MGE detailed information
MGE type: Prophage MGE length: 85208 bp
Accession: NZ_CP055000 Location: 3665253..3750460 Organism: Shigella flexneri strain STIN_80 Replicon: chromosome
Accession: NZ_CP055000 Location: 3665253..3750460 Organism: Shigella flexneri strain STIN_80 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ55_RS18140 (3663611) | 3663611..3663700 | + | 90 | Protein_3568 | hypothetical protein | - |
| HUZ55_RS18145 (3664174) | 3664174..3664275 | + | 102 | WP_000662258.1 | small membrane protein YkgR | - |
| HUZ55_RS18150 (3664639) | 3664639..3664902 | + | 264 | WP_000803998.1 | type B 50S ribosomal protein L31 | - |
| HUZ55_RS18155 (3664902) | 3664902..3665042 | + | 141 | WP_000866436.1 | type B 50S ribosomal protein L36 | - |
| HUZ55_RS18160 (3665077) | 3665077..3665241 | - | 165 | Protein_3572 | protein YkgL | - |
| HUZ55_RS18170 (3666858) | 3666858..3668495 | + | 1638 | WP_072275156.1 | hypothetical protein | - |
| HUZ55_RS18175 (3668582) | 3668582..3669178 | - | 597 | WP_001384291.1 | hypothetical protein | - |
| HUZ55_RS18180 (3669870) | 3669870..3670301 | + | 432 | WP_000749408.1 | hypothetical protein | - |
| HUZ55_RS18190 (3671923) | 3671923..3672255 | - | 333 | WP_023147381.1 | FlxA-like family protein | - |
| HUZ55_RS18195 (3672458) | 3672458..3672673 | - | 216 | Protein_3579 | protein YdfV | - |
| HUZ55_RS18200 (3673111) | 3673111..3675000 | + | 1890 | WP_032193087.1 | DUF262 domain-containing protein | - |
| HUZ55_RS18205 (3675102) | 3675102..3675224 | - | 123 | Protein_3581 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| HUZ55_RS18210 (3675251) | 3675251..3675625 | + | 375 | WP_023147383.1 | hypothetical protein | - |
| HUZ55_RS18215 (3675625) | 3675625..3676068 | + | 444 | WP_001515122.1 | tail fiber assembly protein | - |
| HUZ55_RS18220 (3676040) | 3676040..3676450 | - | 411 | WP_001515121.1 | tail assembly chaperone | - |
| HUZ55_RS18225 (3677074) | 3677074..3677376 | - | 303 | Protein_3585 | protein StfP | - |
| HUZ55_RS18230 (3677380) | 3677380..3677964 | - | 585 | WP_000383536.1 | YmfQ family protein | - |
| HUZ55_RS18235 (3677955) | 3677955..3679013 | - | 1059 | WP_023147736.1 | baseplate J/gp47 family protein | - |
| HUZ55_RS18240 (3679000) | 3679000..3679425 | - | 426 | WP_016244980.1 | phage GP46 family protein | - |
| HUZ55_RS18245 (3679425) | 3679425..3679973 | - | 549 | WP_001259084.1 | phage baseplate assembly protein V | - |
| HUZ55_RS18250 (3679973) | 3679973..3681052 | - | 1080 | WP_239592390.1 | baseplate protein | - |
| HUZ55_RS18255 (3681049) | 3681049..3682377 | - | 1329 | WP_032193238.1 | DNA circularization N-terminal domain-containing protein | - |
| HUZ55_RS18260 (3682438) | 3682438..3684273 | - | 1836 | WP_016244982.1 | phage tail tape measure protein | - |
| HUZ55_RS18265 (3684415) | 3684415..3684684 | - | 270 | WP_000661054.1 | phage tail assembly protein | - |
| HUZ55_RS18270 (3684684) | 3684684..3685040 | - | 357 | WP_000090998.1 | phage tail tube protein | - |
| HUZ55_RS18275 (3685040) | 3685040..3686536 | - | 1497 | WP_016244983.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| HUZ55_RS18280 (3686520) | 3686520..3686690 | - | 171 | WP_000497751.1 | DUF2635 domain-containing protein | - |
| HUZ55_RS18285 (3686699) | 3686699..3687259 | - | 561 | WP_016244984.1 | hypothetical protein | - |
| HUZ55_RS18290 (3687256) | 3687256..3687762 | - | 507 | WP_000213503.1 | hypothetical protein | - |
| HUZ55_RS18295 (3687737) | 3687737..3688147 | - | 411 | WP_023147732.1 | phage head closure protein | - |
| HUZ55_RS18300 (3688144) | 3688144..3688467 | - | 324 | WP_000927711.1 | head-tail connector protein | - |
| HUZ55_RS18305 (3688470) | 3688470..3688670 | - | 201 | WP_000601360.1 | hypothetical protein | - |
| HUZ55_RS18310 (3688720) | 3688720..3689925 | - | 1206 | WP_000257519.1 | phage major capsid protein | - |
| HUZ55_RS18315 (3689940) | 3689940..3690590 | - | 651 | WP_016244986.1 | HK97 family phage prohead protease | - |
| HUZ55_RS18320 (3690568) | 3690568..3691809 | - | 1242 | WP_023147731.1 | phage portal protein | - |
| HUZ55_RS18325 (3691809) | 3691809..3691991 | - | 183 | WP_000605606.1 | protein YmfR | - |
| HUZ55_RS18330 (3692003) | 3692003..3693736 | - | 1734 | WP_000088154.1 | terminase large subunit | - |
| HUZ55_RS18335 (3693733) | 3693733..3694227 | - | 495 | WP_000929173.1 | phage terminase small subunit P27 family | - |
| HUZ55_RS18340 (3694353) | 3694353..3694703 | - | 351 | WP_021519684.1 | HNH endonuclease | - |
| HUZ55_RS18345 (3694761) | 3694761..3695267 | - | 507 | WP_021519683.1 | hypothetical protein | - |
| HUZ55_RS18350 (3695472) | 3695472..3695720 | - | 249 | WP_122985904.1 | peptidase | - |
| HUZ55_RS18355 (3695605) | 3695605..3695997 | - | 393 | WP_032193237.1 | DUF2570 domain-containing protein | - |
| HUZ55_RS18360 (3695981) | 3695981..3696457 | - | 477 | WP_016236818.1 | glycoside hydrolase family protein | - |
| HUZ55_RS18365 (3696461) | 3696461..3696796 | - | 336 | WP_001120501.1 | phage holin, lambda family | - |
| HUZ55_RS18370 (3696933) | 3696933..3697235 | - | 303 | Protein_3614 | site-specific DNA-methyltransferase | - |
| HUZ55_RS18375 (3697505) | 3697505..3697690 | - | 186 | WP_000680348.1 | hypothetical protein | - |
| HUZ55_RS18380 (3697882) | 3697882..3698424 | - | 543 | WP_021519681.1 | hypothetical protein | - |
| HUZ55_RS18385 (3698636) | 3698636..3699388 | - | 753 | WP_021519680.1 | antitermination protein | - |
| HUZ55_RS18390 (3699402) | 3699402..3700391 | - | 990 | WP_001360050.1 | DUF968 domain-containing protein | - |
| HUZ55_RS18395 (3700399) | 3700399..3701196 | - | 798 | WP_001061403.1 | KilA-N domain-containing protein | - |
| HUZ55_RS18400 (3701216) | 3701216..3701605 | - | 390 | WP_000767095.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HUZ55_RS18405 (3701602) | 3701602..3701928 | - | 327 | WP_021549921.1 | LexA repressor | - |
| HUZ55_RS18410 (3701925) | 3701925..3702578 | - | 654 | WP_015364417.1 | phage N-6-adenine-methyltransferase | - |
| HUZ55_RS18415 (3702578) | 3702578..3703072 | - | 495 | WP_072176118.1 | PerC family transcriptional regulator | - |
| HUZ55_RS18420 (3703069) | 3703069..3704010 | - | 942 | WP_000104954.1 | helix-turn-helix domain-containing protein | - |
| HUZ55_RS18425 (3704000) | 3704000..3704179 | - | 180 | WP_001250269.1 | DUF4222 domain-containing protein | - |
| HUZ55_RS18430 (3704355) | 3704355..3704906 | - | 552 | WP_001434539.1 | protein YmfL | - |
| HUZ55_RS18435 (3704944) | 3704944..3705144 | - | 201 | WP_000205494.1 | Cro/CI family transcriptional regulator | - |
| HUZ55_RS18440 (3705242) | 3705242..3705868 | + | 627 | WP_000450735.1 | LexA family transcriptional regulator | - |
| HUZ55_RS18445 (3706075) | 3706075..3706350 | + | 276 | WP_021563905.1 | hypothetical protein | - |
| HUZ55_RS18450 (3706626) | 3706626..3706945 | + | 320 | Protein_3630 | hypothetical protein | - |
| HUZ55_RS18455 (3707027) | 3707027..3707563 | + | 537 | WP_000008202.1 | 5'-deoxynucleotidase | - |
| HUZ55_RS18460 (3707554) | 3707554..3707916 | + | 363 | WP_001242749.1 | phage protein | - |
| HUZ55_RS18465 (3707916) | 3707916..3708212 | + | 297 | WP_001519505.1 | hypothetical protein | - |
| HUZ55_RS18470 (3708212) | 3708212..3708562 | + | 351 | WP_000433939.1 | helix-turn-helix domain-containing protein | - |
| HUZ55_RS18475 (3708484) | 3708484..3709602 | + | 1119 | WP_223716396.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HUZ55_RS18485 (3709807) | 3709807..3711060 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| HUZ55_RS18490 (3711072) | 3711072..3712175 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| HUZ55_RS18495 (3712463) | 3712463..3713518 | + | 1056 | WP_000749881.1 | phosphoporin PhoE | - |
| HUZ55_RS18500 (3713557) | 3713557..3713958 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| - (3714676) | 3714676..3714756 | - | 81 | NuclAT_12 | - | - |
| - (3714676) | 3714676..3714756 | - | 81 | NuclAT_12 | - | - |
| - (3714676) | 3714676..3714756 | - | 81 | NuclAT_12 | - | - |
| - (3714676) | 3714676..3714756 | - | 81 | NuclAT_12 | - | - |
| HUZ55_RS18505 (3714016) | 3714016..3715260 | - | 1245 | WP_000189541.1 | esterase FrsA | - |
| HUZ55_RS18510 (3715352) | 3715352..3715810 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| HUZ55_RS18515 (3716071) | 3716071..3717528 | + | 1458 | WP_096037973.1 | cytosol nonspecific dipeptidase | - |
| HUZ55_RS18520 (3717585) | 3717585..3718106 | - | 522 | Protein_3643 | peptide chain release factor H | - |
| HUZ55_RS18525 (3718105) | 3718105..3718308 | - | 204 | Protein_3644 | RtcB family protein | - |
| HUZ55_RS18530 (3718554) | 3718554..3719006 | - | 453 | WP_001059847.1 | GNAT family N-acetyltransferase | - |
| HUZ55_RS18535 (3719016) | 3719016..3719414 | - | 399 | WP_089578406.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| HUZ55_RS18540 (3719417) | 3719417..3719710 | - | 294 | WP_000554757.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| HUZ55_RS18545 (3719762) | 3719762..3720817 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| HUZ55_RS18550 (3720888) | 3720888..3721673 | - | 786 | WP_072132640.1 | Chemotaxis protein LafU | VF |
| HUZ55_RS18555 (3721645) | 3721645..3723357 | + | 1713 | Protein_3650 | Flagellar biosynthesis protein FlhA | VF |
| HUZ55_RS18560 (3723573) | 3723573..3724070 | - | 498 | WP_000006261.1 | REP-associated tyrosine transposase RayT | - |
| HUZ55_RS18565 (3724246) | 3724246..3725019 | - | 774 | WP_001353765.1 | Murein DD-endopeptidase MepH | VF |
| HUZ55_RS18570 (3725205) | 3725205..3725465 | + | 261 | WP_000729704.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| HUZ55_RS18575 (3725468) | 3725468..3725746 | + | 279 | WP_000615979.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| HUZ55_RS18580 (3725902) | 3725902..3726642 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| HUZ55_RS18585 (3726613) | 3726613..3727380 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| HUZ55_RS18590 (3727586) | 3727586..3728164 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| HUZ55_RS18595 (3728404) | 3728404..3730848 | + | 2445 | WP_000973083.1 | Acyl-coenzyme A dehydrogenase | VF |
| HUZ55_RS18600 (3730891) | 3730891..3731337 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| HUZ55_RS18605 (3731518) | 3731518..3732288 | + | 771 | WP_001741226.1 | 2-oxoglutaramate amidase | - |
| HUZ55_RS18610 (3732345) | 3732345..3732509 | - | 165 | Protein_3661 | ISAs1 family transposase | - |
| HUZ55_RS18620 (3733290) | 3733290..3733733 | + | 444 | WP_023281868.1 | protein YkfM | - |
| HUZ55_RS18625 (3733870) | 3733870..3734655 | - | 786 | WP_001053630.1 | hypothetical protein | - |
| HUZ55_RS18635 (3735194) | 3735194..3735925 | - | 732 | WP_001300756.1 | DNA polymerase III subunit epsilon | - |
| HUZ55_RS18640 (3735990) | 3735990..3736457 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| HUZ55_RS18645 (3736454) | 3736454..3737176 | - | 723 | WP_024250553.1 | class I SAM-dependent methyltransferase | - |
| HUZ55_RS18650 (3737210) | 3737210..3737965 | + | 756 | WP_001052717.1 | hydroxyacylglutathione hydrolase | - |
| HUZ55_RS18655 (3738037) | 3738037..3739395 | + | 1359 | WP_000644685.1 | Membrane-bound lytic murein transglycosylase D | VF |
| HUZ55_RS18660 (3739443) | 3739443..3740039 | - | 597 | Protein_3670 | methyltransferase domain-containing protein | - |
| HUZ55_RS18665 (3740070) | 3740070..3740870 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| HUZ55_RS18670 (3741111) | 3741111..3742025 | + | 915 | WP_001741212.1 | HTH-type transcriptional regulator DmlR | VF |
| HUZ55_RS18675 (3742022) | 3742022..3742825 | - | 804 | WP_000997033.1 | 2,5-didehydrogluconate reductase DkgB | - |
| HUZ55_RS18710 (3748669) | 3748669..3749241 | - | 573 | WP_001140174.1 | D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase | VF |
| HUZ55_RS18715 (3749429) | 3749429..3750460 | + | 1032 | WP_000593994.1 | Methionine import ATP-binding protein MetN | VF |
| HUZ55_RS18720 (3750453) | 3750453..3751106 | + | 654 | WP_001294600.1 | methionine ABC transporter permease MetI | - |
| HUZ55_RS18725 (3751146) | 3751146..3751961 | + | 816 | WP_000874224.1 | methionine ABC transporter substrate-binding lipoprotein MetQ | - |
| HUZ55_RS18730 (3752079) | 3752079..3752483 | + | 405 | WP_001202329.1 | Rcs stress response system protein RcsF | - |
| HUZ55_RS18735 (3752480) | 3752480..3753187 | + | 708 | WP_000094031.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| HUZ55_RS18740 (3753298) | 3753298..3755016 | + | 1719 | WP_001260712.1 | proline--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|