MGE detailed information
MGE type: IScluster/Tn MGE length: 27011 bp
Accession: NZ_CP054993 Location: 2268..29278 Organism: Shigella flexneri strain STIN_87 Replicon: plasmid unnamed1
Accession: NZ_CP054993 Location: 2268..29278 Organism: Shigella flexneri strain STIN_87 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ57_RS23255 (1) | 1..858 | + | 858 | WP_042634321.1 | incFII family plasmid replication initiator RepA | - |
| HUZ57_RS23260 (1775) | 1775..2044 | + | 270 | WP_069192543.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| HUZ57_RS23265 (2044) | 2044..2328 | + | 285 | WP_096217460.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| HUZ57_RS23270 (2295) | 2295..2573 | + | 279 | Protein_3 | IS66 family transposase ISCro1 | Transposase |
| HUZ57_RS23275 (2593) | 2593..4164 | + | 1572 | WP_062873784.1 | IS66 family transposase ISCro1 | Transposase |
| HUZ57_RS23280 (4199) | 4199..4528 | - | 330 | Protein_5 | oxidoreductase | - |
| HUZ57_RS23285 (4528) | 4528..5488 | - | 961 | Protein_6 | IS3 family transposase | - |
| HUZ57_RS23290 (5876) | 5876..6091 | - | 216 | WP_015056453.1 | heat-stable enterotoxin ST-II | - |
| HUZ57_RS23295 (6519) | 6519..7706 | - | 1188 | WP_042634447.1 | IS91 family transposase ISEc37 | Transposase |
| HUZ57_RS23300 (7706) | 7706..8071 | - | 366 | WP_000124135.1 | hypothetical protein | - |
| HUZ57_RS23305 (8106) | 8106..8564 | - | 459 | Protein_10 | transposase | - |
| HUZ57_RS23310 (8642) | 8642..8791 | - | 150 | Protein_11 | IS3 family transposase ISKpn37 | Transposase |
| HUZ57_RS23315 (9299) | 9299..9517 | + | 219 | WP_001353651.1 | Heat-stable enterotoxin ST-IA/ST-P | VF |
| HUZ57_RS23325 (11101) | 11101..11493 | - | 393 | Protein_14 | IS21 family transposase IS21 | Transposase |
| HUZ57_RS23330 (11493) | 11493..12665 | - | 1173 | WP_015056461.1 | IS21 family transposase IS21 | Transposase |
| HUZ57_RS23335 (12932) | 12932..13201 | + | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| HUZ57_RS23340 (13201) | 13201..13479 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| HUZ57_RS23345 (13826) | 13826..14929 | + | 1104 | WP_239612379.1 | YiiX/YebB-like N1pC/P60 family cysteine hydrolase | - |
| HUZ57_RS23350 (15018) | 15018..15323 | + | 306 | WP_000482654.1 | hypothetical protein | VF |
| HUZ57_RS23360 (16204) | 16204..17184 | + | 981 | WP_000019440.1 | IS5 family transposase ISKpn26 | Transposase |
| HUZ57_RS23365 (17367) | 17367..18595 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| HUZ57_RS23370 (19148) | 19148..23239 | + | 4092 | WP_032491197.1 | Serine protease SepA autotransporter | VF |
| HUZ57_RS23375 (23481) | 23481..23597 | + | 117 | Protein_24 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS23380 (23685) | 23685..24110 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS23385 (24107) | 24107..24457 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS23390 (24488) | 24488..26101 | + | 1614 | WP_000080200.1 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS23400 (26862) | 26862..28475 | - | 1614 | WP_000080200.1 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS23405 (28506) | 28506..28856 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS23410 (28853) | 28853..29278 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS23415 (29425) | 29425..30066 | + | 642 | WP_062873858.1 | toll/interleukin-1 receptor domain-containing protein | - |
| HUZ57_RS23420 (30208) | 30208..30603 | - | 396 | WP_000445930.1 | plasmid partitioning/stability family protein | - |
| HUZ57_RS23425 (30603) | 30603..31562 | - | 960 | WP_000921958.1 | plasmid segregation protein ParM | - |
| HUZ57_RS23430 (32001) | 32001..32903 | + | 903 | WP_077628577.1 | DUF1281 domain-containing protein | - |
| HUZ57_RS23435 (32907) | 32907..33212 | + | 306 | WP_063085138.1 | hypothetical protein | - |
| HUZ57_RS23440 (33289) | 33289..33972 | + | 684 | WP_000085944.1 | DNA methylase | - |
| HUZ57_RS23445 (33973) | 33973..34194 | + | 222 | WP_001104879.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|