MGE detailed information
MGE type: Mobilizable plasmid MGE length: 58696 bp
Accession: NZ_CP055102 Location: 1..58696 Organism: Shigella flexneri strain SWHIN_107 Replicon: plasmid unnamed3
Accession: NZ_CP055102 Location: 1..58696 Organism: Shigella flexneri strain SWHIN_107 Replicon: plasmid unnamed3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ84_RS24805 (HUZ84_24600) | 1..1029 | + | 1029 | WP_001175213.1 | plasmid replication initiator RepA | - |
| HUZ84_RS24810 | 1730..1920 | + | 191 | Protein_1 | hypothetical protein | - |
| HUZ84_RS24815 | 2570..2722 | + | 153 | Protein_2 | DUF5431 family protein | - |
| HUZ84_RS24820 (HUZ84_24605) | 2667..2789 | + | 123 | WP_223170659.1 | type I toxin-antitoxin system Hok family toxin | - |
| HUZ84_RS24825 (HUZ84_24610) | 2939..3535 | + | 597 | WP_000125165.1 | ProQ/FINO family protein | - |
| HUZ84_RS24830 | 3553..3837 | - | 285 | WP_001162371.1 | hypothetical protein | - |
| HUZ84_RS24835 (HUZ84_24620) | 3911..4576 | - | 666 | WP_000532149.1 | division plane positioning ATPase MipZ | - |
| HUZ84_RS24840 (HUZ84_24625) | 5174..5503 | + | 330 | WP_000855121.1 | hypothetical protein | - |
| HUZ84_RS24845 (HUZ84_24630) | 6082..6405 | + | 324 | WP_000427402.1 | hypothetical protein | - |
| HUZ84_RS24850 (HUZ84_24635) | 6446..6655 | + | 210 | WP_000866036.1 | hypothetical protein | - |
| HUZ84_RS24855 (HUZ84_24640) | 6752..6976 | + | 225 | WP_000814381.1 | hypothetical protein | - |
| HUZ84_RS24860 (HUZ84_24645) | 7028..7288 | + | 261 | WP_000702247.1 | hypothetical protein | Toxin Detail |
| HUZ84_RS24865 (HUZ84_24650) | 7278..7529 | + | 252 | WP_001132407.1 | transcriptional regulator | Antitoxin Detail |
| HUZ84_RS24870 (HUZ84_24655) | 8079..8357 | + | 279 | WP_000545938.1 | hypothetical protein | - |
| HUZ84_RS24875 (HUZ84_24660) | 8822..9070 | + | 249 | WP_000513532.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| HUZ84_RS24880 (HUZ84_24665) | 9067..9414 | + | 348 | WP_000681609.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| HUZ84_RS24885 | 9502..9945 | - | 444 | WP_023223351.1 | hypothetical protein | - |
| HUZ84_RS24890 (HUZ84_24675) | 10186..10485 | + | 300 | WP_034169410.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| HUZ84_RS24895 (HUZ84_24680) | 10745..11071 | - | 327 | WP_000206697.1 | hypothetical protein | - |
| HUZ84_RS24900 (HUZ84_24685) | 11073..11411 | - | 339 | WP_029797038.1 | hypothetical protein | - |
| HUZ84_RS24905 | 11391..11513 | - | 123 | Protein_20 | hypothetical protein | - |
| HUZ84_RS24910 (HUZ84_24690) | 11533..12240 | - | 708 | WP_000108794.1 | hypothetical protein | - |
| HUZ84_RS24915 (HUZ84_24695) | 12242..12994 | - | 753 | WP_000797966.1 | conjugal transfer protein TraL | - |
| HUZ84_RS24920 (HUZ84_24700) | 13012..13413 | - | 402 | WP_021575837.1 | hypothetical protein | - |
| HUZ84_RS24925 (HUZ84_24705) | 13782..14123 | + | 342 | WP_000730722.1 | hypothetical protein | Relaxase |
| HUZ84_RS24930 (HUZ84_24710) | 14120..17908 | + | 3789 | WP_239638195.1 | relaxase | - |
| HUZ84_RS24935 (HUZ84_24715) | 17951..18391 | - | 441 | WP_000666084.1 | hypothetical protein | - |
| HUZ84_RS24940 | 19115..19489 | - | 375 | WP_000909825.1 | hypothetical protein | - |
| HUZ84_RS24945 (HUZ84_24725) | 19698..19904 | - | 207 | WP_000850853.1 | hemolysin expression modulator Hha | - |
| HUZ84_RS24950 (HUZ84_24730) | 20023..20361 | - | 339 | WP_000668720.1 | hypothetical protein | - |
| HUZ84_RS24955 (HUZ84_24740) | 20836..22992 | - | 2157 | WP_054173912.1 | type IA DNA topoisomerase | - |
| HUZ84_RS24960 (HUZ84_24745) | 22997..23572 | - | 576 | WP_001303470.1 | hypothetical protein | - |
| HUZ84_RS24965 (HUZ84_24750) | 23742..25418 | - | 1677 | WP_000289347.1 | PcfJ domain-containing protein | - |
| HUZ84_RS24970 (HUZ84_24755) | 25513..26045 | - | 533 | Protein_33 | thermonuclease family protein | - |
| HUZ84_RS24975 (HUZ84_24760) | 26075..26728 | - | 654 | WP_183121777.1 | hypothetical protein | - |
| HUZ84_RS24980 (HUZ84_24765) | 26740..27864 | - | 1125 | WP_000486719.1 | site-specific integrase | - |
| HUZ84_RS24985 (HUZ84_24770) | 28230..29516 | - | 1287 | WP_015057162.1 | hypothetical protein | VF |
| HUZ84_RS24990 (HUZ84_24775) | 29529..30164 | - | 636 | WP_000934979.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| HUZ84_RS24995 (HUZ84_24780) | 30168..30650 | - | 483 | WP_001258095.1 | hypothetical protein | VF |
| HUZ84_RS25000 (HUZ84_24785) | 30716..31273 | - | 558 | WP_000095048.1 | type 4 pilus major pilin | - |
| HUZ84_RS25005 (HUZ84_24790) | 31318..32427 | - | 1110 | WP_000974903.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HUZ84_RS25010 (HUZ84_24795) | 32418..33956 | - | 1539 | WP_000466225.1 | Type II secretion system protein E | VF |
| HUZ84_RS25015 (HUZ84_24800) | 33981..34475 | - | 495 | WP_000912553.1 | hypothetical protein | VF |
| HUZ84_RS25020 (HUZ84_24805) | 34459..35769 | - | 1311 | WP_001454111.1 | type 4b pilus protein PilO2 | - |
| HUZ84_RS25025 (HUZ84_24810) | 35820..37463 | - | 1644 | WP_001035589.1 | Outer membrane lipoprotein BfpB | VF |
| HUZ84_RS25030 (HUZ84_24815) | 37456..37992 | - | 537 | WP_001220543.1 | sigma 54-interacting transcriptional regulator | - |
| HUZ84_RS25035 (HUZ84_24820) | 38039..39997 | - | 1959 | WP_039022943.1 | type IV secretory system conjugative DNA transfer family protein | - |
| HUZ84_RS25040 (HUZ84_24825) | 40013..41068 | - | 1056 | WP_001542006.1 | Type IV secretion system protein VirB11 | VF |
| HUZ84_RS25045 (HUZ84_24830) | 41087..42226 | - | 1140 | WP_001542008.1 | Type IV secretion system protein virB10 | VF |
| HUZ84_RS25050 (HUZ84_24835) | 42216..42986 | - | 771 | WP_001542009.1 | Type IV secretion system protein PtlF | VF |
| HUZ84_RS25055 (HUZ84_24840) | 42983..43717 | - | 735 | WP_000432282.1 | Type IV secretion system protein virB8 | VF |
| HUZ84_RS25060 (HUZ84_24845) | 43883..46240 | - | 2358 | WP_039022942.1 | VirB4 family type IV secretion system protein | - |
| HUZ84_RS25065 (HUZ84_24850) | 46246..46566 | - | 321 | WP_000362080.1 | VirB3 family type IV secretion system protein | - |
| HUZ84_RS25070 | 46637..46927 | - | 291 | WP_000865479.1 | conjugal transfer protein | - |
| HUZ84_RS25075 (HUZ84_24860) | 46927..47511 | - | 585 | WP_001177114.1 | Type IV secretion system protein virB1 | VF |
| HUZ84_RS25080 (HUZ84_24865) | 47532..47930 | - | 399 | WP_001153669.1 | hypothetical protein | - |
| HUZ84_RS25085 (HUZ84_24870) | 48049..48486 | - | 438 | WP_000539665.1 | type IV pilus biogenesis protein PilM | - |
| HUZ84_RS25090 (HUZ84_24875) | 48492..49727 | - | 1236 | WP_039022941.1 | hypothetical protein | VF |
| HUZ84_RS25095 (HUZ84_24880) | 49730..50029 | - | 300 | WP_000835763.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| HUZ84_RS25100 (HUZ84_24885) | 50096..50731 | - | 636 | WP_022645136.1 | hypothetical protein | - |
| HUZ84_RS25105 (HUZ84_24890) | 50779..51570 | + | 792 | WP_022645137.1 | DUF5710 domain-containing protein | - |
| HUZ84_RS25110 (HUZ84_24895) | 51825..52049 | - | 225 | WP_000713561.1 | EexN family lipoprotein | - |
| HUZ84_RS25115 (HUZ84_24900) | 52058..52702 | - | 645 | WP_001310442.1 | hypothetical protein | VF |
| HUZ84_RS25120 (HUZ84_24905) | 52708..53703 | - | 996 | WP_001028541.1 | hypothetical protein | VF |
| HUZ84_RS25125 (HUZ84_24910) | 53707..53964 | - | 258 | WP_000739144.1 | hypothetical protein | - |
| HUZ84_RS25130 (HUZ84_24915) | 53961..54263 | - | 303 | WP_001360345.1 | hypothetical protein | - |
| HUZ84_RS25135 (HUZ84_24920) | 54534..54746 | - | 213 | WP_039022940.1 | hypothetical protein | - |
| HUZ84_RS25140 (HUZ84_24925) | 54757..54927 | - | 171 | WP_000550720.1 | hypothetical protein | - |
| HUZ84_RS25145 (HUZ84_24930) | 54931..55374 | - | 444 | WP_072037179.1 | NfeD family protein | - |
| HUZ84_RS25150 (HUZ84_24935) | 55748..56701 | - | 954 | WP_072109880.1 | SPFH domain-containing protein | - |
| HUZ84_RS25155 (HUZ84_24940) | 56728..56904 | - | 177 | WP_000753050.1 | hypothetical protein | - |
| HUZ84_RS25160 (HUZ84_24945) | 56897..57112 | - | 216 | WP_001127357.1 | DUF1187 family protein | - |
| HUZ84_RS25165 (HUZ84_24950) | 57105..57611 | - | 507 | WP_039022938.1 | CaiF/GrlA family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|