MGE detailed information
MGE type: Conjugative plasmid MGE length: 84883 bp
Accession: NZ_CP055111 Location: 1..84883 Organism: Shigella flexneri strain SWHIN_104 Replicon: plasmid unnamed2
Accession: NZ_CP055111 Location: 1..84883 Organism: Shigella flexneri strain SWHIN_104 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ82_RS24150 (46) | 46..1077 | + | 1032 | WP_000907869.1 | plasmid replication initiator RepA | - |
| HUZ82_RS24155 (1981) | 1981..2265 | + | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| HUZ82_RS24160 (2265) | 2265..2540 | + | 276 | WP_000421259.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HUZ82_RS24165 (2646) | 2646..2926 | + | 281 | Protein_3 | hypothetical protein | - |
| HUZ82_RS24170 (3118) | 3118..3384 | - | 267 | WP_021513970.1 | hypothetical protein | - |
| HUZ82_RS24175 (3384) | 3384..3878 | - | 495 | WP_015058884.1 | hypothetical protein | - |
| HUZ82_RS24180 (3934) | 3934..4536 | - | 603 | WP_000521606.1 | ProQ/FINO family protein | - |
| HUZ82_RS24185 (4712) | 4712..5764 | - | 1053 | WP_000655519.1 | hypothetical protein | - |
| HUZ82_RS24190 (5977) | 5977..6567 | - | 591 | WP_001401589.1 | hypothetical protein | - |
| HUZ82_RS24195 (6567) | 6567..6821 | - | 255 | WP_000343106.1 | hypothetical protein | - |
| HUZ82_RS24200 (7389) | 7389..7802 | + | 414 | WP_000465036.1 | hypothetical protein | - |
| HUZ82_RS24205 (7804) | 7804..8583 | + | 780 | WP_023156097.1 | site-specific integrase | - |
| HUZ82_RS24210 (8763) | 8763..9407 | + | 645 | WP_001144036.1 | ParA family protein | - |
| HUZ82_RS24215 (9494) | 9494..9802 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| HUZ82_RS24220 (10216) | 10216..11196 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| HUZ82_RS24225 (11189) | 11189..11605 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| HUZ82_RS24230 (11607) | 11607..12881 | - | 1275 | WP_000457524.1 | Y-family DNA polymerase | - |
| HUZ82_RS24235 (12881) | 12881..13318 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HUZ82_RS24240 (13315) | 13315..13563 | - | 249 | WP_000618111.1 | DinI-like family protein | - |
| HUZ82_RS24245 (13981) | 13981..14883 | + | 903 | WP_001302618.1 | DUF1281 domain-containing protein | - |
| HUZ82_RS24250 (14880) | 14880..15191 | + | 312 | WP_239604466.1 | hypothetical protein | - |
| HUZ82_RS24255 (15268) | 15268..15951 | + | 684 | WP_000086185.1 | DNA methylase | - |
| HUZ82_RS24260 (15952) | 15952..16173 | + | 222 | WP_021560304.1 | hypothetical protein | - |
| HUZ82_RS24265 (16067) | 16067..16620 | + | 554 | Protein_23 | DUF1380 family protein | - |
| HUZ82_RS24270 (16666) | 16666..17442 | + | 777 | WP_061671617.1 | hypothetical protein | - |
| HUZ82_RS24275 (17854) | 17854..18279 | + | 426 | WP_001198930.1 | antirestriction protein | - |
| HUZ82_RS24280 (18326) | 18326..18748 | + | 423 | WP_061671614.1 | DUF1380 family protein | - |
| HUZ82_RS24285 (18745) | 18745..18936 | + | 192 | WP_112046903.1 | hypothetical protein | - |
| HUZ82_RS24290 (19007) | 19007..19321 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| HUZ82_RS24295 (19704) | 19704..20231 | + | 528 | WP_053264372.1 | single-stranded DNA-binding protein | - |
| HUZ82_RS24300 (20288) | 20288..20521 | + | 234 | WP_024261882.1 | DUF905 domain-containing protein | - |
| HUZ82_RS24305 (20583) | 20583..22541 | + | 1959 | WP_112046901.1 | ParB/RepB/Spo0J family partition protein | - |
| HUZ82_RS24310 (22596) | 22596..23030 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| HUZ82_RS24315 (23027) | 23027..23746 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| HUZ82_RS24320 (23743) | 23743..24339 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| HUZ82_RS24325 (24802) | 24802..25302 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| HUZ82_RS24330 (26030) | 26030..26464 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| HUZ82_RS24335 (26557) | 26557..26823 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| HUZ82_RS24340 (26888) | 26888..27790 | + | 903 | WP_239604462.1 | hypothetical protein | VF |
| HUZ82_RS24345 (27790) | 27790..28023 | + | 234 | WP_162861757.1 | hypothetical protein | - |
| HUZ82_RS24350 (28054) | 28054..28305 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| HUZ82_RS24355 (28885) | 28885..29733 | + | 849 | WP_239604464.1 | DUF4942 domain-containing protein | - |
| HUZ82_RS24360 (29818) | 29818..30153 | - | 336 | WP_001759655.1 | hypothetical protein | - |
| HUZ82_RS24365 (30387) | 30387..30719 | + | 333 | WP_024175674.1 | IncI1-type relaxosome accessory protein NikA | - |
| HUZ82_RS24370 (30730) | 30730..33429 | + | 2700 | WP_021513956.1 | hypothetical protein | Relaxase |
| HUZ82_RS24375 (33466) | 33466..35757 | - | 2292 | WP_001289269.1 | F-type conjugative transfer protein TrbC | - |
| HUZ82_RS24380 (35750) | 35750..36820 | - | 1071 | WP_000151579.1 | IncI1-type conjugal transfer protein TrbB | - |
| HUZ82_RS24385 (36839) | 36839..38047 | - | 1209 | WP_001383960.1 | IncI1-type conjugal transfer protein TrbA | - |
| HUZ82_RS24390 (38265) | 38265..39218 | - | 954 | WP_021513958.1 | hypothetical protein | - |
| - (39412) | 39412..39467 | - | 56 | NuclAT_1 | - | - |
| - (39412) | 39412..39467 | - | 56 | NuclAT_1 | - | - |
| - (39412) | 39412..39467 | - | 56 | NuclAT_1 | - | - |
| - (39412) | 39412..39467 | - | 56 | NuclAT_1 | - | - |
| - (39708) | 39708..39765 | - | 58 | NuclAT_0 | - | - |
| - (39708) | 39708..39765 | - | 58 | NuclAT_0 | - | - |
| - (39708) | 39708..39765 | - | 58 | NuclAT_0 | - | - |
| - (39708) | 39708..39765 | - | 58 | NuclAT_0 | - | - |
| HUZ82_RS24395 (39820) | 39820..39972 | + | 153 | WP_023156060.1 | Hok/Gef family protein | Toxin Detail |
| HUZ82_RS24400 (40044) | 40044..40295 | - | 252 | WP_021513960.1 | hypothetical protein | - |
| HUZ82_RS24740 (40793) | 40793..40888 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| HUZ82_RS24410 (40953) | 40953..41129 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| HUZ82_RS24415 (41461) | 41461..41670 | + | 210 | WP_000062602.1 | HEAT repeat domain-containing protein | - |
| HUZ82_RS24420 (41742) | 41742..42404 | - | 663 | WP_000644792.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HUZ82_RS24425 (42469) | 42469..44637 | - | 2169 | WP_000698366.1 | DotA/TraY family protein | - |
| HUZ82_RS24430 (44734) | 44734..45318 | - | 585 | WP_001037996.1 | IncI1-type conjugal transfer protein TraX | - |
| HUZ82_RS24435 (45347) | 45347..46549 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| HUZ82_RS24440 (46516) | 46516..47130 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| HUZ82_RS24445 (47130) | 47130..50174 | - | 3045 | WP_001024776.1 | IncI1-type conjugal transfer protein TraU | - |
| HUZ82_RS24450 (50264) | 50264..51064 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| HUZ82_RS24455 (51048) | 51048..51236 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| HUZ82_RS24460 (51300) | 51300..51704 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| HUZ82_RS24465 (51755) | 51755..52282 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| HUZ82_RS24470 (52282) | 52282..52986 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| HUZ82_RS24475 (52986) | 52986..54275 | - | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| HUZ82_RS24480 (54278) | 54278..55261 | - | 984 | WP_021513963.1 | hypothetical protein | VF |
| HUZ82_RS24485 (55272) | 55272..55964 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| HUZ82_RS24490 (55961) | 55961..56308 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| HUZ82_RS24495 (56326) | 56326..60093 | - | 3768 | WP_021513964.1 | DUF5710 domain-containing protein | - |
| HUZ82_RS24500 (60183) | 60183..60734 | - | 552 | WP_000014584.1 | Cardiolipin synthase A | VF |
| HUZ82_RS24505 (60749) | 60749..61039 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| HUZ82_RS24510 (61036) | 61036..62184 | - | 1149 | WP_001024975.1 | hypothetical protein | VF |
| HUZ82_RS24515 (62181) | 62181..62999 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| HUZ82_RS24520 (62996) | 62996..63454 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| HUZ82_RS24525 (63849) | 63849..64433 | - | 585 | WP_000977520.1 | histidine phosphatase family protein | - |
| HUZ82_RS24530 (64493) | 64493..65695 | - | 1203 | WP_000976357.1 | conjugal transfer protein TraF | - |
| HUZ82_RS24535 (65781) | 65781..66605 | - | 825 | WP_015058912.1 | conjugal transfer protein TraE | - |
| HUZ82_RS24540 (66756) | 66756..67910 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| HUZ82_RS24545 (69430) | 69430..69678 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| HUZ82_RS24550 (69675) | 69675..70967 | - | 1293 | WP_039719938.1 | hypothetical protein | VF |
| HUZ82_RS24555 (70967) | 70967..71623 | - | 657 | WP_001193551.1 | hypothetical protein | VF |
| HUZ82_RS24560 (71608) | 71608..72168 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| HUZ82_RS24565 (72178) | 72178..72792 | - | 615 | WP_000908228.1 | hypothetical protein | VF |
| HUZ82_RS24570 (72809) | 72809..73894 | - | 1086 | WP_001208803.1 | hypothetical protein | VF |
| HUZ82_RS24575 (73907) | 73907..75460 | - | 1554 | WP_000362204.1 | hypothetical protein | VF |
| HUZ82_RS24580 (75471) | 75471..75923 | - | 453 | WP_001247333.1 | hypothetical protein | VF |
| HUZ82_RS24585 (75910) | 75910..77205 | - | 1296 | WP_021513967.1 | type 4b pilus protein PilO2 | - |
| HUZ82_RS24590 (77198) | 77198..78880 | - | 1683 | WP_000748143.1 | hypothetical protein | VF |
| HUZ82_RS24595 (78894) | 78894..79331 | - | 438 | WP_000539811.1 | hypothetical protein | VF |
| HUZ82_RS24600 (79331) | 79331..80398 | - | 1068 | WP_021513968.1 | hypothetical protein | VF |
| HUZ82_RS24605 (81150) | 81150..81404 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| HUZ82_RS24610 (81576) | 81576..82259 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| HUZ82_RS24615 (82513) | 82513..83046 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| HUZ82_RS24620 (83488) | 83488..83775 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| HUZ82_RS24625 (83813) | 83813..83971 | - | 159 | Protein_95 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|