MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 125787 bp
Accession: NZ_CP055076 Location: 1..125787 Organism: Shigella flexneri strain SWHIN_116 Replicon: plasmid unnamed1
Accession: NZ_CP055076 Location: 1..125787 Organism: Shigella flexneri strain SWHIN_116 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ90_RS22800 (HUZ90_22590) | 1..978 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| HUZ90_RS22805 (HUZ90_22595) | 1263..2003 | - | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| HUZ90_RS22810 (HUZ90_22600) | 2124..2306 | - | 183 | WP_042344623.1 | hypothetical protein | - |
| HUZ90_RS22815 | 2373..2662 | - | 290 | Protein_3 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HUZ90_RS22820 (HUZ90_22605) | 2649..2917 | - | 269 | Protein_4 | type II toxin-antitoxin system ParD family antitoxin | - |
| HUZ90_RS22825 (HUZ90_22610) | 3449..4618 | + | 1170 | WP_001072355.1 | hypothetical protein | - |
| HUZ90_RS22830 (HUZ90_22615) | 4651..4779 | + | 129 | Protein_6 | IS481 family transposase | - |
| HUZ90_RS22835 (HUZ90_22620) | 4814..5107 | - | 294 | WP_001105060.1 | hypothetical protein | - |
| HUZ90_RS22840 (HUZ90_22625) | 5213..5488 | - | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HUZ90_RS22845 (HUZ90_22630) | 5488..5772 | - | 285 | WP_001387467.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| HUZ90_RS22850 (HUZ90_22635) | 6377..7129 | + | 753 | WP_000562172.1 | IclR family transcriptional regulator | - |
| HUZ90_RS22855 (HUZ90_22640) | 7175..8140 | - | 966 | WP_001022265.1 | 2-keto-3-deoxygluconate transporter | - |
| HUZ90_RS22860 (HUZ90_22645) | 8173..8553 | - | 381 | WP_000710783.1 | Rid family detoxifying hydrolase | - |
| HUZ90_RS22865 (HUZ90_22650) | 8578..9468 | - | 891 | WP_001077068.1 | dihydrodipicolinate synthase family protein | - |
| HUZ90_RS22870 | 9701..9895 | - | 195 | WP_000796505.1 | hypothetical protein | - |
| HUZ90_RS22875 (HUZ90_22655) | 9869..10309 | + | 441 | Protein_15 | zinc-binding dehydrogenase | - |
| HUZ90_RS22880 (HUZ90_22660) | 10440..11318 | + | 879 | WP_000338039.1 | sugar ABC transporter permease | - |
| HUZ90_RS22885 (HUZ90_22665) | 11308..12195 | + | 888 | WP_001271561.1 | carbohydrate ABC transporter permease | - |
| HUZ90_RS22890 (HUZ90_22670) | 12206..13030 | + | 825 | WP_000922702.1 | phosphodiesterase | - |
| HUZ90_RS22895 (HUZ90_22675) | 13036..14109 | + | 1074 | WP_000950177.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| HUZ90_RS22900 (HUZ90_22680) | 14102..15412 | + | 1311 | WP_000476108.1 | ABC transporter substrate-binding protein | - |
| HUZ90_RS22905 (HUZ90_22685) | 15471..15779 | - | 309 | Protein_21 | IS4 family transposase ISEc13 | Transposase |
| HUZ90_RS22910 (HUZ90_22690) | 15856..16029 | - | 174 | WP_000338295.1 | Tn3 family transposase | - |
| HUZ90_RS22915 (HUZ90_22695) | 16111..16591 | - | 481 | Protein_23 | IS3 family transposase IS629 | Transposase |
| HUZ90_RS22920 (HUZ90_22700) | 16675..18183 | - | 1509 | WP_001189109.1 | group II intron reverse transcriptase/maturase | - |
| HUZ90_RS22925 (HUZ90_22705) | 18856..19577 | - | 722 | Protein_25 | IS3 family transposase IS629 | Transposase |
| HUZ90_RS22930 (HUZ90_22710) | 19602..20306 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HUZ90_RS22935 (HUZ90_22715) | 20364..20894 | - | 531 | Protein_27 | histidine-type phosphatase | - |
| HUZ90_RS22940 (HUZ90_22720) | 21016..21501 | - | 486 | WP_000874189.1 | hypothetical protein | - |
| HUZ90_RS22945 (HUZ90_22725) | 21526..22011 | - | 486 | WP_001267177.1 | TlpA disulfide reductase family protein | - |
| HUZ90_RS22950 (HUZ90_22730) | 21998..22693 | - | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| HUZ90_RS22955 (HUZ90_22735) | 22698..23828 | - | 1131 | WP_221080797.1 | ABC transporter permease | - |
| HUZ90_RS22960 (HUZ90_22740) | 23818..25101 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
| HUZ90_RS22965 (HUZ90_22745) | 25104..26483 | - | 1380 | WP_000119836.1 | Fe-S-containing protein | - |
| HUZ90_RS22970 (HUZ90_22750) | 26587..27114 | - | 528 | WP_000178050.1 | iron transporter | - |
| HUZ90_RS22975 (HUZ90_22755) | 27155..29041 | - | 1887 | WP_000118029.1 | FTR1 family protein | - |
| HUZ90_RS22980 (HUZ90_22760) | 29388..30149 | - | 762 | WP_001225378.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| HUZ90_RS22985 (HUZ90_22765) | 30386..30892 | - | 507 | WP_000949452.1 | protein disulfide oxidoreductase | - |
| HUZ90_RS22990 (HUZ90_22770) | 30882..31052 | - | 171 | Protein_38 | DsbA family protein | - |
| HUZ90_RS22995 | 31190..31303 | - | 114 | Protein_39 | IS6 family transposase IS15DI | Transposase |
| HUZ90_RS23000 (HUZ90_22775) | 31503..32200 | + | 698 | WP_151884388.1 | IS1 family transposase IS1X2 | Transposase |
| HUZ90_RS23005 (HUZ90_22780) | 32215..33378 | + | 1164 | Protein_41 | IS4 family transposase IS10R | Transposase |
| HUZ90_RS23010 (HUZ90_22785) | 33388..33804 | - | 417 | WP_000275180.1 | Transposon Tn10 TetD protein | VF |
| HUZ90_RS23015 (HUZ90_22790) | 33892..34485 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| HUZ90_RS23020 (HUZ90_22795) | 34598..35803 | - | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| HUZ90_RS23025 (HUZ90_22800) | 35885..36508 | + | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| HUZ90_RS23030 (HUZ90_22805) | 36486..37172 | - | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
| HUZ90_RS23035 (HUZ90_22810) | 37180..37566 | - | 387 | WP_000460651.1 | hypothetical protein | - |
| HUZ90_RS23040 (HUZ90_22815) | 37559..37822 | - | 264 | WP_049802299.1 | antibiotic biosynthesis monooxygenase | - |
| HUZ90_RS23050 (HUZ90_22825) | 38795..39454 | + | 660 | WP_000412211.1 | Chloramphenicol acetyltransferase | ARG |
| HUZ90_RS23055 (HUZ90_22830) | 39655..40032 | - | 378 | WP_000656305.1 | GNAT family N-acetyltransferase | - |
| HUZ90_RS23060 (HUZ90_22835) | 40099..43065 | - | 2967 | WP_181207459.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| HUZ90_RS23065 (HUZ90_22840) | 43068..43361 | - | 294 | Protein_53 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| HUZ90_RS23070 (HUZ90_22845) | 43424..44128 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HUZ90_RS23075 (HUZ90_22850) | 44250..45155 | + | 906 | WP_000219391.1 | hypothetical protein | ARG |
| HUZ90_RS23080 (HUZ90_22855) | 45152..46390 | + | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| HUZ90_RS23085 (HUZ90_22860) | 46390..46974 | + | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| HUZ90_RS23090 (HUZ90_22865) | 47467..48231 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| HUZ90_RS23095 (HUZ90_22870) | 48349..48414 | - | 66 | Protein_59 | EAL domain-containing protein | - |
| HUZ90_RS23100 (HUZ90_22875) | 48458..48763 | - | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| HUZ90_RS23105 (HUZ90_22880) | 48774..49979 | - | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| HUZ90_RS23110 (HUZ90_22885) | 50135..50338 | - | 204 | WP_000376616.1 | hypothetical protein | - |
| HUZ90_RS23115 (HUZ90_22890) | 50466..51305 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| HUZ90_RS23120 (HUZ90_22895) | 51299..51646 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| HUZ90_RS23125 (HUZ90_22900) | 51852..52640 | - | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| HUZ90_RS23130 (HUZ90_22905) | 52771..53244 | - | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| HUZ90_RS23135 (HUZ90_22910) | 53402..54415 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| HUZ90_RS23140 (HUZ90_22915) | 54618..54968 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| HUZ90_RS23145 (HUZ90_22920) | 55094..55372 | + | 279 | Protein_69 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| HUZ90_RS23150 (HUZ90_22925) | 55422..56126 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HUZ90_RS23155 (HUZ90_22930) | 56296..56577 | - | 282 | Protein_71 | IS91 family transposase ISPps1 | Transposase |
| HUZ90_RS23160 (HUZ90_22935) | 56724..57584 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| HUZ90_RS23165 (HUZ90_22940) | 57767..58105 | - | 339 | Protein_73 | recombinase family protein | - |
| HUZ90_RS23170 (HUZ90_22945) | 58169..58873 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HUZ90_RS23175 (HUZ90_22950) | 58923..59642 | + | 720 | Protein_75 | helicase RepA family protein | - |
| HUZ90_RS23180 (HUZ90_22955) | 59629..60480 | + | 852 | WP_000240536.1 | replication protein C, IncQ-type | - |
| HUZ90_RS23185 (HUZ90_22960) | 60790..61605 | + | 816 | WP_001043265.1 | Dihydropteroate synthase | ARG |
| HUZ90_RS23190 (HUZ90_22965) | 61666..62469 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| HUZ90_RS23195 (HUZ90_22970) | 62469..63305 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| HUZ90_RS23200 (HUZ90_22975) | 63366..64070 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HUZ90_RS23205 (HUZ90_22980) | 64221..65036 | + | 816 | WP_000018329.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| HUZ90_RS23210 (HUZ90_22985) | 65226..65930 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HUZ90_RS23215 (HUZ90_22990) | 65995..67245 | - | 1251 | Protein_83 | transposase | - |
| HUZ90_RS23220 | 67320..67403 | - | 84 | Protein_84 | hypothetical protein | - |
| HUZ90_RS23225 (HUZ90_22995) | 67518..67676 | + | 159 | Protein_85 | chromate resistance protein | - |
| HUZ90_RS23230 (HUZ90_23000) | 68304..69675 | - | 1372 | Protein_86 | IS1182 family transposase ISCfr1 | Transposase |
| HUZ90_RS23235 (HUZ90_23005) | 69790..70926 | - | 1137 | WP_000080860.1 | DUF3883 domain-containing protein | - |
| HUZ90_RS23240 (HUZ90_23010) | 70977..71204 | - | 228 | WP_000248278.1 | hypothetical protein | - |
| HUZ90_RS23245 (HUZ90_23015) | 71228..71419 | + | 192 | WP_000951934.1 | hypothetical protein | - |
| HUZ90_RS23250 (HUZ90_23020) | 71901..72443 | - | 543 | WP_000587837.1 | AAA family ATPase | - |
| HUZ90_RS23255 (HUZ90_23025) | 72456..73316 | - | 861 | WP_000557454.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| HUZ90_RS23260 (HUZ90_23030) | 73459..74069 | + | 611 | Protein_92 | IS4 family transposase IS10R | Transposase |
| HUZ90_RS23265 (HUZ90_23035) | 74123..74827 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| HUZ90_RS23270 | 75755..76045 | - | 291 | Protein_94 | DUF262 domain-containing protein | - |
| HUZ90_RS23275 (HUZ90_23045) | 76474..76875 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| HUZ90_RS23280 (HUZ90_23050) | 76808..77065 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| HUZ90_RS23285 (HUZ90_23055) | 77158..77811 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| HUZ90_RS23290 (HUZ90_23060) | 79025..79237 | - | 213 | WP_013023861.1 | hypothetical protein | - |
| HUZ90_RS23295 (HUZ90_23065) | 79368..79730 | - | 363 | Protein_99 | fertility inhibition protein FinO | - |
| HUZ90_RS23300 (HUZ90_23070) | 79726..82977 | - | 3252 | Protein_100 | Multifunctional conjugation protein TraI | Relaxase |
| HUZ90_RS23305 (HUZ90_23075) | 82977..84686 | - | 1710 | WP_239635734.1 | type IV conjugative transfer system coupling protein TraD | - |
| HUZ90_RS23310 (HUZ90_23080) | 84670..86334 | - | 1665 | Protein_102 | conjugal transfer mating-pair stabilization protein TraG | - |
| HUZ90_RS23315 (HUZ90_23085) | 86414..86866 | - | 453 | Protein_103 | DNA methyltransferase | - |
| HUZ90_RS23320 (HUZ90_23090) | 86943..87254 | - | 312 | WP_011254640.1 | hypothetical protein | - |
| HUZ90_RS23325 (HUZ90_23095) | 87251..88153 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| HUZ90_RS23330 (HUZ90_23100) | 89020..89991 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| HUZ90_RS23335 (HUZ90_23105) | 89991..91157 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| HUZ90_RS23340 (HUZ90_23110) | 91745..92500 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| HUZ90_RS23345 (HUZ90_23115) | 93274..94080 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| HUZ90_RS23350 (HUZ90_23120) | 94081..94386 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| HUZ90_RS23355 (HUZ90_23125) | 94388..94606 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| HUZ90_RS23360 (HUZ90_23130) | 95173..95685 | + | 513 | WP_000151784.1 | hypothetical protein | - |
| HUZ90_RS23365 (HUZ90_23135) | 95719..96852 | - | 1134 | WP_001542067.1 | DUF3800 domain-containing protein | - |
| HUZ90_RS23370 (HUZ90_23140) | 97019..97792 | - | 774 | WP_000905949.1 | hypothetical protein | - |
| HUZ90_RS23375 (HUZ90_23145) | 97805..98305 | - | 501 | WP_000528931.1 | HEPN family nuclease | - |
| HUZ90_RS23380 (HUZ90_23150) | 98570..98800 | + | 231 | WP_001261278.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| HUZ90_RS23385 (HUZ90_23155) | 98797..99213 | + | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HUZ90_RS23390 (HUZ90_23160) | 99258..103052 | - | 3795 | WP_001144732.1 | hypothetical protein | - |
| HUZ90_RS23395 (HUZ90_23165) | 103433..103663 | + | 231 | WP_001261286.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| HUZ90_RS23400 (HUZ90_23170) | 103660..104076 | + | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HUZ90_RS23405 (HUZ90_23175) | 104151..105716 | + | 1566 | WP_001128474.1 | AAA family ATPase | - |
| HUZ90_RS23410 (HUZ90_23180) | 105701..106723 | + | 1023 | WP_000361402.1 | helicase UvrD | - |
| HUZ90_RS23420 (HUZ90_23190) | 108054..110249 | - | 2196 | WP_169254050.1 | Ferric aerobactin receptor | VF |
| HUZ90_RS23425 (HUZ90_23195) | 110281..111614 | - | 1334 | Protein_125 | L-lysine N6-monooxygenase | VF |
| HUZ90_RS23430 (HUZ90_23200) | 111611..113353 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| HUZ90_RS23435 (HUZ90_23205) | 113353..114300 | - | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| HUZ90_RS23440 (HUZ90_23210) | 114301..116025 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| HUZ90_RS23445 (HUZ90_23215) | 116161..117354 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| HUZ90_RS23450 (HUZ90_23220) | 117734..118114 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| HUZ90_RS23455 (HUZ90_23225) | 118455..118868 | - | 414 | Protein_131 | phosphopyruvate hydratase | - |
| HUZ90_RS23460 (HUZ90_23230) | 118866..119123 | + | 258 | Protein_132 | Tn3 family transposase | - |
| HUZ90_RS23465 (HUZ90_23235) | 119357..120214 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| HUZ90_RS23470 (HUZ90_23240) | 120211..121068 | - | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| HUZ90_RS23475 (HUZ90_23245) | 121065..121892 | - | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| HUZ90_RS23480 (HUZ90_23250) | 121892..122806 | - | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| HUZ90_RS23485 (HUZ90_23255) | 123162..123859 | + | 698 | WP_223155668.1 | IS1 family transposase IS1S | Transposase |
| HUZ90_RS23490 (HUZ90_23260) | 124039..124552 | - | 514 | Protein_138 | DUF4113 domain-containing protein | - |
| HUZ90_RS23495 (HUZ90_23265) | 124613..124717 | - | 105 | Protein_139 | AAA family ATPase | - |
| HUZ90_RS23500 (HUZ90_23270) | 124719..125042 | - | 324 | Protein_140 | IS21 family transposase IS21 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|