MGE detailed information
MGE type: Prophage MGE length: 97120 bp
Accession: NZ_CP054992 Location: 3640968..3738087 Organism: Shigella flexneri strain STIN_87 Replicon: chromosome
Accession: NZ_CP054992 Location: 3640968..3738087 Organism: Shigella flexneri strain STIN_87 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ57_RS17660 (3636827) | 3636827..3637783 | + | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| HUZ57_RS17665 (3637834) | 3637834..3638172 | + | 339 | Protein_3473 | LysR substrate-binding domain-containing protein | - |
| HUZ57_RS17670 (3638514) | 3638514..3638873 | + | 360 | WP_001350215.1 | hypothetical protein | - |
| HUZ57_RS17675 (3638866) | 3638866..3639408 | - | 543 | WP_000284450.1 | plasmid pRiA4b ORF-3 family protein | - |
| HUZ57_RS17680 (3639529) | 3639529..3639714 | - | 186 | WP_000188903.1 | hypothetical protein | - |
| HUZ57_RS17685 (3640012) | 3640012..3640293 | - | 282 | WP_000617443.1 | PerC family transcriptional regulator | - |
| HUZ57_RS17690 (3640525) | 3640525..3640716 | - | 192 | WP_000188906.1 | hypothetical protein | - |
| HUZ57_RS17695 (3640995) | 3640995..3641153 | + | 159 | WP_049066248.1 | AlpA family phage regulatory protein | - |
| HUZ57_RS17700 (3642148) | 3642148..3642537 | + | 390 | WP_000560496.1 | hypothetical protein | - |
| HUZ57_RS17705 (3642556) | 3642556..3644661 | - | 2106 | WP_001585370.1 | hypothetical protein | - |
| HUZ57_RS17710 (3644661) | 3644661..3646082 | - | 1422 | WP_001585369.1 | phage DNA ejection protein | - |
| HUZ57_RS17715 (3646082) | 3646082..3646759 | - | 678 | WP_000909175.1 | hypothetical protein | - |
| HUZ57_RS17720 (3646753) | 3646753..3647214 | - | 462 | WP_000420674.1 | DUF2824 family protein | - |
| HUZ57_RS17725 (3647231) | 3647231..3647392 | - | 162 | WP_001018524.1 | hypothetical protein | - |
| HUZ57_RS17730 (3647977) | 3647977..3650733 | - | 2757 | WP_001585368.1 | TOPRIM and DUF927 domain-containing protein | - |
| HUZ57_RS17735 (3650720) | 3650720..3651091 | - | 372 | WP_001580247.1 | hypothetical protein | - |
| HUZ57_RS17740 (3651084) | 3651084..3651425 | - | 342 | WP_000628967.1 | hypothetical protein | - |
| HUZ57_RS17745 (3651436) | 3651436..3652038 | - | 603 | WP_001058748.1 | hypothetical protein | - |
| HUZ57_RS17750 (3652031) | 3652031..3652252 | - | 222 | WP_000181940.1 | hypothetical protein | - |
| HUZ57_RS17755 (3652249) | 3652249..3652512 | - | 264 | WP_001024675.1 | hypothetical protein | - |
| HUZ57_RS17760 (3652509) | 3652509..3652703 | - | 195 | WP_001065741.1 | hypothetical protein | - |
| HUZ57_RS17765 (3652907) | 3652907..3653101 | - | 195 | WP_001377265.1 | host cell division inhibitor Icd-like protein | - |
| HUZ57_RS17770 (3653128) | 3653128..3653343 | - | 216 | Protein_3494 | ash family protein | - |
| HUZ57_RS17775 (3653757) | 3653757..3653939 | - | 183 | WP_000476150.1 | DUF4222 domain-containing protein | - |
| HUZ57_RS17780 (3653932) | 3653932..3654765 | - | 834 | WP_001019376.1 | antA/AntB antirepressor family protein | - |
| HUZ57_RS17785 (3654778) | 3654778..3655209 | - | 432 | WP_001035842.1 | hypothetical protein | - |
| HUZ57_RS17790 (3655209) | 3655209..3655406 | - | 198 | WP_000083330.1 | AlpA family transcriptional regulator | - |
| HUZ57_RS17795 (3655604) | 3655604..3656485 | - | 882 | WP_000251023.1 | DUF6387 family protein | - |
| HUZ57_RS17800 (3656628) | 3656628..3657842 | - | 1215 | WP_000772642.1 | hypothetical protein ; Integrase | Integrase |
| HUZ57_RS17805 (3658483) | 3658483..3659325 | + | 843 | WP_039023233.1 | hypothetical protein | - |
| HUZ57_RS17810 (3659487) | 3659487..3661100 | - | 1614 | WP_000080200.1 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS17815 (3661131) | 3661131..3661481 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS17820 (3661478) | 3661478..3661903 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| HUZ57_RS17825 (3662366) | 3662366..3662548 | - | 183 | WP_223675196.1 | hypothetical protein | - |
| HUZ57_RS17830 (3662743) | 3662743..3663117 | + | 375 | Protein_3506 | recombinase | - |
| HUZ57_RS17835 (3663259) | 3663259..3663840 | - | 582 | WP_000371964.1 | SLATT domain-containing protein | - |
| HUZ57_RS17840 (3663818) | 3663818..3664699 | - | 882 | WP_039023230.1 | nucleotidyltransferase | - |
| HUZ57_RS17845 (3665377) | 3665377..3665523 | - | 147 | Protein_3509 | tail fiber assembly protein | - |
| HUZ57_RS17850 (3665560) | 3665560..3669318 | - | 3759 | WP_086708942.1 | prophage tail fiber N-terminal domain-containing protein | - |
| HUZ57_RS17855 (3669383) | 3669383..3669982 | - | 600 | WP_001230375.1 | hypothetical protein | VF |
| HUZ57_RS17860 (3670052) | 3670052..3673549 | - | 3498 | WP_239612357.1 | host specificity protein J | - |
| HUZ57_RS17865 (3673610) | 3673610..3674218 | - | 609 | WP_000090945.1 | tail assembly protein | - |
| HUZ57_RS17870 (3674155) | 3674155..3674898 | - | 744 | WP_032147298.1 | C40 family peptidase | - |
| HUZ57_RS17875 (3674904) | 3674904..3675602 | - | 699 | WP_001537716.1 | phage minor tail protein L | - |
| HUZ57_RS17880 (3675612) | 3675612..3675941 | - | 330 | WP_000447253.1 | phage tail protein | - |
| HUZ57_RS17885 (3675941) | 3675941..3678997 | - | 3057 | WP_061357299.1 | phage tail tape measure protein | - |
| HUZ57_RS17890 (3678969) | 3678969..3679298 | - | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| HUZ57_RS17895 (3679307) | 3679307..3679693 | - | 387 | WP_001299384.1 | phage minor tail protein G | - |
| HUZ57_RS17900 (3679754) | 3679754..3680497 | - | 744 | WP_000211109.1 | phage tail protein | - |
| HUZ57_RS17905 (3680509) | 3680509..3680910 | - | 402 | WP_001079398.1 | phage minor tail U family protein | - |
| HUZ57_RS17910 (3680907) | 3680907..3681485 | - | 579 | WP_000677106.1 | phage tail protein | - |
| HUZ57_RS17915 (3681497) | 3681497..3681772 | - | 276 | WP_001283147.1 | DNA breaking-rejoining protein | - |
| HUZ57_RS17920 (3681765) | 3681765..3682088 | - | 324 | WP_001097046.1 | DUF2190 family protein | - |
| HUZ57_RS17925 (3682175) | 3682175..3684202 | - | 2028 | WP_001136591.1 | hypothetical protein | VF |
| HUZ57_RS17930 (3684147) | 3684147..3685727 | - | 1581 | WP_239612358.1 | phage portal protein | - |
| HUZ57_RS17935 (3685655) | 3685655..3685867 | - | 213 | WP_001072975.1 | hypothetical protein | - |
| HUZ57_RS17940 (3685864) | 3685864..3687966 | - | 2103 | WP_239612359.1 | phage terminase large subunit family protein | - |
| HUZ57_RS17945 (3687966) | 3687966..3688460 | - | 495 | WP_000373425.1 | DUF1441 family protein | - |
| HUZ57_RS17950 (3689136) | 3689136..3689288 | - | 153 | WP_021512737.1 | hypothetical protein | - |
| HUZ57_RS17955 (3689276) | 3689276..3689743 | - | 468 | WP_001341210.1 | lysis system i-spanin subunit Rz | - |
| HUZ57_RS17960 (3689740) | 3689740..3690237 | - | 498 | WP_001135250.1 | lysozyme RrrD | - |
| HUZ57_RS17965 (3690237) | 3690237..3690452 | - | 216 | WP_000839596.1 | phage lysis protein EssD | - |
| HUZ57_RS17970 (3690520) | 3690520..3691572 | - | 1053 | WP_000799656.1 | site-specific DNA-methyltransferase | - |
| HUZ57_RS17975 (3691723) | 3691723..3692010 | - | 288 | WP_223675311.1 | hypothetical protein | - |
| HUZ57_RS17980 (3692195) | 3692195..3693136 | + | 942 | WP_001446998.1 | hypothetical protein | - |
| HUZ57_RS17985 (3693158) | 3693158..3693607 | + | 450 | WP_001208502.1 | hypothetical protein | - |
| HUZ57_RS17990 (3693643) | 3693643..3694011 | - | 369 | WP_085949407.1 | antiterminator Q family protein | - |
| HUZ57_RS17995 (3694026) | 3694026..3695015 | - | 990 | WP_039023166.1 | DUF968 domain-containing protein | - |
| HUZ57_RS18000 (3695023) | 3695023..3695832 | - | 810 | WP_024227971.1 | KilA-N domain-containing protein | - |
| HUZ57_RS18005 (3695852) | 3695852..3696241 | - | 390 | WP_000767113.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HUZ57_RS18010 (3696238) | 3696238..3696564 | - | 327 | WP_000210170.1 | LexA family transcriptional regulator | - |
| HUZ57_RS18015 (3696561) | 3696561..3697214 | - | 654 | WP_239612360.1 | phage N-6-adenine-methyltransferase | - |
| HUZ57_RS18020 (3697214) | 3697214..3697708 | - | 495 | WP_001332382.1 | PerC family transcriptional regulator | - |
| HUZ57_RS18025 (3697705) | 3697705..3698646 | - | 942 | WP_032361253.1 | helix-turn-helix domain-containing protein | - |
| HUZ57_RS18030 (3698636) | 3698636..3698815 | - | 180 | WP_001188051.1 | DUF4222 domain-containing protein | - |
| HUZ57_RS18035 (3698991) | 3698991..3699575 | - | 585 | WP_000514170.1 | YmfL family putative regulatory protein | - |
| HUZ57_RS18040 (3699604) | 3699604..3699867 | - | 264 | WP_000098316.1 | YdaS family helix-turn-helix protein | - |
| HUZ57_RS18045 (3699974) | 3699974..3700678 | + | 705 | WP_001410974.1 | S24 family peptidase | - |
| HUZ57_RS18050 (3700913) | 3700913..3701998 | + | 1086 | WP_021514790.1 | ParA family protein | - |
| HUZ57_RS18055 (3702931) | 3702931..3703293 | + | 363 | WP_000135680.1 | protein YfdP | - |
| HUZ57_RS18060 (3703359) | 3703359..3704183 | + | 825 | WP_000081287.1 | DUF2303 family protein | - |
| HUZ57_RS18065 (3704311) | 3704311..3704847 | + | 537 | WP_000008200.1 | 5'-deoxynucleotidase | - |
| HUZ57_RS18070 (3704838) | 3704838..3705200 | + | 363 | WP_001242749.1 | phage protein | - |
| HUZ57_RS18075 (3705200) | 3705200..3705505 | + | 306 | WP_000206737.1 | hypothetical protein | - |
| HUZ57_RS18080 (3705421) | 3705421..3705855 | + | 435 | WP_077873866.1 | helix-turn-helix domain-containing protein | - |
| HUZ57_RS18085 (3705777) | 3705777..3706895 | + | 1119 | WP_224676359.1 | hypothetical protein ; Integrase | Integrase |
| HUZ57_RS18095 (3707100) | 3707100..3708353 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| HUZ57_RS18100 (3708365) | 3708365..3709468 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| HUZ57_RS18105 (3709756) | 3709756..3710811 | + | 1056 | WP_000749867.1 | phosphoporin PhoE | - |
| HUZ57_RS18110 (3710850) | 3710850..3711251 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| - (3711969) | 3711969..3712049 | - | 81 | NuclAT_11 | - | - |
| - (3711969) | 3711969..3712049 | - | 81 | NuclAT_11 | - | - |
| - (3711969) | 3711969..3712049 | - | 81 | NuclAT_11 | - | - |
| - (3711969) | 3711969..3712049 | - | 81 | NuclAT_11 | - | - |
| HUZ57_RS18115 (3711309) | 3711309..3712553 | - | 1245 | WP_000189532.1 | esterase FrsA | - |
| HUZ57_RS18120 (3712645) | 3712645..3713103 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| HUZ57_RS18125 (3713364) | 3713364..3714821 | + | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| HUZ57_RS18130 (3714878) | 3714878..3715399 | - | 522 | Protein_3565 | peptide chain release factor H | - |
| HUZ57_RS18135 (3715395) | 3715395..3715601 | - | 207 | Protein_3566 | RtcB family protein | - |
| HUZ57_RS18140 (3715919) | 3715919..3716371 | - | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| HUZ57_RS18145 (3716381) | 3716381..3716779 | - | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| HUZ57_RS18150 (3716782) | 3716782..3717075 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| HUZ57_RS18155 (3717127) | 3717127..3718182 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| HUZ57_RS18160 (3718253) | 3718253..3719038 | - | 786 | WP_000207552.1 | hypothetical protein | VF |
| HUZ57_RS18165 (3719010) | 3719010..3720722 | + | 1713 | Protein_3572 | hypothetical protein | VF |
| HUZ57_RS18170 (3720946) | 3720946..3721443 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| HUZ57_RS18175 (3721619) | 3721619..3722368 | - | 750 | WP_000056849.1 | hypothetical protein | VF |
| HUZ57_RS18180 (3722578) | 3722578..3722838 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| HUZ57_RS18185 (3722841) | 3722841..3723119 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| HUZ57_RS18190 (3723275) | 3723275..3724015 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| HUZ57_RS18195 (3723986) | 3723986..3724753 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| HUZ57_RS18200 (3724959) | 3724959..3725537 | - | 579 | WP_000284050.1 | hypothetical protein | VF |
| HUZ57_RS18205 (3725777) | 3725777..3728221 | + | 2445 | WP_000973083.1 | hypothetical protein | VF |
| HUZ57_RS18210 (3728264) | 3728264..3728710 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| HUZ57_RS18215 (3728891) | 3728891..3729661 | + | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| HUZ57_RS18220 (3729702) | 3729702..3730838 | - | 1137 | WP_000420818.1 | ISAs1 family transposase ISEc1 | Transposase |
| HUZ57_RS18225 (3731269) | 3731269..3731445 | - | 177 | WP_173669931.1 | hypothetical protein | - |
| HUZ57_RS18230 (3731442) | 3731442..3731660 | - | 219 | WP_001101841.1 | hypothetical protein | - |
| HUZ57_RS18235 (3731638) | 3731638..3735870 | - | 4233 | WP_000508724.1 | hypothetical protein | VF |
| HUZ57_RS18240 (3735946) | 3735946..3738087 | - | 2142 | WP_000103354.1 | hypothetical protein | VF |
| HUZ57_RS18245 (3738297) | 3738297..3738815 | - | 519 | WP_001142958.1 | Hcp family type VI secretion system effector | - |
| HUZ57_RS18250 (3739510) | 3739510..3740010 | + | 501 | WP_000037397.1 | type VI secretion system contractile sheath small subunit | - |
| HUZ57_RS18255 (3740045) | 3740045..3740269 | + | 225 | WP_000123970.1 | hypothetical protein | - |
| HUZ57_RS18260 (3740320) | 3740320..3741795 | + | 1476 | WP_000056989.1 | type VI secretion system contractile sheath large subunit | - |
| HUZ57_RS18265 (3741802) | 3741802..3742215 | + | 414 | WP_000611744.1 | type VI secretion system baseplate subunit TssE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|