MGE detailed information
MGE type: Conjugative plasmid MGE length: 69050 bp
Accession: NZ_CP055077 Location: 1..69050 Organism: Shigella flexneri strain SWHIN_116 Replicon: plasmid unnamed2
Accession: NZ_CP055077 Location: 1..69050 Organism: Shigella flexneri strain SWHIN_116 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ90_RS23505 (1) | 1..858 | + | 858 | WP_016240488.1 | incFII family plasmid replication initiator RepA | - |
| HUZ90_RS23510 (1886) | 1886..2194 | - | 309 | Protein_1 | IS91 family transposase ISSbo1 | Transposase |
| HUZ90_RS23515 (2387) | 2387..2485 | + | 99 | WP_137491101.1 | transposase | - |
| HUZ90_RS23520 (2635) | 2635..2901 | - | 267 | WP_239635736.1 | hypothetical protein | - |
| HUZ90_RS23525 (2931) | 2931..3701 | - | 771 | WP_000712166.1 | molybdopterin-dependent oxidoreductase | - |
| HUZ90_RS23530 (3712) | 3712..4311 | - | 600 | WP_001177183.1 | cytochrome b/b6 domain-containing protein | - |
| HUZ90_RS23535 (4453) | 4453..5175 | + | 723 | WP_001057737.1 | Transcriptional regulatory protein WalR | VF |
| HUZ90_RS23540 (5172) | 5172..6644 | + | 1473 | WP_000621194.1 | ATP-binding protein | - |
| HUZ90_RS23545 (7022) | 7022..7189 | - | 168 | Protein_8 | IS110 family transposase | - |
| HUZ90_RS23550 (7243) | 7243..7947 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HUZ90_RS23555 (8082) | 8082..8177 | + | 96 | WP_013362819.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| HUZ90_RS23560 (8303) | 8303..9040 | + | 738 | WP_013362818.1 | rRNA adenine N-6-methyltransferase | ARG |
| HUZ90_RS23565 (9803) | 9803..10500 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| HUZ90_RS23570 (11949) | 11949..12183 | + | 235 | Protein_13 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HUZ90_RS23575 (12311) | 12311..12592 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| HUZ90_RS23580 (12715) | 12715..13065 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| HUZ90_RS23585 (13068) | 13068..14030 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| HUZ90_RS23590 (14177) | 14177..14470 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| HUZ90_RS23595 (14547) | 14547..15230 | + | 684 | WP_000085883.1 | DNA methylase | - |
| HUZ90_RS23600 (15231) | 15231..15452 | + | 222 | WP_001104880.1 | hypothetical protein | - |
| HUZ90_RS23605 (15466) | 15466..15900 | + | 435 | WP_015058992.1 | DUF1380 family protein | - |
| HUZ90_RS23610 (15945) | 15945..16715 | + | 771 | WP_015058993.1 | hypothetical protein | - |
| HUZ90_RS23615 (17128) | 17128..17553 | + | 426 | WP_001198891.1 | antirestriction protein | - |
| HUZ90_RS23620 (17600) | 17600..18022 | + | 423 | WP_000271739.1 | DUF1380 family protein | - |
| HUZ90_RS23625 (18019) | 18019..18210 | + | 192 | WP_001027511.1 | hypothetical protein | - |
| HUZ90_RS23630 (18489) | 18489..18737 | - | 249 | WP_071587243.1 | hypothetical protein | - |
| HUZ90_RS23635 (19253) | 19253..19483 | + | 231 | WP_000218644.1 | hypothetical protein | - |
| HUZ90_RS23640 (19535) | 19535..20896 | + | 1362 | WP_025746315.1 | DUF3560 domain-containing protein | - |
| HUZ90_RS23645 (20943) | 20943..21506 | + | 564 | WP_016240496.1 | class I SAM-dependent methyltransferase | - |
| HUZ90_RS23650 (21592) | 21592..22059 | - | 468 | Protein_29 | hypothetical protein | - |
| HUZ90_RS23655 (22361) | 22361..22888 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| HUZ90_RS23660 (22946) | 22946..23179 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| HUZ90_RS23665 (23240) | 23240..25204 | + | 1965 | WP_117389470.1 | ParB/RepB/Spo0J family partition protein | - |
| HUZ90_RS23670 (25273) | 25273..25707 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| HUZ90_RS23675 (25704) | 25704..26423 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| HUZ90_RS23680 (26444) | 26444..26623 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - (26435) | 26435..26659 | + | 225 | NuclAT_0 | - | - |
| - (26435) | 26435..26659 | + | 225 | NuclAT_0 | - | - |
| - (26435) | 26435..26659 | + | 225 | NuclAT_0 | - | - |
| - (26435) | 26435..26659 | + | 225 | NuclAT_0 | - | - |
| HUZ90_RS23685 (26645) | 26645..26794 | + | 150 | Protein_36 | plasmid maintenance protein Mok | - |
| HUZ90_RS23690 (26736) | 26736..26861 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| HUZ90_RS23695 (27162) | 27162..27458 | - | 297 | Protein_38 | hypothetical protein | - |
| HUZ90_RS23700 (27758) | 27758..28054 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| HUZ90_RS23705 (28165) | 28165..28986 | + | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| HUZ90_RS23710 (29283) | 29283..29885 | - | 603 | WP_000243713.1 | hypothetical protein | VF |
| HUZ90_RS23715 (30206) | 30206..30589 | + | 384 | WP_001151529.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| HUZ90_RS23720 (30781) | 30781..31428 | + | 648 | WP_000332523.1 | transcriptional regulator TraJ family protein | - |
| HUZ90_RS23725 (31548) | 31548..31775 | + | 228 | WP_000589556.1 | conjugal transfer relaxosome protein TraY | - |
| HUZ90_RS23730 (31809) | 31809..32171 | + | 363 | WP_012881131.1 | type IV conjugative transfer system pilin TraA | - |
| HUZ90_RS23735 (32186) | 32186..32497 | + | 312 | WP_000012100.1 | type IV conjugative transfer system protein TraL | - |
| HUZ90_RS23740 (32519) | 32519..33085 | + | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| HUZ90_RS23745 (33072) | 33072..33800 | + | 729 | WP_001230769.1 | type-F conjugative transfer system secretin TraK | - |
| HUZ90_RS23750 (33800) | 33800..35227 | + | 1428 | WP_012881130.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| HUZ90_RS23755 (35217) | 35217..35807 | + | 591 | WP_012881129.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| HUZ90_RS23760 (35794) | 35794..36114 | + | 321 | WP_012881128.1 | conjugal transfer protein TrbD | - |
| HUZ90_RS23765 (36111) | 36111..36626 | + | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HUZ90_RS23770 (36761) | 36761..36982 | + | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| HUZ90_RS23775 (36975) | 36975..37451 | + | 477 | WP_012881127.1 | hypothetical protein | - |
| HUZ90_RS23780 (37550) | 37550..37768 | + | 219 | WP_000556745.1 | hypothetical protein | - |
| HUZ90_RS23785 (37796) | 37796..38143 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| HUZ90_RS23790 (38269) | 38269..40899 | + | 2631 | WP_000069772.1 | type IV secretion system protein TraC | - |
| HUZ90_RS23795 (40896) | 40896..41282 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| HUZ90_RS23800 (41279) | 41279..41911 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| HUZ90_RS23805 (41908) | 41908..42900 | + | 993 | WP_000830849.1 | conjugal transfer pilus assembly protein TraU | - |
| HUZ90_RS23810 (42930) | 42930..43235 | + | 306 | WP_000224418.1 | hypothetical protein | - |
| HUZ90_RS23815 (43244) | 43244..43882 | + | 639 | WP_015058995.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HUZ90_RS23820 (43879) | 43879..45729 | + | 1851 | WP_117389471.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HUZ90_RS23825 (45756) | 45756..46013 | + | 258 | WP_000864353.1 | conjugal transfer protein TrbE | - |
| HUZ90_RS23830 (46006) | 46006..46749 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HUZ90_RS23835 (46763) | 46763..47104 | + | 342 | WP_000556795.1 | conjugal transfer protein TrbA | - |
| HUZ90_RS23840 (47085) | 47085..47420 | - | 336 | WP_000736414.1 | hypothetical protein | - |
| HUZ90_RS23845 (47501) | 47501..47785 | + | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HUZ90_RS23850 (47772) | 47772..48317 | + | 546 | WP_000059830.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HUZ90_RS23855 (48247) | 48247..48594 | + | 348 | WP_011666494.1 | P-type conjugative transfer protein TrbJ | - |
| HUZ90_RS23860 (48575) | 48575..48967 | + | 393 | WP_000659962.1 | F-type conjugal transfer protein TrbF | - |
| HUZ90_RS23865 (48954) | 48954..50327 | + | 1374 | WP_000944331.1 | conjugal transfer pilus assembly protein TraH | - |
| HUZ90_RS23870 (50324) | 50324..53149 | + | 2826 | WP_012881124.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| HUZ90_RS23875 (53146) | 53146..53655 | + | 510 | WP_000628111.1 | conjugal transfer entry exclusion protein TraS | - |
| HUZ90_RS23880 (53669) | 53669..54400 | + | 732 | WP_012881123.1 | conjugal transfer complement resistance protein TraT | - |
| HUZ90_RS23885 (54603) | 54603..55340 | + | 738 | WP_012881122.1 | hypothetical protein | - |
| HUZ90_RS23890 (55391) | 55391..57634 | + | 2244 | WP_110046574.1 | type IV conjugative transfer system coupling protein TraD | - |
| HUZ90_RS23895 (57634) | 57634..62904 | + | 5271 | WP_239635735.1 | Multifunctional conjugation protein TraI | Relaxase |
| HUZ90_RS23900 (62924) | 62924..63670 | + | 747 | WP_059338983.1 | conjugal transfer pilus acetylase TraX | - |
| HUZ90_RS23905 (63729) | 63729..64589 | + | 861 | WP_000704523.1 | putative protein YcjY | VF |
| HUZ90_RS23910 (64692) | 64692..65252 | + | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| HUZ90_RS23915 (65381) | 65381..65593 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| HUZ90_RS23920 (65838) | 65838..66299 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| HUZ90_RS23925 (66345) | 66345..66554 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| HUZ90_RS23930 (66592) | 66592..67182 | + | 591 | WP_033807967.1 | DUF2726 domain-containing protein | - |
| HUZ90_RS23935 (67337) | 67337..67810 | + | 474 | WP_016240489.1 | hypothetical protein | - |
| - (67953) | 67953..68012 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (67953) | 67953..68012 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (67953) | 67953..68012 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (67953) | 67953..68012 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| HUZ90_RS23940 (68057) | 68057..68206 | + | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| HUZ90_RS23945 (68491) | 68491..68739 | + | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| HUZ90_RS23950 (68854) | 68854..69038 | + | 185 | Protein_89 | protein CopA/IncA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|