MGE detailed information
MGE type: Conjugative plasmid MGE length: 86160 bp
Accession: NZ_CP054993 Location: 1..86160 Organism: Shigella flexneri strain STIN_87 Replicon: plasmid unnamed1
Accession: NZ_CP054993 Location: 1..86160 Organism: Shigella flexneri strain STIN_87 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ57_RS23255 (1) | 1..858 | + | 858 | WP_042634321.1 | incFII family plasmid replication initiator RepA | - |
| HUZ57_RS23260 (1775) | 1775..2044 | + | 270 | WP_069192543.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| HUZ57_RS23265 (2044) | 2044..2328 | + | 285 | WP_096217460.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| HUZ57_RS23270 (2295) | 2295..2573 | + | 279 | Protein_3 | IS66 family transposase ISCro1 | Transposase |
| HUZ57_RS23275 (2593) | 2593..4164 | + | 1572 | WP_062873784.1 | IS66 family transposase ISCro1 | Transposase |
| HUZ57_RS23280 (4199) | 4199..4528 | - | 330 | Protein_5 | oxidoreductase | - |
| HUZ57_RS23285 (4528) | 4528..5488 | - | 961 | Protein_6 | IS3 family transposase | - |
| HUZ57_RS23290 (5876) | 5876..6091 | - | 216 | WP_015056453.1 | heat-stable enterotoxin ST-II | - |
| HUZ57_RS23295 (6519) | 6519..7706 | - | 1188 | WP_042634447.1 | IS91 family transposase ISEc37 | Transposase |
| HUZ57_RS23300 (7706) | 7706..8071 | - | 366 | WP_000124135.1 | hypothetical protein | - |
| HUZ57_RS23305 (8106) | 8106..8564 | - | 459 | Protein_10 | transposase | - |
| HUZ57_RS23310 (8642) | 8642..8791 | - | 150 | Protein_11 | IS3 family transposase ISKpn37 | Transposase |
| HUZ57_RS23315 (9299) | 9299..9517 | + | 219 | WP_001353651.1 | Heat-stable enterotoxin ST-IA/ST-P | VF |
| HUZ57_RS23325 (11101) | 11101..11493 | - | 393 | Protein_14 | IS21 family transposase IS21 | Transposase |
| HUZ57_RS23330 (11493) | 11493..12665 | - | 1173 | WP_015056461.1 | IS21 family transposase IS21 | Transposase |
| HUZ57_RS23335 (12932) | 12932..13201 | + | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| HUZ57_RS23340 (13201) | 13201..13479 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| HUZ57_RS23345 (13826) | 13826..14929 | + | 1104 | WP_239612379.1 | YiiX/YebB-like N1pC/P60 family cysteine hydrolase | - |
| HUZ57_RS23350 (15018) | 15018..15323 | + | 306 | WP_000482654.1 | hypothetical protein | VF |
| HUZ57_RS23360 (16204) | 16204..17184 | + | 981 | WP_000019440.1 | IS5 family transposase ISKpn26 | Transposase |
| HUZ57_RS23365 (17367) | 17367..18595 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| HUZ57_RS23370 (19148) | 19148..23239 | + | 4092 | WP_032491197.1 | Serine protease SepA autotransporter | VF |
| HUZ57_RS23375 (23481) | 23481..23597 | + | 117 | Protein_24 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS23380 (23685) | 23685..24110 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS23385 (24107) | 24107..24457 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS23390 (24488) | 24488..26101 | + | 1614 | WP_000080200.1 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS23400 (26862) | 26862..28475 | - | 1614 | WP_000080200.1 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS23405 (28506) | 28506..28856 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS23410 (28853) | 28853..29278 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS23415 (29425) | 29425..30066 | + | 642 | WP_062873858.1 | toll/interleukin-1 receptor domain-containing protein | - |
| HUZ57_RS23420 (30208) | 30208..30603 | - | 396 | WP_000445930.1 | plasmid partitioning/stability family protein | - |
| HUZ57_RS23425 (30603) | 30603..31562 | - | 960 | WP_000921958.1 | plasmid segregation protein ParM | - |
| HUZ57_RS23430 (32001) | 32001..32903 | + | 903 | WP_077628577.1 | DUF1281 domain-containing protein | - |
| HUZ57_RS23435 (32907) | 32907..33212 | + | 306 | WP_063085138.1 | hypothetical protein | - |
| HUZ57_RS23440 (33289) | 33289..33972 | + | 684 | WP_000085944.1 | DNA methylase | - |
| HUZ57_RS23445 (33973) | 33973..34194 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| HUZ57_RS23450 (34175) | 34175..34642 | + | 468 | WP_236323724.1 | DUF1380 family protein | - |
| HUZ57_RS23455 (34693) | 34693..35469 | + | 777 | WP_239612380.1 | hypothetical protein | - |
| HUZ57_RS23460 (35884) | 35884..36309 | + | 426 | WP_052898751.1 | antirestriction protein | - |
| HUZ57_RS23465 (36356) | 36356..36778 | + | 423 | WP_001613000.1 | DUF1380 family protein | - |
| HUZ57_RS23470 (36775) | 36775..36966 | + | 192 | WP_062873855.1 | hypothetical protein | - |
| HUZ57_RS23475 (37162) | 37162..37389 | + | 228 | WP_071776744.1 | hypothetical protein | - |
| HUZ57_RS23480 (38004) | 38004..38234 | + | 231 | WP_001537563.1 | hypothetical protein | - |
| HUZ57_RS23485 (38286) | 38286..39647 | + | 1362 | WP_063078170.1 | DUF3560 domain-containing protein | - |
| HUZ57_RS23490 (39694) | 39694..40257 | + | 564 | WP_042634411.1 | class I SAM-dependent methyltransferase | - |
| HUZ57_RS23495 (40845) | 40845..41051 | + | 207 | WP_000547945.1 | hypothetical protein | - |
| HUZ57_RS23500 (41077) | 41077..41607 | + | 531 | WP_032214168.1 | single-stranded DNA-binding protein | - |
| HUZ57_RS23505 (41663) | 41663..41896 | + | 234 | WP_000005971.1 | DUF905 domain-containing protein | - |
| HUZ57_RS23510 (41960) | 41960..43918 | + | 1959 | WP_239612381.1 | ParB/RepB/Spo0J family partition protein | - |
| HUZ57_RS23515 (43973) | 43973..44407 | + | 435 | WP_042634413.1 | conjugation system SOS inhibitor PsiB | - |
| HUZ57_RS23520 (44404) | 44404..45190 | + | 787 | Protein_53 | plasmid SOS inhibition protein A | - |
| - (45135) | 45135..45352 | + | 218 | NuclAT_0 | - | - |
| - (45135) | 45135..45352 | + | 218 | NuclAT_0 | - | - |
| - (45135) | 45135..45352 | + | 218 | NuclAT_0 | - | - |
| - (45135) | 45135..45352 | + | 218 | NuclAT_0 | - | - |
| - (45135) | 45135..45352 | - | 218 | NuclAT_0 | - | - |
| HUZ57_RS23525 (45340) | 45340..45492 | + | 153 | Protein_54 | DUF5431 family protein | - |
| HUZ57_RS23530 (45437) | 45437..45559 | + | 123 | WP_223163518.1 | Hok/Gef family protein | - |
| HUZ57_RS23535 (45860) | 45860..46156 | - | 297 | Protein_56 | hypothetical protein | - |
| HUZ57_RS23540 (46380) | 46380..46676 | + | 297 | WP_001272240.1 | hypothetical protein | - |
| HUZ57_RS23545 (46782) | 46782..47603 | + | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| HUZ57_RS23550 (47900) | 47900..48547 | - | 648 | WP_000601040.1 | hypothetical protein | VF |
| HUZ57_RS23555 (48823) | 48823..49206 | + | 384 | WP_001151530.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| HUZ57_RS23560 (49398) | 49398..50045 | + | 648 | WP_000338012.1 | transcriptional regulator TraJ family protein | - |
| HUZ57_RS23565 (50165) | 50165..50392 | + | 228 | WP_000589558.1 | conjugal transfer relaxosome protein TraY | - |
| HUZ57_RS23570 (50426) | 50426..50788 | + | 363 | WP_033566647.1 | type IV conjugative transfer system pilin TraA | - |
| HUZ57_RS23575 (50793) | 50793..51104 | + | 312 | WP_000012101.1 | type IV conjugative transfer system protein TraL | - |
| HUZ57_RS23580 (51126) | 51126..51692 | + | 567 | WP_000399793.1 | type IV conjugative transfer system protein TraE | - |
| HUZ57_RS23585 (51679) | 51679..52407 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| HUZ57_RS23590 (52407) | 52407..53834 | + | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| HUZ57_RS23595 (53824) | 53824..54396 | + | 573 | WP_063078161.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| HUZ57_RS23600 (54393) | 54393..54590 | + | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| HUZ57_RS23605 (54602) | 54602..54853 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| HUZ57_RS23610 (54850) | 54850..55365 | + | 516 | WP_000809906.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HUZ57_RS23615 (55500) | 55500..55721 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| HUZ57_RS23620 (55881) | 55881..58508 | + | 2628 | WP_001064243.1 | type IV secretion system protein TraC | - |
| HUZ57_RS23625 (58505) | 58505..58891 | + | 387 | WP_000214096.1 | type-F conjugative transfer system protein TrbI | - |
| HUZ57_RS23630 (58888) | 58888..59520 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| HUZ57_RS23635 (59517) | 59517..60509 | + | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| HUZ57_RS23640 (60535) | 60535..60996 | + | 462 | WP_000277845.1 | hypothetical protein | - |
| HUZ57_RS23645 (61026) | 61026..61478 | + | 453 | WP_000069427.1 | hypothetical protein | - |
| HUZ57_RS23650 (61506) | 61506..62144 | + | 639 | WP_001104248.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HUZ57_RS23655 (62141) | 62141..63949 | + | 1809 | WP_063078212.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HUZ57_RS23660 (63976) | 63976..64236 | + | 261 | WP_000864323.1 | conjugal transfer protein TrbE | - |
| HUZ57_RS23665 (64229) | 64229..64972 | + | 744 | WP_001030376.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HUZ57_RS23670 (64988) | 64988..65335 | + | 348 | WP_001287893.1 | conjugal transfer protein TrbA | - |
| HUZ57_RS23675 (65454) | 65454..65738 | + | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HUZ57_RS23680 (65725) | 65725..66270 | + | 546 | WP_000059818.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HUZ57_RS23685 (66260) | 66260..66574 | + | 315 | WP_001384255.1 | P-type conjugative transfer protein TrbJ | - |
| HUZ57_RS23690 (66528) | 66528..66920 | + | 393 | WP_062873756.1 | F-type conjugal transfer protein TrbF | - |
| HUZ57_RS23695 (66907) | 66907..68280 | + | 1374 | WP_156841533.1 | conjugal transfer pilus assembly protein TraH | - |
| HUZ57_RS23700 (68277) | 68277..71099 | + | 2823 | WP_062873754.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| HUZ57_RS23705 (71114) | 71114..71617 | + | 504 | WP_000605510.1 | hypothetical protein | - |
| HUZ57_RS23710 (71649) | 71649..72380 | + | 732 | WP_000850424.1 | conjugal transfer complement resistance protein TraT | - |
| HUZ57_RS23715 (72583) | 72583..73320 | + | 738 | WP_000199900.1 | hypothetical protein | - |
| HUZ57_RS23720 (73371) | 73371..75623 | + | 2253 | WP_199266148.1 | type IV conjugative transfer system coupling protein TraD | - |
| HUZ57_RS23725 (75623) | 75623..80893 | + | 5271 | WP_239612378.1 | Multifunctional conjugation protein TraI | Relaxase |
| HUZ57_RS23730 (80913) | 80913..81659 | + | 747 | WP_000205711.1 | conjugal transfer pilus acetylase TraX | - |
| HUZ57_RS23735 (81718) | 81718..82578 | + | 861 | WP_042634322.1 | putative protein YcjY | VF |
| HUZ57_RS23740 (82681) | 82681..83241 | + | 561 | WP_000840464.1 | fertility inhibition protein FinO | - |
| HUZ57_RS23745 (83372) | 83372..83581 | + | 210 | WP_001297500.1 | hypothetical protein | - |
| HUZ57_RS23750 (83993) | 83993..84619 | + | 627 | WP_000794191.1 | NYN domain-containing protein | - |
| HUZ57_RS23755 (84771) | 84771..85361 | + | 591 | WP_001375082.1 | DUF2726 domain-containing protein | - |
| HUZ57_RS23760 (85601) | 85601..85849 | + | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| HUZ57_RS23765 (85964) | 85964..86148 | + | 185 | Protein_102 | plasmid copy control protein CopA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|