MGE detailed information
MGE type: Conjugative plasmid MGE length: 88657 bp
Accession: NZ_CP054216 Location: 1..88657 Organism: Escherichia coli strain EcPF40 Replicon: plasmid p2
Accession: NZ_CP054216 Location: 1..88657 Organism: Escherichia coli strain EcPF40 Replicon: plasmid p2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HR076_RS24830 () | 1..1032 | + | 1032 | WP_000907863.1 | replication initiation protein | - |
| HR076_RS24835 () | 1940..2224 | + | 285 | WP_001674495.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| HR076_RS24840 () | 2224..2499 | + | 276 | WP_000421256.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HR076_RS24845 () | 2605..2886 | + | 282 | WP_001105066.1 | hypothetical protein | - |
| HR076_RS24850 () | 3078..3344 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| HR076_RS24855 () | 3344..3850 | - | 507 | WP_042095155.1 | hypothetical protein | - |
| HR076_RS24860 () | 3906..4508 | - | 603 | WP_023143808.1 | hypothetical protein | - |
| HR076_RS24865 () | 4862..6208 | + | 1347 | WP_042078371.1 | hypothetical protein | - |
| HR076_RS24870 () | 6487..8367 | + | 1881 | WP_042078373.1 | colicin | - |
| HR076_RS24875 () | 8385..8732 | - | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| HR076_RS24880 () | 8851..9198 | + | 348 | WP_000142455.1 | hypothetical protein | - |
| HR076_RS24885 () | 9216..9806 | - | 591 | WP_000194574.1 | hypothetical protein | - |
| HR076_RS24890 () | 9803..10063 | - | 261 | WP_176308076.1 | hypothetical protein | - |
| HR076_RS24895 () | 10630..11043 | + | 414 | WP_000465036.1 | hypothetical protein | - |
| HR076_RS24900 () | 11045..11824 | + | 780 | WP_001164198.1 | site-specific integrase | - |
| HR076_RS24905 () | 12004..12648 | + | 645 | WP_001144036.1 | ParA family protein | - |
| HR076_RS24910 () | 12735..13043 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| HR076_RS24915 () | 13461..14441 | + | 981 | WP_176308077.1 | plasmid segregation protein ParM | - |
| HR076_RS24920 () | 14434..14850 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| HR076_RS24925 () | 14852..16126 | - | 1275 | WP_000457498.1 | Y-family DNA polymerase | - |
| HR076_RS24930 () | 16126..16563 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HR076_RS24935 () | 16560..16808 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| HR076_RS24940 () | 17226..18128 | + | 903 | WP_077871495.1 | DUF1281 domain-containing protein | - |
| HR076_RS24945 () | 18125..18436 | + | 312 | WP_176308078.1 | hypothetical protein | - |
| HR076_RS24950 () | 18512..19195 | + | 684 | WP_000086178.1 | DNA methylase | - |
| HR076_RS24955 () | 19196..19417 | + | 222 | WP_001104887.1 | hypothetical protein | - |
| HR076_RS24960 () | 19429..19863 | + | 435 | WP_000274403.1 | DUF1380 family protein | - |
| HR076_RS24965 () | 19914..20684 | + | 771 | WP_176308079.1 | hypothetical protein | - |
| HR076_RS24970 () | 21225..21527 | + | 303 | WP_072132163.1 | antirestriction protein | - |
| HR076_RS24975 () | 21574..21996 | + | 423 | WP_000271729.1 | DUF1380 family protein | - |
| HR076_RS24980 () | 21993..22184 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| HR076_RS24985 () | 22522..22590 | - | 69 | Protein_31 | pilus protein | - |
| HR076_RS24990 () | 22959..23495 | + | 537 | WP_176308080.1 | single-stranded DNA-binding protein | - |
| HR076_RS24995 () | 23552..23785 | + | 234 | WP_000005988.1 | DUF905 family protein | - |
| HR076_RS25000 () | 23849..25807 | + | 1959 | WP_176308081.1 | ParB/RepB/Spo0J family partition protein | - |
| HR076_RS25005 () | 25862..26296 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| HR076_RS25010 () | 26293..27012 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| HR076_RS25015 () | 27009..27605 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| HR076_RS25020 () | 28068..28568 | + | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| HR076_RS25025 () | 29297..29731 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| HR076_RS25030 () | 29825..30091 | + | 267 | WP_084566375.1 | hypothetical protein | - |
| HR076_RS25035 () | 30156..31046 | + | 891 | WP_016262284.1 | Recombination-promoting nuclease RpnA | VF |
| HR076_RS25040 () | 31046..31267 | + | 222 | WP_176308082.1 | hypothetical protein | - |
| HR076_RS25045 () | 31298..31549 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| HR076_RS25050 () | 31583..31780 | - | 198 | WP_176308084.1 | hypothetical protein | - |
| HR076_RS25055 () | 32129..32977 | + | 849 | WP_001599394.1 | DUF4942 domain-containing protein | - |
| HR076_RS25060 () | 33062..33397 | - | 336 | WP_000157082.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HR076_RS25065 () | 33631..33963 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| HR076_RS25070 () | 33974..36673 | + | 2700 | WP_042078450.1 | Protein TraI | Relaxase |
| HR076_RS25075 () | 36710..39001 | - | 2292 | WP_077877997.1 | conjugal transfer protein TrbC | - |
| HR076_RS25080 () | 38994..40064 | - | 1071 | WP_012783932.1 | IncI1-type conjugal transfer protein TrbB | - |
| HR076_RS25085 () | 40083..41291 | - | 1209 | WP_042078447.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 41471..41528 | - | 58 | NuclAT_0 | - | - |
| - () | 41471..41528 | - | 58 | NuclAT_0 | - | - |
| - () | 41471..41528 | - | 58 | NuclAT_0 | - | - |
| - () | 41471..41528 | - | 58 | NuclAT_0 | - | - |
| HR076_RS25090 () | 41583..41735 | + | 153 | WP_042078455.1 | Hok/Gef family protein | Toxin Detail |
| HR076_RS25095 () | 41807..42058 | - | 252 | WP_023225283.1 | hypothetical protein | - |
| HR076_RS25100 () | 42717..42893 | - | 177 | WP_001054898.1 | hypothetical protein | - |
| HR076_RS25105 () | 43225..43434 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| HR076_RS25110 () | 43506..44168 | - | 663 | WP_042078443.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HR076_RS25115 () | 44238..46406 | - | 2169 | WP_042078442.1 | DotA/TraY family protein | - |
| HR076_RS25120 () | 46503..47087 | - | 585 | WP_023156800.1 | IncI1-type conjugal transfer protein TraX | - |
| HR076_RS25125 () | 47116..48318 | - | 1203 | WP_023156801.1 | IncI1-type conjugal transfer protein TraW | - |
| HR076_RS25130 () | 48285..48899 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| HR076_RS25135 () | 48899..51943 | - | 3045 | WP_023143799.1 | IncI1-type conjugal transfer protein TraU | - |
| HR076_RS25140 () | 52033..52833 | - | 801 | WP_001493813.1 | IncI1-type conjugal transfer protein TraT | - |
| HR076_RS25145 () | 52817..53005 | - | 189 | WP_023143800.1 | putative conjugal transfer protein TraS | - |
| HR076_RS25150 () | 53069..53473 | - | 405 | WP_024258362.1 | IncI1-type conjugal transfer protein TraR | - |
| HR076_RS25155 () | 53524..54051 | - | 528 | WP_001055571.1 | conjugal transfer protein TraQ | - |
| HR076_RS25160 () | 54051..54755 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| HR076_RS25165 () | 54755..56044 | - | 1290 | WP_023156805.1 | conjugal transfer protein TraO | - |
| HR076_RS25170 () | 56047..57030 | - | 984 | WP_001191879.1 | hypothetical protein | VF |
| HR076_RS25175 () | 57041..57733 | - | 693 | WP_023156806.1 | DotI/IcmL family type IV secretion protein | - |
| HR076_RS25180 () | 57730..58077 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| HR076_RS25185 () | 58095..61862 | - | 3768 | WP_042078433.1 | DNA primase | - |
| HR076_RS25190 () | 62061..63674 | - | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| HR076_RS25195 () | 63705..64055 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| HR076_RS25200 () | 64052..64477 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| HR076_RS25205 () | 64564..65043 | - | 480 | Protein_75 | Phospholipase D | VF |
| HR076_RS25210 () | 65058..65348 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| HR076_RS25215 () | 65345..66493 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| HR076_RS25220 () | 66490..67308 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| HR076_RS25225 () | 67305..67763 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| HR076_RS25230 () | 68158..68742 | - | 585 | WP_042078429.1 | lipopolysaccharide core heptose(II)-phosphate phosphatase | - |
| HR076_RS25235 () | 68802..70004 | - | 1203 | WP_042078427.1 | conjugal transfer protein TraF | - |
| HR076_RS25240 () | 70090..70914 | - | 825 | WP_022630873.1 | hypothetical protein | - |
| HR076_RS25245 () | 71065..72219 | - | 1155 | WP_176308083.1 | integrase | - |
| HR076_RS25250 () | 72218..72304 | + | 87 | Protein_84 | shufflon protein D' | - |
| HR076_RS25255 () | 72353..72571 | + | 219 | WP_071527775.1 | shufflon protein D' | - |
| HR076_RS25260 () | 72829..74264 | - | 1436 | Protein_86 | hypothetical protein | VF |
| HR076_RS25265 () | 74252..74908 | - | 657 | WP_042078358.1 | hypothetical protein | VF |
| HR076_RS25270 () | 74893..75453 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| HR076_RS25275 () | 75463..76077 | - | 615 | WP_001685259.1 | hypothetical protein | VF |
| HR076_RS25280 () | 76094..77179 | - | 1086 | WP_023143685.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HR076_RS25285 () | 77192..78745 | - | 1554 | WP_001685261.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HR076_RS25290 () | 78756..79208 | - | 453 | WP_001247333.1 | hypothetical protein | VF |
| HR076_RS25295 () | 79195..80490 | - | 1296 | WP_001545757.1 | type 4b pilus protein PilO2 | - |
| HR076_RS25300 () | 80483..82165 | - | 1683 | WP_032311054.1 | Outer membrane lipoprotein BfpB | VF |
| HR076_RS25305 () | 82179..82616 | - | 438 | WP_000539811.1 | hypothetical protein | VF |
| HR076_RS25310 () | 82616..83683 | - | 1068 | WP_001685263.1 | hypothetical protein | VF |
| HR076_RS25315 () | 84360..84620 | - | 261 | WP_022630593.1 | hypothetical protein | - |
| HR076_RS25320 () | 84624..84884 | - | 261 | WP_000994493.1 | hypothetical protein | - |
| HR076_RS25325 () | 84881..85135 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| HR076_RS25330 () | 85307..85990 | - | 684 | WP_000213861.1 | hypothetical protein | - |
| HR076_RS25335 () | 86244..86777 | - | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| HR076_RS25340 () | 87219..87506 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| HR076_RS25345 () | 87424..87687 | - | 264 | WP_001387472.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|