MGE detailed information
MGE type: Conjugative plasmid MGE length: 88969 bp
Accession: NZ_CP055101 Location: 1..88969 Organism: Shigella flexneri strain SWHIN_107 Replicon: plasmid unnamed2
Accession: NZ_CP055101 Location: 1..88969 Organism: Shigella flexneri strain SWHIN_107 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ84_RS24315 (46) | 46..1077 | + | 1032 | WP_000907852.1 | plasmid replication initiator RepA | - |
| HUZ84_RS24320 (1981) | 1981..2265 | + | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| HUZ84_RS24325 (2265) | 2265..2540 | + | 276 | WP_000421259.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HUZ84_RS24330 (2646) | 2646..2927 | + | 282 | WP_001105066.1 | hypothetical protein | - |
| HUZ84_RS24340 (4455) | 4455..4721 | - | 267 | WP_000627832.1 | hypothetical protein | - |
| HUZ84_RS24345 (4721) | 4721..5215 | - | 495 | WP_015058884.1 | hypothetical protein | - |
| HUZ84_RS24350 (5271) | 5271..5873 | - | 603 | WP_000521606.1 | ProQ/FINO family protein | - |
| HUZ84_RS24355 (6049) | 6049..7101 | - | 1053 | WP_000655519.1 | hypothetical protein | - |
| HUZ84_RS24360 (7314) | 7314..7904 | - | 591 | WP_001401589.1 | hypothetical protein | - |
| HUZ84_RS24365 (7904) | 7904..8158 | - | 255 | WP_000343106.1 | hypothetical protein | - |
| HUZ84_RS24370 (8425) | 8425..9924 | + | 1500 | WP_001542563.1 | RES family NAD+ phosphorylase | - |
| HUZ84_RS24375 (9949) | 9949..10812 | - | 864 | WP_000654832.1 | hypothetical protein | - |
| HUZ84_RS24380 (11336) | 11336..11650 | + | 315 | WP_001302628.1 | hypothetical protein | - |
| HUZ84_RS24385 (11712) | 11712..12482 | + | 771 | WP_001302622.1 | hypothetical protein | - |
| HUZ84_RS24390 (12527) | 12527..13312 | + | 786 | WP_234027643.1 | site-specific integrase | - |
| HUZ84_RS24395 (13450) | 13450..13725 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| HUZ84_RS24400 (13719) | 13719..14363 | - | 645 | WP_000633913.1 | division plane positioning ATPase MipZ | - |
| HUZ84_RS24405 (14592) | 14592..15563 | + | 972 | WP_001103690.1 | plasmid segregation protein ParM | - |
| HUZ84_RS24410 (15568) | 15568..15960 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| HUZ84_RS24415 (15965) | 15965..17236 | - | 1272 | WP_000457496.1 | Y-family DNA polymerase | - |
| HUZ84_RS24420 (17236) | 17236..17673 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HUZ84_RS24425 (17670) | 17670..17918 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| HUZ84_RS24430 (18336) | 18336..19238 | + | 903 | WP_001330417.1 | DUF1281 domain-containing protein | - |
| HUZ84_RS24435 (19242) | 19242..19547 | + | 306 | WP_013307862.1 | hypothetical protein | - |
| HUZ84_RS24440 (19623) | 19623..20306 | + | 684 | WP_000086137.1 | DNA methylase | - |
| HUZ84_RS24445 (20307) | 20307..20528 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| HUZ84_RS24450 (20458) | 20458..20976 | + | 519 | WP_223168556.1 | DUF1380 family protein | - |
| HUZ84_RS24455 (21021) | 21021..21791 | + | 771 | WP_052980418.1 | hypothetical protein | - |
| HUZ84_RS24460 (22208) | 22208..22633 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| HUZ84_RS24465 (22680) | 22680..23102 | + | 423 | WP_000271741.1 | DUF1380 family protein | - |
| HUZ84_RS24470 (23099) | 23099..23290 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| HUZ84_RS24475 (24061) | 24061..24588 | + | 528 | WP_001276125.1 | single-stranded DNA-binding protein | - |
| HUZ84_RS24480 (24646) | 24646..24879 | + | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| HUZ84_RS24485 (24938) | 24938..26896 | + | 1959 | WP_073507090.1 | ParB/RepB/Spo0J family partition protein | - |
| HUZ84_RS24490 (26951) | 26951..27385 | + | 435 | WP_000845898.1 | conjugation system SOS inhibitor PsiB | - |
| HUZ84_RS24495 (27382) | 27382..28101 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| HUZ84_RS24500 (28098) | 28098..28694 | + | 597 | WP_000978005.1 | hypothetical protein | - |
| HUZ84_RS24505 (29157) | 29157..29657 | + | 501 | WP_000117627.1 | antirestriction protein ArdA | - |
| HUZ84_RS24510 (30386) | 30386..30820 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| HUZ84_RS24515 (30913) | 30913..31179 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| HUZ84_RS24520 (31244) | 31244..32158 | + | 915 | WP_000038334.1 | Recombination-promoting nuclease RpnA | VF |
| HUZ84_RS24525 (32158) | 32158..32403 | + | 246 | WP_001260884.1 | hypothetical protein | - |
| HUZ84_RS24530 (32434) | 32434..32685 | - | 252 | WP_000148280.1 | helix-turn-helix transcriptional regulator | - |
| HUZ84_RS24535 (33265) | 33265..34113 | + | 849 | WP_001077030.1 | DUF4942 domain-containing protein | - |
| HUZ84_RS24540 (34199) | 34199..34534 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HUZ84_RS24545 (34768) | 34768..35100 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| HUZ84_RS24550 (35111) | 35111..37810 | + | 2700 | WP_006855641.1 | Protein TraI | Relaxase |
| HUZ84_RS24555 (37847) | 37847..40138 | - | 2292 | WP_001289275.1 | F-type conjugative transfer protein TrbC | - |
| HUZ84_RS24560 (40131) | 40131..41201 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| HUZ84_RS24565 (41220) | 41220..42428 | - | 1209 | WP_001383960.1 | IncI1-type conjugal transfer protein TrbA | - |
| HUZ84_RS24570 (42646) | 42646..43599 | - | 954 | WP_021513958.1 | hypothetical protein | - |
| - (43793) | 43793..43850 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (43793) | 43793..43850 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (43793) | 43793..43850 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (43793) | 43793..43850 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| HUZ84_RS24575 (43905) | 43905..44057 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| HUZ84_RS24580 (44129) | 44129..44380 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| HUZ84_RS25515 (44879) | 44879..44974 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| HUZ84_RS24590 (45039) | 45039..45215 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| HUZ84_RS24595 (45547) | 45547..45756 | + | 210 | WP_000062602.1 | HEAT repeat domain-containing protein | - |
| HUZ84_RS24600 (45828) | 45828..46490 | - | 663 | WP_000644792.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HUZ84_RS24605 (46555) | 46555..48723 | - | 2169 | WP_077250315.1 | DotA/TraY family protein | - |
| HUZ84_RS24610 (48820) | 48820..49404 | - | 585 | WP_001037996.1 | IncI1-type conjugal transfer protein TraX | - |
| HUZ84_RS24615 (49433) | 49433..50635 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| HUZ84_RS24620 (50602) | 50602..51216 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| HUZ84_RS24625 (51216) | 51216..54260 | - | 3045 | WP_106108247.1 | IncI1-type conjugal transfer protein TraU | - |
| HUZ84_RS24630 (54350) | 54350..55150 | - | 801 | WP_001164792.1 | IncI1-type conjugal transfer protein TraT | - |
| HUZ84_RS24635 (55134) | 55134..55322 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| HUZ84_RS24640 (55386) | 55386..55790 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| HUZ84_RS24645 (55841) | 55841..56368 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| HUZ84_RS24650 (56368) | 56368..57072 | - | 705 | WP_106108248.1 | IncI1-type conjugal transfer protein TraP | - |
| HUZ84_RS24655 (57072) | 57072..58361 | - | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| HUZ84_RS24660 (58364) | 58364..59347 | - | 984 | WP_021513963.1 | hypothetical protein | VF |
| HUZ84_RS24665 (59358) | 59358..60050 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| HUZ84_RS24670 (60047) | 60047..60394 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| HUZ84_RS24675 (60412) | 60412..64179 | - | 3768 | WP_058649948.1 | DUF5710 domain-containing protein | - |
| HUZ84_RS24680 (64269) | 64269..64820 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| HUZ84_RS24685 (64835) | 64835..65125 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| HUZ84_RS24690 (65122) | 65122..66270 | - | 1149 | WP_001024976.1 | putative protein YggR | VF |
| HUZ84_RS24695 (66267) | 66267..67085 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| HUZ84_RS24700 (67082) | 67082..67540 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| HUZ84_RS24705 (67935) | 67935..68519 | - | 585 | WP_000977520.1 | histidine phosphatase family protein | - |
| HUZ84_RS24710 (68579) | 68579..69781 | - | 1203 | WP_000976357.1 | conjugal transfer protein TraF | - |
| HUZ84_RS24715 (69867) | 69867..70691 | - | 825 | WP_015058912.1 | conjugal transfer protein TraE | - |
| HUZ84_RS24720 (70842) | 70842..71996 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| HUZ84_RS24725 (73629) | 73629..75065 | - | 1437 | WP_015058913.1 | hypothetical protein | VF |
| HUZ84_RS24730 (75053) | 75053..75709 | - | 657 | WP_001193551.1 | hypothetical protein | VF |
| HUZ84_RS24735 (75694) | 75694..76254 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| HUZ84_RS24740 (76264) | 76264..76878 | - | 615 | WP_000908228.1 | hypothetical protein | VF |
| HUZ84_RS24745 (76895) | 76895..77980 | - | 1086 | WP_001208803.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HUZ84_RS24750 (77993) | 77993..79546 | - | 1554 | WP_000362204.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HUZ84_RS24755 (79557) | 79557..80009 | - | 453 | WP_058649963.1 | hypothetical protein | VF |
| HUZ84_RS24760 (79996) | 79996..81291 | - | 1296 | WP_058649964.1 | type 4b pilus protein PilO2 | - |
| HUZ84_RS24765 (81284) | 81284..82966 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| HUZ84_RS24770 (82980) | 82980..83417 | - | 438 | WP_000539811.1 | hypothetical protein | VF |
| HUZ84_RS24775 (83417) | 83417..84484 | - | 1068 | WP_021513968.1 | hypothetical protein | VF |
| HUZ84_RS24780 (85236) | 85236..85490 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| HUZ84_RS24785 (85662) | 85662..86345 | - | 684 | WP_000213863.1 | hypothetical protein | - |
| HUZ84_RS24790 (86599) | 86599..87132 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| HUZ84_RS24795 (87574) | 87574..87861 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| HUZ84_RS24800 (87779) | 87779..88009 | - | 231 | WP_228772074.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|