MGE detailed information
MGE type: Conjugative plasmid MGE length: 126498 bp
Accession: NZ_CP054364 Location: 1..126498 Organism: Escherichia coli strain SCU-171 Replicon: plasmid pSCU-171-1
Accession: NZ_CP054364 Location: 1..126498 Organism: Escherichia coli strain SCU-171 Replicon: plasmid pSCU-171-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPE49_RS25510 () | 1..978 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| HPE49_RS25515 () | 1263..2003 | - | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| HPE49_RS25520 () | 2124..2312 | - | 189 | WP_049035582.1 | hypothetical protein | - |
| HPE49_RS25525 () | 2674..3843 | + | 1170 | WP_089636615.1 | hypothetical protein | - |
| HPE49_RS25530 () | 4124..4411 | - | 288 | Protein_4 | DDE-type integrase/transposase/recombinase | - |
| HPE49_RS25535 () | 4428..5088 | - | 661 | Protein_5 | transposase | - |
| HPE49_RS25540 () | 5433..5705 | - | 273 | WP_089636614.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HPE49_RS25545 () | 7165..9135 | + | 1971 | WP_021552488.1 | Hemin receptor | VF |
| HPE49_RS25555 () | 10574..11296 | + | 723 | Protein_9 | DUF4198 domain-containing protein | - |
| HPE49_RS25560 () | 11455..12024 | - | 570 | WP_174144613.1 | hypothetical protein | - |
| HPE49_RS25565 () | 12318..14186 | - | 1869 | WP_174144615.1 | Lipase | VF |
| HPE49_RS25570 () | 15760..16221 | - | 462 | Protein_12 | hypothetical protein | - |
| HPE49_RS25575 () | 16496..17743 | - | 1248 | WP_001620879.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
| HPE49_RS25580 () | 17803..19950 | - | 2148 | WP_001620877.1 | Toxin RTX-I translocation ATP-binding protein | VF |
| HPE49_RS25585 () | 19947..21215 | - | 1269 | WP_032150216.1 | TolC family protein | - |
| HPE49_RS25590 () | 21273..21575 | - | 303 | WP_001774321.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HPE49_RS25595 () | 22116..23264 | + | 1149 | Protein_17 | IS3 family transposase | - |
| HPE49_RS25600 () | 23300..23479 | - | 180 | WP_001620859.1 | hypothetical protein | - |
| HPE49_RS25605 () | 24089..25204 | + | 1116 | WP_001620858.1 | Elloramycin glycosyltransferase ElmGT | VF |
| HPE49_RS25610 () | 25344..29003 | + | 3660 | WP_089636612.1 | Multidrug efflux ATP-binding/permease protein | VF |
| HPE49_RS25615 () | 29107..30336 | + | 1230 | WP_083574998.1 | Enterochelin esterase | VF |
| HPE49_RS25620 () | 30421..31377 | + | 957 | WP_001620854.1 | Ferri-bacillibactin esterase BesA | VF |
| HPE49_RS25625 () | 31422..33599 | - | 2178 | WP_089636611.1 | Ferrienterobactin receptor | VF |
| HPE49_RS25630 () | 34464..35498 | - | 1035 | WP_089636610.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| HPE49_RS25635 () | 35993..36301 | - | 309 | WP_089636608.1 | hypothetical protein | - |
| HPE49_RS25640 () | 36400..36582 | - | 183 | WP_089636607.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HPE49_RS25645 () | 36579..36848 | - | 270 | WP_089636606.1 | hypothetical protein | Antitoxin Detail |
| HPE49_RS25650 () | 37459..38733 | + | 1275 | WP_000489607.1 | HlyD family secretion protein | - |
| HPE49_RS25655 () | 38708..40822 | + | 2115 | WP_122988972.1 | peptidase domain-containing ABC transporter | - |
| HPE49_RS25660 () | 40992..41303 | - | 312 | WP_001259758.1 | colicin V | - |
| HPE49_RS25665 () | 41281..41517 | - | 237 | WP_001323890.1 | colicin V immunity protein | - |
| HPE49_RS25670 () | 41967..42248 | - | 282 | WP_174144617.1 | hypothetical protein | - |
| HPE49_RS25675 () | 42354..42416 | - | 63 | Protein_33 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HPE49_RS25680 () | 42421..42588 | + | 168 | Protein_34 | colicin-B | - |
| HPE49_RS25685 () | 42606..43133 | - | 528 | WP_021561684.1 | colicin B immunity protein | - |
| HPE49_RS25690 () | 43377..44192 | + | 816 | WP_089636711.1 | lipid II-degrading bacteriocin colicin M | - |
| HPE49_RS25695 () | 44242..44595 | - | 354 | WP_106371934.1 | colicin M immunity protein | - |
| HPE49_RS25700 () | 44542..44667 | - | 126 | Protein_38 | colicin immunity protein | - |
| HPE49_RS25705 () | 44768..45550 | - | 783 | WP_174144647.1 | site-specific integrase | - |
| HPE49_RS25710 () | 46197..47435 | + | 1239 | WP_089636701.1 | 3-oxo-glucose-6-phosphate:glutamate aminotransferase | VF |
| HPE49_RS25715 () | 47419..48249 | + | 831 | WP_089636702.1 | HAD-IIB family hydrolase | - |
| HPE49_RS25720 () | 48249..49265 | + | 1017 | WP_089636703.1 | Gfo/Idh/MocA family oxidoreductase | - |
| HPE49_RS25725 () | 49267..49536 | + | 270 | WP_000379710.1 | SemiSWEET transporter | - |
| HPE49_RS25730 () | 49533..51065 | + | 1533 | WP_089636704.1 | NAD(P)-binding domain-containing protein | - |
| HPE49_RS25735 () | 51097..51549 | - | 453 | WP_000670963.1 | N-acetyltransferase | - |
| HPE49_RS25740 () | 51878..52138 | + | 261 | WP_089636705.1 | hypothetical protein | - |
| HPE49_RS25745 () | 52135..52725 | + | 591 | WP_174144619.1 | hypothetical protein | - |
| HPE49_RS25750 () | 52745..53092 | - | 348 | WP_000142449.1 | hypothetical protein | - |
| HPE49_RS25755 () | 53221..53556 | + | 336 | WP_089636717.1 | colicin transporter | - |
| HPE49_RS25760 () | 53578..54431 | - | 854 | Protein_50 | hypothetical protein | - |
| HPE49_RS25765 () | 54716..54883 | + | 168 | WP_170987597.1 | hypothetical protein | - |
| HPE49_RS25770 () | 54959..56158 | - | 1200 | WP_019842812.1 | lipoprotein-releasing ABC transporter permease subunit LolC | - |
| HPE49_RS25775 () | 56286..57182 | - | 897 | WP_174144649.1 | HTH-type transcriptional regulator PgrR | VF |
| HPE49_RS25780 () | 57312..58067 | + | 756 | WP_089636710.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| HPE49_RS25785 () | 58105..59043 | + | 939 | WP_019842809.1 | alpha/beta hydrolase | - |
| HPE49_RS25790 () | 59188..59469 | - | 282 | WP_001105058.1 | hypothetical protein | - |
| HPE49_RS25795 () | 59575..59850 | - | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HPE49_RS25800 () | 59850..60134 | - | 285 | WP_089636645.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| HPE49_RS25805 () | 61052..62074 | - | 1023 | WP_000234918.1 | replication initiation protein | - |
| HPE49_RS25810 () | 62064..62597 | - | 534 | WP_089636643.1 | replication protein | - |
| HPE49_RS25815 () | 62590..62664 | - | 75 | WP_001388587.1 | RepA leader peptide Tap | - |
| HPE49_RS25820 () | 62897..63157 | - | 261 | WP_001595248.1 | replication regulatory protein RepA | - |
| HPE49_RS25825 () | 63397..63987 | - | 591 | WP_001595249.1 | DUF2726 domain-containing protein | - |
| HPE49_RS25830 () | 64025..64234 | - | 210 | WP_001333231.1 | hemolysin expression modulator Hha | - |
| HPE49_RS25835 () | 64280..64741 | - | 462 | Protein_65 | thermonuclease family protein | - |
| HPE49_RS25840 () | 64987..65199 | - | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| HPE49_RS25845 () | 65335..65895 | - | 561 | WP_001595251.1 | fertility inhibition protein FinO | - |
| HPE49_RS25850 () | 65950..66696 | - | 747 | WP_001595252.1 | conjugal transfer pilus acetylase TraX | - |
| HPE49_RS25855 () | 66716..71986 | - | 5271 | WP_174144621.1 | Multifunctional conjugation protein TraI | Relaxase |
| HPE49_RS25860 () | 71986..74175 | - | 2190 | WP_174144623.1 | type IV conjugative transfer system coupling protein TraD | - |
| HPE49_RS25865 () | 74428..75159 | - | 732 | WP_033804343.1 | complement resistance protein TraT | - |
| HPE49_RS25870 () | 75191..75688 | - | 498 | WP_032160253.1 | entry exclusion protein | - |
| HPE49_RS25875 () | 75704..78526 | - | 2823 | WP_174144625.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HPE49_RS25880 () | 78523..79896 | - | 1374 | WP_174144627.1 | conjugal transfer protein TraH | - |
| HPE49_RS25885 () | 79896..80309 | - | 414 | WP_071600849.1 | F-type conjugal transfer protein TrbF | - |
| HPE49_RS25890 () | 80263..80603 | - | 341 | Protein_76 | P-type conjugative transfer protein TrbJ | - |
| HPE49_RS25895 () | 80533..81078 | - | 546 | WP_001595260.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HPE49_RS25900 () | 81065..81346 | - | 282 | WP_001595262.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HPE49_RS25905 () | 81725..82090 | - | 366 | WP_001774302.1 | hypothetical protein | - |
| HPE49_RS25910 () | 82104..82829 | - | 726 | WP_174144651.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HPE49_RS25915 () | 82928..83578 | + | 651 | WP_032211181.1 | IS66 family transposase IS679 | Transposase |
| HPE49_RS25920 () | 83578..83925 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| HPE49_RS25925 () | 83945..85516 | + | 1572 | WP_032211182.1 | IS66 family transposase ISCro1 | Transposase |
| HPE49_RS25930 () | 85549..85806 | - | 258 | WP_001595267.1 | conjugal transfer protein TrbE | - |
| HPE49_RS25935 () | 85845..87641 | - | 1797 | WP_174144629.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HPE49_RS25940 () | 87638..88276 | - | 639 | WP_001595269.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HPE49_RS25945 () | 88285..89277 | - | 993 | WP_174144631.1 | conjugal transfer pilus assembly protein TraU | - |
| HPE49_RS25950 () | 89274..89906 | - | 633 | WP_001595271.1 | type-F conjugative transfer system protein TraW | - |
| HPE49_RS25955 () | 89903..90289 | - | 387 | WP_001595275.1 | type-F conjugative transfer system protein TrbI | - |
| HPE49_RS25960 () | 90286..92913 | - | 2628 | WP_174144633.1 | type IV secretion system protein TraC | - |
| HPE49_RS25965 () | 93073..93294 | - | 222 | WP_001278978.1 | conjugal transfer protein TraR | - |
| HPE49_RS25970 () | 93429..93944 | - | 516 | WP_174144635.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HPE49_RS25975 () | 93941..94191 | - | 251 | Protein_93 | conjugal transfer protein TrbG | - |
| HPE49_RS25980 () | 94202..94432 | - | 231 | WP_174144637.1 | conjugal transfer protein TrbD | - |
| HPE49_RS25985 () | 94386..94976 | - | 591 | WP_000002787.1 | conjugal transfer protein TraP | - |
| HPE49_RS25990 () | 94966..96393 | - | 1428 | WP_096964202.1 | conjugal transfer protein TraB | - |
| HPE49_RS25995 () | 96393..97097 | - | 705 | WP_148718190.1 | type-F conjugative transfer system secretin TraK | - |
| HPE49_RS26000 () | 97108..97674 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| HPE49_RS26005 () | 97696..98007 | - | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| HPE49_RS26010 () | 98022..98387 | - | 366 | WP_000340270.1 | type IV conjugative transfer system pilin TraA | - |
| HPE49_RS26015 () | 98421..98648 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| HPE49_RS26020 () | 98742..99428 | - | 687 | WP_000332492.1 | PAS domain-containing protein | - |
| HPE49_RS26025 () | 99618..100001 | - | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| HPE49_RS26030 () | 100335..100925 | + | 591 | WP_168926342.1 | hypothetical protein | VF |
| HPE49_RS26035 () | 101222..102043 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| HPE49_RS26040 () | 102161..102448 | - | 288 | WP_001595289.1 | hypothetical protein | - |
| HPE49_RS26045 () | 102675..102868 | - | 194 | Protein_107 | hypothetical protein | - |
| HPE49_RS26050 () | 103354..103515 | - | 162 | WP_074158549.1 | type I toxin-antitoxin system Hok family toxin | - |
| - () | 103567..103773 | - | 207 | NuclAT_0 | - | - |
| - () | 103567..103773 | - | 207 | NuclAT_0 | - | - |
| - () | 103567..103773 | - | 207 | NuclAT_0 | - | - |
| - () | 103567..103773 | - | 207 | NuclAT_0 | - | - |
| HPE49_RS26055 () | 103722..104036 | - | 315 | WP_089636635.1 | theronine dehydrogenase | - |
| HPE49_RS26060 () | 104033..104752 | - | 720 | WP_089636634.1 | plasmid SOS inhibition protein A | - |
| HPE49_RS26065 () | 104749..105183 | - | 435 | WP_174144639.1 | conjugation system SOS inhibitor PsiB | - |
| HPE49_RS26070 () | 105238..107229 | - | 1992 | WP_174144641.1 | ParB/RepB/Spo0J family partition protein | - |
| HPE49_RS26075 () | 107293..107526 | - | 234 | WP_089636631.1 | DUF905 family protein | - |
| HPE49_RS26080 () | 107584..108117 | - | 534 | WP_000290814.1 | single-stranded DNA-binding protein | - |
| HPE49_RS26085 () | 108182..108418 | + | 237 | Protein_115 | hypothetical protein | - |
| HPE49_RS26090 () | 108419..108824 | + | 406 | Protein_116 | hypothetical protein | - |
| HPE49_RS26095 () | 108921..109484 | - | 564 | WP_174144643.1 | class I SAM-dependent methyltransferase | - |
| HPE49_RS26100 () | 109533..110894 | - | 1362 | WP_089636629.1 | DUF3560 domain-containing protein | - |
| HPE49_RS26105 () | 110946..111176 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| HPE49_RS26110 () | 112215..112406 | - | 192 | WP_096979356.1 | hypothetical protein | - |
| HPE49_RS26115 () | 112403..112825 | - | 423 | WP_096979359.1 | DUF1380 family protein | - |
| HPE49_RS26120 () | 112872..113174 | - | 303 | WP_072169484.1 | antirestriction protein | - |
| HPE49_RS26125 () | 113270..113685 | - | 416 | Protein_123 | DUF1472 domain-containing protein | - |
| HPE49_RS26130 () | 113795..114766 | + | 972 | WP_174144645.1 | IS110 family transposase ISOt5 | Transposase |
| HPE49_RS26135 () | 116203..117225 | + | 1023 | Protein_125 | IS21 family transposase IS100kyp | Transposase |
| HPE49_RS26140 () | 117225..117983 | + | 759 | Protein_126 | IS21 family transposase IS100kyp | Transposase |
| HPE49_RS26145 () | 118045..118203 | - | 159 | WP_122988974.1 | DUF1281 domain-containing protein | - |
| HPE49_RS26150 () | 118597..118845 | + | 249 | Protein_128 | DinI-like family protein | - |
| HPE49_RS26155 () | 118842..119278 | + | 437 | Protein_129 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HPE49_RS26160 () | 119278..120550 | + | 1273 | Protein_130 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HPE49_RS26165 () | 120555..120947 | - | 393 | WP_001595306.1 | plasmid partitioning/stability family protein | - |
| HPE49_RS26170 () | 120952..121923 | - | 972 | WP_001103690.1 | hypothetical protein | - |
| HPE49_RS26175 () | 122152..122796 | + | 645 | WP_000633911.1 | AAA family ATPase | - |
| HPE49_RS26180 () | 122790..123065 | + | 276 | WP_000239529.1 | hypothetical protein | - |
| HPE49_RS26185 () | 123203..124012 | - | 810 | WP_001595307.1 | site-specific integrase | - |
| HPE49_RS26190 () | 124013..124318 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | - |
| HPE49_RS26195 () | 124320..124538 | - | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| HPE49_RS26200 () | 125245..125730 | + | 486 | Protein_138 | nucleotidyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|