: Shigella flexneri strain STEFF_10 Replicon: plasmid unnamed1
Accession: NZ_CP055195 Location: 1..125749 Organism: Shigella flexneri strain STEFF_10 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ40_RS23515 (1) | 1..978 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| HUZ40_RS23520 (1263) | 1263..2003 | - | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| HUZ40_RS23525 (2124) | 2124..2312 | - | 189 | WP_001312821.1 | hypothetical protein | - |
| HUZ40_RS23530 (2686) | 2686..3588 | - | 903 | WP_001312822.1 | hypothetical protein | VF |
| HUZ40_RS23535 (3657) | 3657..4766 | - | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| HUZ40_RS23540 (5199) | 5199..6152 | - | 954 | WP_000280980.1 | Protease 7 | VF |
| HUZ40_RS23545 (7449) | 7449..7628 | - | 180 | Protein_6 | integrase core domain-containing protein | - |
| HUZ40_RS23550 (7767) | 7767..8980 | + | 1214 | WP_162842477.1 | IS3 family transposase IS629 | Transposase |
| HUZ40_RS23555 (9128) | 9128..9396 | - | 269 | Protein_8 | IS3 family transposase ISLad1 | Transposase |
| HUZ40_RS23560 (9453) | 9453..10150 | + | 698 | WP_224158172.1 | IS1-like element IS1A family transposase | - |
| HUZ40_RS23565 (10228) | 10228..11617 | - | 1390 | Protein_10 | ISNCY family transposase ISKpn21 | Transposase |
| HUZ40_RS23570 (11927) | 11927..12076 | - | 150 | Protein_11 | IS3 family transposase IS2 | Transposase |
| HUZ40_RS23575 (12254) | 12254..13447 | - | 1194 | WP_000450494.1 | GTP-binding protein | - |
| HUZ40_RS23585 (15103) | 15103..15308 | + | 206 | Protein_14 | thiosulfate oxidation carrier complex protein SoxZ | - |
| HUZ40_RS23590 (15447) | 15447..16683 | - | 1237 | Protein_15 | IS3 family transposase IS2 | Transposase |
| HUZ40_RS23595 (17310) | 17310..17603 | + | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| HUZ40_RS23605 (17687) | 17687..17835 | - | 149 | Protein_17 | Rz1 family lipoprotein | - |
| HUZ40_RS23610 (17792) | 17792..17899 | - | 108 | Protein_18 | lysis system i-spanin subunit Rz | - |
| HUZ40_RS23615 (18414) | 18414..19441 | + | 1028 | Protein_19 | integrase core domain-containing protein | - |
| HUZ40_RS23620 (20752) | 20752..21867 | + | 1116 | WP_021538346.1 | Elloramycin glycosyltransferase ElmGT | VF |
| HUZ40_RS23625 (22007) | 22007..25666 | + | 3660 | WP_001111199.1 | Multidrug efflux ATP-binding/permease protein | VF |
| HUZ40_RS23630 (25770) | 25770..26999 | + | 1230 | WP_000933675.1 | Enterochelin esterase | VF |
| HUZ40_RS23635 (27084) | 27084..28040 | + | 957 | WP_000271276.1 | Ferri-bacillibactin esterase BesA | VF |
| HUZ40_RS23640 (28085) | 28085..30262 | - | 2178 | WP_001222186.1 | Ferric enterobactin receptor | VF |
| HUZ40_RS23645 (30497) | 30497..31194 | + | 698 | WP_223369285.1 | IS1-like element IS1A family transposase | - |
| HUZ40_RS23650 (31211) | 31211..31408 | - | 198 | Protein_26 | colicin V | - |
| HUZ40_RS23655 (31386) | 31386..31622 | - | 237 | WP_014640552.1 | colicin V immunity protein | - |
| HUZ40_RS23660 (32101) | 32101..32382 | - | 282 | WP_001105066.1 | hypothetical protein | - |
| HUZ40_RS23665 (32555) | 32555..32722 | + | 168 | Protein_29 | colicin-B | - |
| HUZ40_RS23670 (32740) | 32740..33267 | - | 528 | WP_000203272.1 | colicin B immunity protein | - |
| HUZ40_RS23675 (33511) | 33511..34326 | + | 816 | WP_001312845.1 | lipid II-degrading bacteriocin colicin M | - |
| HUZ40_RS23680 (34376) | 34376..34729 | - | 354 | WP_000864812.1 | colicin M immunity protein | - |
| HUZ40_RS23685 (34907) | 34907..35698 | - | 792 | WP_000016493.1 | site-specific integrase | - |
| HUZ40_RS23690 (35695) | 35695..36384 | - | 690 | WP_000796228.1 | hypothetical protein | - |
| HUZ40_RS23695 (36428) | 36428..36778 | - | 351 | WP_000493379.1 | hypothetical protein | - |
| HUZ40_RS23700 (37323) | 37323..38411 | + | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| HUZ40_RS23705 (38413) | 38413..40638 | + | 2226 | WP_000698737.1 | P-loop NTPase fold protein | - |
| HUZ40_RS23710 (40688) | 40688..41587 | - | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| HUZ40_RS23715 (41577) | 41577..41867 | - | 291 | WP_000111771.1 | hypothetical protein | - |
| HUZ40_RS23720 (42163) | 42163..42393 | + | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| HUZ40_RS23725 (42390) | 42390..42806 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HUZ40_RS23730 (42968) | 42968..45106 | - | 2139 | WP_000350638.1 | AAA family ATPase | - |
| HUZ40_RS23735 (45460) | 45460..45717 | + | 258 | WP_000343085.1 | hypothetical protein | - |
| HUZ40_RS23740 (45717) | 45717..46307 | + | 591 | WP_000194575.1 | hypothetical protein | - |
| HUZ40_RS23745 (46570) | 46570..48030 | + | 1461 | WP_233324265.1 | AAA family ATPase | - |
| HUZ40_RS23750 (48318) | 48318..48935 | + | 618 | WP_000521603.1 | ProQ/FINO family protein | - |
| HUZ40_RS23755 (49228) | 49228..50307 | - | 1080 | WP_001089727.1 | permease | - |
| HUZ40_RS23760 (50412) | 50412..50735 | + | 324 | WP_001175594.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| HUZ40_RS23765 (50896) | 50896..51216 | + | 321 | Protein_49 | NAD(P)H-dependent oxidoreductase | - |
| HUZ40_RS23770 (51269) | 51269..51973 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HUZ40_RS23775 (52039) | 52039..52323 | + | 285 | Protein_51 | IS6 family transposase IS26 | Transposase |
| HUZ40_RS23780 (52513) | 52513..53328 | - | 816 | WP_000018329.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| HUZ40_RS23785 (53479) | 53479..54183 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HUZ40_RS23790 (54327) | 54327..54968 | - | 642 | WP_001011939.1 | Chloramphenicol acetyltransferase 2 | ARG |
| HUZ40_RS23795 (55118) | 55118..55618 | - | 501 | WP_001239317.1 | hypothetical protein | - |
| HUZ40_RS23800 (55698) | 55698..56402 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HUZ40_RS23805 (56456) | 56456..56884 | + | 429 | Protein_57 | Tn3 family transposase TnpA_Tn3 | Transposase |
| HUZ40_RS23810 (56920) | 56920..57335 | - | 416 | Protein_58 | IS1-like element IS1B family transposase | - |
| HUZ40_RS23815 (57584) | 57584..57985 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| HUZ40_RS23820 (57918) | 57918..58175 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| HUZ40_RS23825 (58268) | 58268..58921 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| HUZ40_RS23830 (59019) | 59019..59159 | - | 141 | WP_001333237.1 | hypothetical protein | - |
| HUZ40_RS23835 (59860) | 59860..60717 | - | 858 | WP_000774297.1 | incFII family plasmid replication initiator RepA | - |
| HUZ40_RS23840 (60710) | 60710..61192 | - | 483 | WP_001273588.1 | hypothetical protein | - |
| HUZ40_RS23845 (61185) | 61185..61232 | - | 48 | WP_229471593.1 | hypothetical protein | - |
| HUZ40_RS23850 (61223) | 61223..61474 | + | 252 | WP_223195197.1 | replication protein RepA | - |
| HUZ40_RS23855 (61491) | 61491..61748 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| HUZ40_RS23860 (62032) | 62032..62181 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| - (62225) | 62225..62286 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (62225) | 62225..62286 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (62225) | 62225..62286 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (62225) | 62225..62286 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| HUZ40_RS23865 (62542) | 62542..62616 | - | 75 | Protein_69 | endonuclease | - |
| HUZ40_RS23870 (62862) | 62862..63074 | - | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| HUZ40_RS23875 (63210) | 63210..63770 | - | 561 | WP_000139315.1 | fertility inhibition protein FinO | - |
| HUZ40_RS23880 (63873) | 63873..64733 | - | 861 | WP_000704513.1 | putative protein YcjY | VF |
| HUZ40_RS23885 (64792) | 64792..65538 | - | 747 | WP_000205749.1 | conjugal transfer pilus acetylase TraX | - |
| HUZ40_RS23890 (65558) | 65558..70828 | - | 5271 | WP_000986962.1 | Multifunctional conjugation protein TraI | Relaxase |
| HUZ40_RS23895 (70910) | 70910..71137 | + | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| HUZ40_RS23900 (71137) | 71137..71535 | + | 399 | WP_000911313.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HUZ40_RS23905 (71544) | 71544..73697 | - | 2154 | WP_000009324.1 | type IV conjugative transfer system coupling protein TraD | - |
| HUZ40_RS23910 (73950) | 73950..74681 | - | 732 | WP_023565183.1 | conjugal transfer complement resistance protein TraT | - |
| HUZ40_RS23915 (74713) | 74713..75210 | - | 498 | WP_000605857.1 | entry exclusion protein | - |
| HUZ40_RS23920 (75226) | 75226..78048 | - | 2823 | WP_001007018.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| HUZ40_RS23925 (78045) | 78045..79418 | - | 1374 | WP_001517790.1 | conjugal transfer pilus assembly protein TraH | - |
| HUZ40_RS23930 (79418) | 79418..79798 | - | 381 | WP_001389370.1 | F-type conjugal transfer protein TrbF | - |
| HUZ40_RS23935 (79785) | 79785..80126 | - | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| HUZ40_RS23940 (80056) | 80056..80601 | - | 546 | WP_000059851.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HUZ40_RS23945 (80588) | 80588..80872 | - | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HUZ40_RS23950 (80953) | 80953..81267 | + | 315 | WP_001324103.1 | hypothetical protein | - |
| HUZ40_RS23955 (81269) | 81269..81616 | - | 348 | WP_001287910.1 | conjugal transfer protein TrbA | - |
| HUZ40_RS23960 (81632) | 81632..82375 | - | 744 | WP_001030393.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HUZ40_RS23965 (82368) | 82368..82625 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| HUZ40_RS23970 (82652) | 82652..84460 | - | 1809 | WP_000821841.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HUZ40_RS23975 (84457) | 84457..85095 | - | 639 | WP_000777700.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HUZ40_RS23980 (85104) | 85104..86096 | - | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| HUZ40_RS23985 (86093) | 86093..86725 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| HUZ40_RS23990 (86722) | 86722..87108 | - | 387 | WP_000099686.1 | type-F conjugative transfer system protein TrbI | - |
| HUZ40_RS23995 (87105) | 87105..89732 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| HUZ40_RS24000 (89892) | 89892..90113 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| HUZ40_RS24005 (90248) | 90248..90763 | - | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HUZ40_RS24010 (90760) | 90760..91011 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| HUZ40_RS24015 (91023) | 91023..91220 | - | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| HUZ40_RS24020 (91207) | 91207..91797 | - | 591 | WP_001376242.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| HUZ40_RS24025 (91787) | 91787..93214 | - | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| HUZ40_RS24030 (93214) | 93214..93942 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| HUZ40_RS24035 (93929) | 93929..94495 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| HUZ40_RS24040 (94517) | 94517..94828 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| HUZ40_RS24045 (94843) | 94843..95208 | - | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| HUZ40_RS24050 (95241) | 95241..95642 | - | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| HUZ40_RS24055 (95735) | 95735..96424 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| HUZ40_RS24060 (96611) | 96611..96994 | - | 384 | WP_001151524.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| HUZ40_RS24065 (97315) | 97315..97917 | + | 603 | WP_000243712.1 | hypothetical protein | VF |
| HUZ40_RS24070 (98214) | 98214..99035 | - | 822 | WP_001234426.1 | DUF932 domain-containing protein | - |
| HUZ40_RS24075 (99153) | 99153..99440 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| HUZ40_RS24080 (99465) | 99465..99671 | - | 207 | WP_000547968.1 | hypothetical protein | - |
| HUZ40_RS24085 (99741) | 99741..99913 | + | 173 | Protein_113 | hypothetical protein | - |
| HUZ40_RS24090 (99911) | 99911..100141 | - | 231 | WP_071586998.1 | hypothetical protein | - |
| HUZ40_RS24095 (100361) | 100361..100486 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| HUZ40_RS24100 (100428) | 100428..100577 | - | 150 | Protein_116 | plasmid maintenance protein Mok | - |
| - (100563) | 100563..100787 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (100563) | 100563..100787 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (100563) | 100563..100787 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (100563) | 100563..100787 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| HUZ40_RS24105 (100599) | 100599..100787 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| HUZ40_RS24110 (100756) | 100756..101518 | - | 763 | Protein_118 | plasmid SOS inhibition protein A | - |
| HUZ40_RS24115 (101515) | 101515..101949 | - | 435 | WP_000845936.1 | conjugation system SOS inhibitor PsiB | - |
| HUZ40_RS24120 (102004) | 102004..102201 | - | 198 | Protein_120 | hypothetical protein | - |
| HUZ40_RS24125 (102229) | 102229..102462 | - | 234 | WP_000005987.1 | DUF905 family protein | - |
| HUZ40_RS24130 (102530) | 102530..103069 | - | 540 | WP_000290840.1 | single-stranded DNA-binding protein | - |
| HUZ40_RS24135 (103095) | 103095..103301 | - | 207 | WP_000275856.1 | hypothetical protein | - |
| HUZ40_RS24140 (103371) | 103371..103451 | + | 81 | Protein_124 | hypothetical protein | - |
| HUZ40_RS24145 (103634) | 103634..103803 | - | 170 | Protein_125 | hypothetical protein | - |
| HUZ40_RS24150 (104397) | 104397..105368 | - | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| HUZ40_RS24155 (105368) | 105368..106534 | - | 1167 | WP_001238646.1 | Sporulation initiation inhibitor protein Soj | VF |
| HUZ40_RS24165 (108016) | 108016..110211 | - | 2196 | WP_175267602.1 | Ferric aerobactin receptor | VF |
| HUZ40_RS24170 (110243) | 110243..111576 | - | 1334 | Protein_130 | L-lysine N6-monooxygenase | VF |
| HUZ40_RS24175 (111573) | 111573..113315 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| HUZ40_RS24180 (113315) | 113315..114262 | - | 948 | WP_000011910.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| HUZ40_RS24185 (114263) | 114263..115987 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| HUZ40_RS24190 (116123) | 116123..117316 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| HUZ40_RS24195 (117696) | 117696..118076 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| HUZ40_RS24200 (118417) | 118417..118830 | - | 414 | Protein_136 | phosphopyruvate hydratase | - |
| HUZ40_RS24205 (118828) | 118828..119085 | + | 258 | Protein_137 | Tn3 family transposase | - |
| HUZ40_RS24210 (119319) | 119319..120176 | - | 858 | WP_000968140.1 | Manganese transport system membrane protein MntB | ARG |
| HUZ40_RS24215 (120173) | 120173..121030 | - | 858 | WP_000992806.1 | Manganese transport system membrane protein MntB | ARG |
| HUZ40_RS24220 (121027) | 121027..121854 | - | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| HUZ40_RS24225 (121854) | 121854..122768 | - | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| HUZ40_RS24230 (123124) | 123124..123821 | + | 698 | WP_224158172.1 | IS1-like element IS1A family transposase | - |
| HUZ40_RS24235 (124001) | 124001..124514 | - | 514 | Protein_143 | DUF4113 domain-containing protein | - |
| HUZ40_RS24240 (124575) | 124575..124679 | - | 105 | Protein_144 | AAA family ATPase | - |
| HUZ40_RS24245 (124681) | 124681..125004 | - | 324 | Protein_145 | IS21 family transposase IS21 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|