MGE detailed information
MGE type: Prophage MGE length: 85212 bp
Accession: NZ_CP054992 Location: 663398..748609 Organism: Shigella flexneri strain STIN_87 Replicon: chromosome
Accession: NZ_CP054992 Location: 663398..748609 Organism: Shigella flexneri strain STIN_87 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ57_RS03195 (658546) | 658546..661638 | - | 3093 | WP_039268469.1 | beta-galactosidase subunit alpha | - |
| HUZ57_RS03200 (661822) | 661822..662805 | - | 984 | WP_000212475.1 | transcriptional regulator EbgR | - |
| HUZ57_RS03205 (663024) | 663024..663356 | + | 333 | WP_000450594.1 | tRNA-binding protein | - |
| HUZ57_RS03210 (663398) | 663398..664777 | - | 1380 | WP_001375279.1 | hypothetical protein | VF |
| HUZ57_RS03215 (665195) | 665195..666715 | + | 1521 | WP_000094721.1 | hypothetical protein | VF |
| HUZ57_RS03220 (666869) | 666869..667492 | - | 624 | WP_000018003.1 | DNA-binding transcriptional regulator NfeR | - |
| HUZ57_RS03225 (667780) | 667780..668544 | + | 765 | WP_001066494.1 | NADPH-dependent ferric chelate reductase NfeF | - |
| HUZ57_RS03230 (668841) | 668841..670157 | + | 1317 | WP_053266185.1 | hypothetical protein ; Integrase | Integrase |
| HUZ57_RS03235 (670287) | 670287..670883 | + | 597 | WP_053266184.1 | hypothetical protein | - |
| HUZ57_RS03240 (670970) | 670970..672601 | - | 1632 | WP_181664852.1 | hypothetical protein | - |
| HUZ57_RS03245 (673293) | 673293..673520 | + | 228 | WP_112868923.1 | AlpA family phage regulatory protein | - |
| HUZ57_RS03250 (673626) | 673626..673850 | + | 225 | Protein_637 | DUF3987 domain-containing protein | - |
| HUZ57_RS03255 (674102) | 674102..675535 | + | 1434 | WP_001586056.1 | YfjI family protein | - |
| HUZ57_RS03265 (677743) | 677743..678306 | + | 564 | WP_047611248.1 | inovirus-type Gp2 protein | - |
| HUZ57_RS03270 (678413) | 678413..678752 | + | 340 | Protein_641 | DEAD/DEAH box helicase | - |
| HUZ57_RS03280 (679916) | 679916..681523 | - | 1608 | WP_105290943.1 | type I restriction-modification system subunit M | - |
| HUZ57_RS03285 (681520) | 681520..682623 | - | 1104 | WP_000802278.1 | AAA family ATPase | - |
| HUZ57_RS03290 (682620) | 682620..683891 | - | 1272 | WP_000016895.1 | restriction endonuclease subunit S | - |
| HUZ57_RS03295 (684073) | 684073..687045 | - | 2973 | WP_000108144.1 | type I restriction endonuclease subunit R | - |
| HUZ57_RS03300 (687136) | 687136..687354 | - | 219 | WP_071782203.1 | hypothetical protein | - |
| HUZ57_RS03305 (688156) | 688156..688338 | - | 183 | WP_000282123.1 | hypothetical protein | - |
| HUZ57_RS03310 (688669) | 688669..689541 | + | 873 | WP_112868925.1 | GTPase family protein | - |
| HUZ57_RS03315 (689913) | 689913..692762 | + | 2850 | WP_225155183.1 | calcium-binding autotransporter Cah | - |
| HUZ57_RS03320 (692833) | 692833..693066 | + | 234 | WP_123059057.1 | DUF905 family protein | - |
| HUZ57_RS03325 (693157) | 693157..693975 | + | 819 | WP_112868927.1 | DUF932 domain-containing protein | - |
| HUZ57_RS03330 (694067) | 694067..694552 | + | 486 | WP_112868928.1 | antirestriction protein | - |
| HUZ57_RS03335 (694568) | 694568..695044 | + | 477 | WP_143364304.1 | RadC family protein | - |
| HUZ57_RS03340 (695113) | 695113..695334 | + | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| HUZ57_RS03345 (695409) | 695409..695777 | + | 369 | WP_112868929.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| HUZ57_RS03350 (695866) | 695866..696243 | + | 378 | WP_000854819.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | Toxin Detail |
| HUZ57_RS03355 (696240) | 696240..696728 | + | 489 | WP_032215286.1 | DUF5983 family protein | - |
| HUZ57_RS03360 (696748) | 696748..696945 | + | 198 | WP_000772024.1 | DUF957 domain-containing protein | - |
| HUZ57_RS03365 (697042) | 697042..697887 | + | 846 | WP_089653271.1 | DUF4942 domain-containing protein | - |
| HUZ57_RS03375 (698187) | 698187..698693 | + | 507 | WP_000228937.1 | G/U mismatch-specific DNA glycosylase | - |
| HUZ57_RS03380 (698772) | 698772..700613 | - | 1842 | WP_000437375.1 | RNA polymerase sigma factor RpoD | - |
| HUZ57_RS03385 (700808) | 700808..702553 | - | 1746 | WP_000918827.1 | DNA primase | - |
| HUZ57_RS03390 (702664) | 702664..702879 | - | 216 | WP_001144069.1 | 30S ribosomal protein S21 | - |
| HUZ57_RS03395 (703117) | 703117..704130 | + | 1014 | WP_001264352.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| HUZ57_RS03400 (704173) | 704173..705636 | - | 1464 | WP_000804973.1 | L-tartrate/succinate antiporter | - |
| HUZ57_RS03405 (705684) | 705684..706289 | - | 606 | WP_000722957.1 | L(+)-tartrate dehydratase subunit beta | - |
| HUZ57_RS03410 (706286) | 706286..707197 | - | 912 | WP_000986797.1 | L(+)-tartrate dehydratase subunit alpha | - |
| HUZ57_RS03415 (707404) | 707404..708336 | + | 933 | WP_000935206.1 | DNA-binding transcriptional activator TtdR | - |
| HUZ57_RS03420 (708349) | 708349..708966 | - | 618 | WP_001272796.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| HUZ57_RS03425 (709071) | 709071..709439 | + | 369 | WP_001295541.1 | bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | - |
| HUZ57_RS03430 (709529) | 709529..710350 | + | 822 | WP_001281927.1 | undecaprenyl-diphosphate phosphatase | - |
| HUZ57_RS03435 (710531) | 710531..711769 | - | 1239 | WP_000708487.1 | fused tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca | - |
| HUZ57_RS03440 (711833) | 711833..712453 | - | 621 | WP_001125331.1 | TIGR04211 family SH3 domain-containing protein | - |
| HUZ57_RS03445 (712695) | 712695..713996 | + | 1302 | WP_000046281.1 | inorganic triphosphatase | - |
| HUZ57_RS03450 (714019) | 714019..716859 | + | 2841 | WP_001301081.1 | bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase | - |
| HUZ57_RS03455 (716907) | 716907..718340 | + | 1434 | WP_000869178.1 | hypothetical protein | VF |
| HUZ57_RS03460 (718460) | 718460..718519 | - | 60 | WP_010723221.1 | type I toxin-antitoxin system toxin IbsE | - |
| - (718420) | 718420..718561 | + | 142 | NuclAT_1 | - | - |
| - (718420) | 718420..718561 | + | 142 | NuclAT_1 | - | - |
| - (718420) | 718420..718561 | + | 142 | NuclAT_1 | - | - |
| - (718420) | 718420..718561 | + | 142 | NuclAT_1 | - | - |
| - (718420) | 718420..718561 | + | 142 | NuclAT_3 | - | - |
| - (718420) | 718420..718561 | + | 142 | NuclAT_3 | - | - |
| - (718420) | 718420..718561 | + | 142 | NuclAT_3 | - | - |
| - (718420) | 718420..718561 | + | 142 | NuclAT_3 | - | - |
| HUZ57_RS03465 (718835) | 718835..718894 | - | 60 | WP_001387081.1 | type I toxin-antitoxin system Ibs family toxin | - |
| - (718795) | 718795..718937 | + | 143 | NuclAT_0 | - | - |
| - (718795) | 718795..718937 | + | 143 | NuclAT_0 | - | - |
| - (718795) | 718795..718937 | + | 143 | NuclAT_0 | - | - |
| - (718795) | 718795..718937 | + | 143 | NuclAT_0 | - | - |
| - (718795) | 718795..718937 | + | 143 | NuclAT_4 | - | - |
| - (718795) | 718795..718937 | + | 143 | NuclAT_4 | - | - |
| - (718795) | 718795..718937 | + | 143 | NuclAT_4 | - | - |
| - (718795) | 718795..718937 | + | 143 | NuclAT_4 | - | - |
| HUZ57_RS03470 (719135) | 719135..720796 | - | 1662 | WP_001311137.1 | flotillin family protein | - |
| HUZ57_RS03475 (720823) | 720823..721452 | - | 630 | WP_000599926.1 | DUF1449 family protein | - |
| HUZ57_RS03480 (721721) | 721721..721921 | + | 201 | WP_000350095.1 | cell surface composition regulator GlgS | - |
| HUZ57_RS03485 (721964) | 721964..723028 | - | 1065 | WP_001269802.1 | fimbrial protein | - |
| HUZ57_RS03490 (723030) | 723030..723779 | - | 750 | WP_001269824.1 | hypothetical protein | VF |
| HUZ57_RS03495 (723795) | 723795..726299 | - | 2505 | WP_000277103.1 | hypothetical protein | VF |
| HUZ57_RS03500 (726359) | 726359..726910 | - | 552 | WP_001272145.1 | hypothetical protein | VF |
| HUZ57_RS03505 (727194) | 727194..727484 | - | 291 | WP_001295626.1 | ubiquinone biosynthesis accessory factor UbiK | - |
| HUZ57_RS03510 (727858) | 727858..728511 | + | 654 | WP_001076997.1 | 3,4-dihydroxy-2-butanone-4-phosphate synthase | - |
| HUZ57_RS03515 (728773) | 728773..728943 | + | 171 | WP_000469266.1 | protein YqiD | - |
| HUZ57_RS03520 (729001) | 729001..729774 | - | 774 | WP_001295627.1 | zinc transporter ZupT | - |
| HUZ57_RS03525 (729917) | 729917..730705 | + | 789 | WP_001320780.1 | 4,5-DOPA dioxygenase extradiol | - |
| HUZ57_RS03530 (730743) | 730743..731903 | - | 1161 | WP_000442860.1 | glutathionylspermidine synthase family protein | - |
| HUZ57_RS03535 (731909) | 731909..732580 | - | 672 | WP_000831543.1 | DUF1190 family protein | - |
| HUZ57_RS03540 (732728) | 732728..734209 | - | 1482 | WP_000735278.1 | outer membrane channel protein TolC | - |
| HUZ57_RS03545 (734414) | 734414..735043 | + | 630 | WP_000917117.1 | ADP-ribose diphosphatase | - |
| HUZ57_RS03550 (735044) | 735044..735466 | + | 423 | WP_000833393.1 | DUF1249 family protein | - |
| HUZ57_RS03555 (735491) | 735491..736318 | + | 828 | WP_000444747.1 | 3',5'-cyclic-AMP phosphodiesterase | - |
| HUZ57_RS03560 (736318) | 736318..736899 | + | 582 | WP_000105733.1 | esterase YqiA | - |
| HUZ57_RS03565 (736928) | 736928..738820 | + | 1893 | WP_001586263.1 | DNA topoisomerase IV subunit B | - |
| HUZ57_RS03570 (738868) | 738868..739182 | - | 315 | WP_000958598.1 | putative quinol monooxygenase | - |
| HUZ57_RS03575 (739213) | 739213..739794 | - | 582 | WP_000065430.1 | NADPH:quinone oxidoreductase MdaB | - |
| HUZ57_RS03580 (740113) | 740113..740445 | + | 333 | WP_000917685.1 | DUF2645 family protein | - |
| HUZ57_RS03585 (740491) | 740491..741840 | - | 1350 | WP_000673402.1 | quorum sensing histidine kinase QseC | - |
| HUZ57_RS03590 (741837) | 741837..742496 | - | 660 | WP_001221493.1 | hypothetical protein | VF |
| HUZ57_RS03595 (742648) | 742648..743040 | + | 393 | WP_000712658.1 | OB fold stress tolerance protein YgiW | - |
| HUZ57_RS03600 (743093) | 743093..743575 | + | 483 | WP_000183505.1 | GyrI-like domain-containing protein | - |
| HUZ57_RS03605 (743780) | 743780..744076 | + | 297 | WP_000415584.1 | type II toxin-antitoxin system toxin MqsR | Toxin Detail |
| HUZ57_RS03610 (744078) | 744078..744473 | + | 396 | WP_000650107.1 | type II toxin-antitoxin system antitoxin MqsA | Antitoxin Detail |
| HUZ57_RS03615 (744606) | 744606..746213 | + | 1608 | WP_001295629.1 | ABC transporter substrate-binding protein | - |
| HUZ57_RS03620 (746351) | 746351..748609 | + | 2259 | WP_001281841.1 | DNA topoisomerase IV subunit A | - |
| HUZ57_RS03625 (748843) | 748843..749580 | + | 738 | WP_000965722.1 | 1-acylglycerol-3-phosphate O-acyltransferase | - |
| HUZ57_RS03630 (749655) | 749655..751067 | + | 1413 | WP_000059388.1 | cell division protein FtsP | - |
| HUZ57_RS03635 (751178) | 751178..753397 | + | 2220 | WP_000095187.1 | YgiQ family radical SAM protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|