MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 124188 bp
Accession: NZ_CP054046 Location: 1..124188 Organism: Yersinia massiliensis strain 2011N-4075 Replicon: plasmid unnamed1
Accession: NZ_CP054046 Location: 1..124188 Organism: Yersinia massiliensis strain 2011N-4075 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRD68_RS00010 () | 951..1853 | + | 903 | WP_050111150.1 | RelA/SpoT domain-containing protein | - |
| HRD68_RS00015 () | 1906..3978 | + | 2073 | WP_172986710.1 | Multifunctional conjugation protein TraI | Relaxase |
| HRD68_RS00020 () | 3978..4490 | + | 513 | WP_019213361.1 | Phospholipase D | VF |
| HRD68_RS00025 () | 4637..4888 | + | 252 | WP_019213360.1 | replication regulatory protein RepA | - |
| HRD68_RS00030 () | 5316..6266 | + | 951 | WP_042807117.1 | hypothetical protein | - |
| HRD68_RS00035 () | 7015..7617 | + | 603 | WP_019213358.1 | hypothetical protein | - |
| HRD68_RS00040 () | 7706..8401 | - | 696 | WP_019213468.1 | IS6 family transposase ISYps1 | Transposase |
| HRD68_RS00045 () | 8893..9531 | - | 639 | WP_042807144.1 | DUF1120 domain-containing protein | - |
| HRD68_RS00050 () | 9820..10560 | - | 741 | WP_019212798.1 | fimbria/pilus periplasmic chaperone | - |
| HRD68_RS00055 () | 10618..12996 | - | 2379 | WP_050875729.1 | fimbrial biogenesis outer membrane usher protein | - |
| HRD68_RS00060 () | 13157..13798 | - | 642 | WP_019213442.1 | DUF1120 domain-containing protein | - |
| HRD68_RS00065 () | 14283..14921 | - | 639 | WP_019213441.1 | DUF1120 domain-containing protein | - |
| HRD68_RS00070 () | 15459..15533 | + | 75 | Protein_13 | arsenical resistance protein ArsH | - |
| HRD68_RS00075 () | 15664..16089 | - | 426 | WP_019213439.1 | glutaredoxin-dependent arsenate reductase | - |
| HRD68_RS00080 () | 16102..17391 | - | 1290 | WP_019213438.1 | arsenite efflux transporter membrane subunit ArsB | - |
| HRD68_RS00085 () | 17440..19191 | - | 1752 | WP_019213437.1 | arsenite efflux transporter ATPase subunit ArsA | - |
| HRD68_RS00090 () | 19209..19571 | - | 363 | WP_011817072.1 | arsenite efflux transporter metallochaperone ArsD | - |
| HRD68_RS00095 () | 19618..19971 | - | 354 | WP_019213436.1 | transcriptional regulator | - |
| HRD68_RS00100 () | 20333..21028 | + | 696 | WP_019213468.1 | IS6 family transposase ISYps1 | Transposase |
| HRD68_RS00105 () | 21065..21394 | - | 330 | WP_172986711.1 | hypothetical protein | - |
| HRD68_RS00110 () | 21415..22032 | - | 618 | WP_172986712.1 | hypothetical protein | - |
| HRD68_RS00115 () | 22059..22799 | - | 741 | WP_172986713.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HRD68_RS00120 () | 22807..24591 | - | 1785 | WP_172986714.1 | type IV secretory system conjugative DNA transfer family protein | - |
| HRD68_RS00125 () | 25264..25554 | - | 291 | WP_172986715.1 | hypothetical protein | - |
| HRD68_RS00130 () | 25573..25986 | - | 414 | WP_172986716.1 | H-NS histone family protein | - |
| HRD68_RS00135 () | 26015..26218 | - | 204 | WP_172986743.1 | hemolysin expression modulator Hha | - |
| HRD68_RS00140 () | 26226..26522 | - | 297 | WP_172986717.1 | hypothetical protein | - |
| HRD68_RS00145 () | 26592..27617 | - | 1026 | WP_172986718.1 | YadA-like family protein | - |
| HRD68_RS00150 () | 27715..28020 | - | 306 | WP_172986719.1 | conjugal transfer protein | - |
| HRD68_RS00155 () | 28434..28859 | - | 426 | WP_172986720.1 | cag pathogenicity island Cag12 family protein | - |
| HRD68_RS00160 () | 28846..29871 | - | 1026 | WP_172986721.1 | Type IV secretion system protein VirB11 | VF |
| HRD68_RS00165 () | 29943..31115 | - | 1173 | WP_172986744.1 | Type IV secretion system protein virB10 | VF |
| HRD68_RS00170 () | 31139..32014 | - | 876 | WP_172986745.1 | Type IV secretion system protein virB9 | VF |
| HRD68_RS00175 () | 32143..32826 | - | 684 | WP_172986722.1 | Type IV secretion system protein PtlE | VF |
| HRD68_RS00180 () | 32801..32947 | - | 147 | WP_172986723.1 | hypothetical protein | - |
| HRD68_RS00185 () | 32996..34015 | - | 1020 | WP_172986724.1 | type IV secretion system protein | - |
| HRD68_RS00190 () | 34027..34266 | - | 240 | WP_172986725.1 | EexN family lipoprotein | - |
| HRD68_RS00195 () | 34315..34569 | - | 255 | WP_050116472.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| HRD68_RS00200 () | 34566..34817 | - | 252 | WP_050116471.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin Detail |
| HRD68_RS00205 () | 34884..35597 | - | 714 | WP_172986726.1 | type IV secretion system protein | - |
| HRD68_RS00210 () | 35672..38419 | - | 2748 | WP_172986727.1 | Type IV secretion system protein virB4 | VF |
| HRD68_RS00215 () | 38438..38728 | - | 291 | WP_172986728.1 | Type IV secretion system protein PtlA | VF |
| HRD68_RS00220 () | 38732..39343 | - | 612 | WP_172986729.1 | Type IV secretion system protein virB1 | VF |
| HRD68_RS00225 () | 39775..40002 | - | 228 | WP_172986730.1 | hypothetical protein | - |
| HRD68_RS00230 () | 40288..40596 | - | 309 | WP_172986731.1 | hypothetical protein | - |
| HRD68_RS00235 () | 40724..41710 | - | 987 | WP_172986732.1 | replication initiation protein | - |
| HRD68_RS00240 () | 42781..42996 | - | 216 | WP_172986733.1 | chromosome partitioning protein ParB | - |
| HRD68_RS00245 () | 43017..43643 | - | 627 | WP_172986734.1 | AAA family ATPase | - |
| HRD68_RS00250 () | 43695..43931 | - | 237 | WP_172986735.1 | hypothetical protein | - |
| HRD68_RS00255 () | 44247..45227 | + | 981 | WP_172986736.1 | DUF1738 domain-containing protein | - |
| HRD68_RS00260 () | 45255..45503 | - | 249 | WP_172986737.1 | hypothetical protein | - |
| HRD68_RS00265 () | 45986..48148 | - | 2163 | WP_172986738.1 | type IA DNA topoisomerase | - |
| HRD68_RS00270 () | 48195..48413 | - | 219 | WP_172986739.1 | hypothetical protein | - |
| HRD68_RS00275 () | 48476..49171 | + | 696 | WP_019213468.1 | IS6 family transposase ISYps1 | Transposase |
| HRD68_RS00280 () | 49346..50082 | - | 737 | Protein_55 | IS6 family transposase IS1635 | Transposase |
| HRD68_RS00285 () | 50274..54506 | - | 4233 | WP_172986746.1 | Invasin | VF |
| HRD68_RS00290 () | 54691..55386 | - | 696 | WP_019213434.1 | IS6 family transposase ISYps1 | Transposase |
| HRD68_RS00295 () | 56156..58756 | + | 2601 | WP_145579294.1 | Outer membrane protein IcsA autotransporter | VF |
| HRD68_RS00300 () | 58871..59488 | + | 618 | WP_019213431.1 | Transcriptional regulatory protein TdiR | VF |
| HRD68_RS00305 () | 59753..60103 | - | 351 | WP_042807111.1 | hypothetical protein | - |
| HRD68_RS00310 () | 60178..60873 | - | 696 | WP_019213429.1 | IS6 family transposase ISYps1 | Transposase |
| HRD68_RS00315 () | 61355..61456 | - | 102 | Protein_62 | IS6 family transposase IS15DII | Transposase |
| HRD68_RS00320 () | 61782..62420 | + | 639 | WP_019213427.1 | DUF1120 domain-containing protein | - |
| HRD68_RS00325 () | 62904..63539 | + | 636 | WP_019213426.1 | DUF1120 domain-containing protein | - |
| HRD68_RS00330 () | 63609..63707 | - | 99 | Protein_65 | IS6 family transposase | - |
| HRD68_RS00335 () | 63738..64187 | + | 450 | WP_019213425.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| HRD68_RS00340 () | 64406..65101 | + | 696 | WP_019213424.1 | IS6 family transposase ISYps1 | Transposase |
| HRD68_RS00345 () | 65178..65894 | - | 717 | WP_081578887.1 | tyrosine-type recombinase/integrase | - |
| HRD68_RS00350 () | 66373..66690 | - | 318 | WP_019213422.1 | CcdB family protein | Toxin Detail |
| HRD68_RS00355 () | 66690..66935 | - | 246 | WP_019213421.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| HRD68_RS00360 () | 67229..67363 | - | 135 | Protein_71 | IS6 family transposase | - |
| HRD68_RS00365 () | 67416..68111 | - | 696 | WP_019213420.1 | IS6 family transposase ISYps1 | Transposase |
| HRD68_RS00370 () | 68315..68776 | + | 462 | WP_019213419.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| HRD68_RS00375 () | 68776..69351 | + | 576 | WP_042807110.1 | PIN domain-containing protein | Toxin Detail |
| HRD68_RS00380 () | 69662..70630 | + | 969 | WP_172986740.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HRD68_RS00385 () | 70668..71000 | - | 333 | WP_019213416.1 | hypothetical protein | - |
| HRD68_RS00390 () | 70997..71704 | - | 708 | WP_019213415.1 | ParA family protein | - |
| HRD68_RS00395 () | 72132..73388 | - | 1257 | WP_019213414.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HRD68_RS00400 () | 73396..73815 | - | 420 | WP_019213413.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HRD68_RS00405 () | 74385..74621 | + | 237 | WP_019213411.1 | hypothetical protein | - |
| HRD68_RS00410 () | 74681..76645 | + | 1965 | WP_019213410.1 | ParB/RepB/Spo0J family partition protein | - |
| HRD68_RS00415 () | 76680..77126 | + | 447 | WP_019213409.1 | hypothetical protein | - |
| HRD68_RS00420 () | 77123..77851 | + | 729 | WP_019213408.1 | plasmid SOS inhibition protein A | - |
| HRD68_RS00425 () | 77841..78173 | + | 333 | WP_042807109.1 | hypothetical protein | - |
| HRD68_RS00430 () | 78432..78626 | + | 195 | WP_042807108.1 | hypothetical protein | - |
| HRD68_RS00435 () | 78751..79074 | + | 324 | WP_019213405.1 | hypothetical protein | - |
| HRD68_RS00440 () | 79129..79476 | + | 348 | WP_019213404.1 | hypothetical protein | - |
| HRD68_RS00445 () | 79563..79805 | + | 243 | WP_019213403.1 | hypothetical protein | - |
| HRD68_RS00450 () | 80068..80694 | + | 627 | WP_042807127.1 | type I restriction-modification system subunit M | - |
| HRD68_RS00455 () | 80903..81115 | - | 213 | WP_019213401.1 | hypothetical protein | - |
| HRD68_RS00460 () | 81455..82324 | + | 870 | WP_019213400.1 | hypothetical protein | - |
| HRD68_RS00465 () | 82659..83105 | - | 447 | WP_042807107.1 | hypothetical protein | VF |
| HRD68_RS00470 () | 83880..84257 | + | 378 | WP_081578886.1 | relaxosome protein TraM | - |
| HRD68_RS00475 () | 84702..84902 | + | 201 | WP_019213397.1 | hypothetical protein | - |
| HRD68_RS00480 () | 85334..86359 | + | 1026 | WP_019213396.1 | LacI family DNA-binding transcriptional regulator | - |
| HRD68_RS00485 () | 86493..87948 | + | 1456 | Protein_96 | Na+/H+ antiporter NhaC | - |
| HRD68_RS00490 () | 87935..89128 | + | 1194 | WP_019213395.1 | pyridoxal phosphate-dependent aminotransferase | - |
| HRD68_RS00495 () | 89737..90501 | + | 765 | WP_172986741.1 | hypothetical protein | - |
| HRD68_RS00500 () | 90618..90824 | + | 207 | WP_019213393.1 | TraY domain-containing protein | - |
| HRD68_RS00505 () | 91031..91399 | + | 369 | WP_019213392.1 | hypothetical protein | - |
| HRD68_RS00510 () | 91424..91729 | + | 306 | WP_019213391.1 | type IV conjugative transfer system protein TraL | - |
| HRD68_RS00515 () | 91743..92312 | + | 570 | WP_019213390.1 | type IV conjugative transfer system protein TraE | - |
| HRD68_RS00520 () | 92296..93039 | + | 744 | WP_019213389.1 | type-F conjugative transfer system secretin TraK | - |
| HRD68_RS00525 () | 93049..94344 | + | 1296 | WP_019213388.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| HRD68_RS00530 () | 94392..94784 | + | 393 | WP_019213387.1 | hypothetical protein | - |
| HRD68_RS00535 () | 94784..95347 | + | 564 | WP_019213386.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HRD68_RS00540 () | 95344..97935 | + | 2592 | WP_019213385.1 | type IV secretion system protein TraC | - |
| HRD68_RS00545 () | 97967..98377 | + | 411 | WP_019213384.1 | type-F conjugative transfer system protein TrbI | - |
| HRD68_RS00550 () | 98377..98784 | + | 408 | WP_019213383.1 | hypothetical protein | - |
| HRD68_RS00555 () | 98824..99189 | + | 366 | WP_019213382.1 | hypothetical protein | - |
| HRD68_RS00560 () | 99237..99467 | + | 231 | WP_019213381.1 | hypothetical protein | - |
| HRD68_RS00565 () | 99551..99886 | + | 336 | WP_019213380.1 | hypothetical protein | - |
| HRD68_RS00570 () | 99982..100206 | + | 225 | WP_019213379.1 | hypothetical protein | - |
| HRD68_RS00575 () | 100330..100953 | + | 624 | WP_145566355.1 | type-F conjugative transfer system protein TraW | - |
| HRD68_RS00580 () | 100953..101930 | + | 978 | WP_019213377.1 | conjugal transfer pilus assembly protein TraU | - |
| HRD68_RS00585 () | 101992..102567 | + | 576 | WP_042807118.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HRD68_RS00590 () | 102551..104398 | + | 1848 | WP_019213375.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HRD68_RS00595 () | 104398..105186 | + | 789 | WP_019213374.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HRD68_RS00600 () | 105197..105478 | + | 282 | WP_145566354.1 | hypothetical protein | - |
| HRD68_RS00605 () | 105487..106011 | + | 525 | WP_019213372.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HRD68_RS00610 () | 106143..106490 | + | 348 | WP_019213371.1 | hypothetical protein | - |
| HRD68_RS00615 () | 106620..107450 | + | 831 | WP_019213370.1 | hypothetical protein | - |
| HRD68_RS00620 () | 107510..107866 | + | 357 | WP_019213369.1 | hypothetical protein | - |
| HRD68_RS00625 () | 107856..109208 | + | 1353 | WP_019213368.1 | conjugal transfer protein TraH | - |
| HRD68_RS00630 () | 109208..112120 | + | 2913 | WP_019213367.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HRD68_RS00635 () | 112117..112701 | + | 585 | WP_019213366.1 | hypothetical protein | - |
| HRD68_RS00640 () | 112911..113063 | + | 153 | WP_071822513.1 | Hok/Gef family protein | - |
| HRD68_RS00645 () | 113755..115965 | + | 2211 | WP_019213363.1 | type IV conjugative transfer system coupling protein TraD | - |
| HRD68_RS00650 () | 115965..119222 | + | 3258 | WP_172986742.1 | Multifunctional conjugation protein TraI | Relaxase |
| HRD68_RS00655 () | 119153..122182 | - | 3030 | WP_050111159.1 | Tn3 family transposase ISPsy42 | Transposase |
| HRD68_RS00660 () | 122350..122964 | + | 615 | WP_050111157.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|