MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 101648 bp
Accession: NZ_CP053813 Location: 1128255..1229902 Organism: Vibrio cholerae strain W7G Replicon: chromosome
Accession: NZ_CP053813 Location: 1128255..1229902 Organism: Vibrio cholerae strain W7G Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPY09_RS05235 () | 1124676..1125077 | + | 402 | WP_071180661.1 | thiol-disulfide oxidoreductase DCC family protein | - |
| HPY09_RS05240 () | 1125347..1127137 | - | 1791 | WP_033932716.1 | hypothetical protein | - |
| HPY09_RS05245 () | 1127472..1127945 | + | 474 | WP_000410961.1 | NYN domain-containing protein | - |
| HPY09_RS05250 () | 1127937..1128140 | - | 204 | WP_001080333.1 | DUF2986 domain-containing protein | - |
| HPY09_RS05255 () | 1128437..1129084 | - | 648 | WP_001896308.1 | LexA family transcriptional regulator | - |
| HPY09_RS05260 () | 1129202..1129453 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| HPY09_RS05265 () | 1129509..1130378 | + | 870 | WP_001896387.1 | hypothetical protein | - |
| HPY09_RS05270 () | 1130419..1131027 | + | 609 | WP_175247079.1 | hypothetical protein | - |
| HPY09_RS05275 () | 1131014..1131562 | + | 549 | WP_001896330.1 | lytic transglycosylase domain-containing protein | - |
| HPY09_RS05280 () | 1131559..1131858 | + | 300 | WP_000210563.1 | flagellar transcriptional regulator FlhD | - |
| HPY09_RS05285 () | 1131855..1132388 | + | 534 | WP_001896341.1 | transcriptional activator | - |
| HPY09_RS05290 () | 1132443..1132874 | + | 432 | WP_032468033.1 | hypothetical protein | - |
| HPY09_RS05295 () | 1133028..1133297 | - | 270 | WP_032468031.1 | hypothetical protein | - |
| HPY09_RS05300 () | 1133300..1134274 | - | 975 | WP_175246834.1 | ParM/StbA family protein | - |
| HPY09_RS05305 () | 1134739..1135182 | + | 444 | WP_001896352.1 | hypothetical protein | - |
| HPY09_RS05310 () | 1135193..1135258 | - | 66 | WP_080100006.1 | DUF4113 domain-containing protein | - |
| HPY09_RS05315 () | 1135320..1135442 | - | 123 | WP_134978575.1 | hypothetical protein | - |
| HPY09_RS05320 () | 1135439..1135738 | - | 300 | WP_043989503.1 | DNA polymerase | - |
| HPY09_RS05325 () | 1135707..1136156 | - | 450 | WP_001896356.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HPY09_RS05330 () | 1136155..1136412 | + | 258 | WP_032468030.1 | hypothetical protein | - |
| HPY09_RS05335 () | 1136866..1137772 | - | 907 | Protein_1020 | IS5 family transposase | - |
| HPY09_RS05340 () | 1138015..1140165 | + | 2151 | WP_175246835.1 | TraI domain-containing protein | - |
| HPY09_RS05345 () | 1140214..1142034 | + | 1821 | WP_032468029.1 | conjugative transfer system coupling protein TraD | - |
| HPY09_RS05350 () | 1142044..1142604 | + | 561 | WP_149519258.1 | conjugative transfer protein | - |
| HPY09_RS05355 () | 1142591..1143226 | + | 636 | WP_001896322.1 | DUF4400 domain-containing protein | - |
| HPY09_RS05360 () | 1143252..1143530 | - | 279 | WP_000058216.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| HPY09_RS05365 () | 1143527..1143850 | - | 324 | WP_001896384.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HPY09_RS05370 () | 1144031..1144312 | + | 282 | WP_000433891.1 | type IV conjugative transfer system protein TraL | - |
| HPY09_RS05375 () | 1144309..1144935 | + | 627 | WP_001896361.1 | sex pilus assembly | - |
| HPY09_RS05380 () | 1144919..1145815 | + | 897 | WP_032475897.1 | type-F conjugative transfer system secretin TraK | - |
| HPY09_RS05385 () | 1145818..1147068 | + | 1251 | WP_149519259.1 | TraB/VirB10 family protein | - |
| HPY09_RS05390 () | 1147143..1147715 | + | 573 | WP_142610872.1 | TraV family lipoprotein | - |
| HPY09_RS05395 () | 1147712..1148098 | + | 387 | WP_023584042.1 | hypothetical protein | - |
| HPY09_RS05400 () | 1148139..1148645 | - | 507 | WP_032475876.1 | GNAT family N-acetyltransferase | Toxin Detail |
| HPY09_RS05405 () | 1148636..1148902 | - | 267 | WP_001963895.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| HPY09_RS05410 () | 1149271..1149963 | + | 693 | WP_175246836.1 | DsbC family protein | - |
| HPY09_RS05415 () | 1149963..1152362 | + | 2400 | WP_024008831.1 | type IV secretion system protein TraC | - |
| HPY09_RS05420 () | 1152355..1152702 | + | 348 | WP_152118583.1 | plasmid-related protein | - |
| HPY09_RS05425 () | 1152686..1153198 | + | 513 | WP_175246837.1 | S26 family signal peptidase | - |
| HPY09_RS05430 () | 1153209..1154333 | + | 1125 | WP_175247080.1 | pilus assembly protein | - |
| HPY09_RS05435 () | 1154317..1155345 | + | 1029 | WP_175246838.1 | TraU family protein | - |
| HPY09_RS05440 () | 1155348..1159047 | + | 3700 | Protein_1041 | conjugal transfer protein TraN | - |
| HPY09_RS05445 () | 1159234..1160400 | + | 1167 | WP_175246840.1 | DUF560 domain-containing protein | - |
| HPY09_RS05450 () | 1160414..1161364 | + | 951 | WP_175246841.1 | hypothetical protein | VF |
| HPY09_RS05455 () | 1161690..1161782 | + | 93 | WP_157788703.1 | hypothetical protein | - |
| HPY09_RS05460 () | 1162685..1162822 | + | 138 | WP_149519265.1 | ABC transporter substrate-binding protein | - |
| HPY09_RS05465 () | 1162884..1163860 | + | 977 | Protein_1046 | IS630 family transposase ISVch6 | Transposase |
| HPY09_RS05470 () | 1164789..1169177 | + | 4389 | WP_001960585.1 | hypothetical protein | VF |
| HPY09_RS05475 () | 1169244..1169798 | + | 555 | WP_060780273.1 | outer membrane beta-barrel protein | - |
| HPY09_RS05480 () | 1169890..1170199 | + | 310 | Protein_1049 | IS200/IS605 family transposase | - |
| HPY09_RS05485 () | 1170283..1170912 | - | 630 | WP_175246842.1 | AcfA family outer membrane beta-barrel protein | - |
| HPY09_RS05490 () | 1170909..1171298 | - | 390 | WP_060780271.1 | hypothetical protein | - |
| HPY09_RS05495 () | 1171785..1171955 | + | 171 | WP_154581783.1 | hypothetical protein | - |
| HPY09_RS05500 () | 1172242..1172625 | + | 384 | WP_001896302.1 | hydroxyisourate hydrolase | - |
| HPY09_RS05505 () | 1172641..1173153 | + | 513 | WP_175246843.1 | heme-binding protein | - |
| HPY09_RS05510 () | 1173207..1174499 | - | 1293 | WP_060780269.1 | 1-phosphatidylinositol phosphodiesterase | VF |
| HPY09_RS05515 () | 1175161..1177071 | + | 1911 | WP_148504444.1 | hypothetical protein | VF |
| HPY09_RS05520 () | 1177413..1178198 | - | 786 | WP_148504440.1 | alpha/beta hydrolase | - |
| HPY09_RS05525 () | 1179174..1179915 | + | 742 | Protein_1058 | Toxin coregulated pilin | VF |
| HPY09_RS05530 () | 1179971..1181518 | + | 1548 | WP_175246844.1 | type II secretion system GspH family protein | - |
| HPY09_RS05535 () | 1181537..1181908 | + | 372 | WP_001961028.1 | TcpQ domain-containing protein | - |
| HPY09_RS05540 () | 1181915..1183375 | + | 1461 | WP_001961027.1 | hypothetical protein | - |
| HPY09_RS05545 () | 1183377..1183916 | + | 540 | WP_032475624.1 | hypothetical protein | - |
| HPY09_RS05550 () | 1183913..1184746 | + | 834 | WP_001896329.1 | hypothetical protein | - |
| HPY09_RS05555 () | 1184734..1185267 | + | 534 | WP_001896295.1 | hypothetical protein | - |
| HPY09_RS05560 () | 1185269..1186802 | + | 1534 | Protein_1065 | Toxin coregulated pilus biosynthesis protein T | VF |
| HPY09_RS05565 () | 1186789..1187814 | + | 1026 | WP_175246845.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HPY09_RS05570 () | 1187818..1188579 | + | 762 | WP_175247081.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| HPY09_RS05575 () | 1188654..1189331 | + | 678 | WP_001961020.1 | helix-turn-helix domain-containing protein | - |
| HPY09_RS05580 () | 1189297..1189707 | + | 411 | WP_032468018.1 | hypothetical protein | - |
| HPY09_RS05585 () | 1189795..1190592 | + | 798 | WP_001896386.1 | AraC family transcriptional regulator | - |
| HPY09_RS05590 () | 1190597..1191316 | + | 720 | WP_149519272.1 | hypothetical protein | - |
| HPY09_RS05595 () | 1191345..1192094 | + | 750 | WP_149519273.1 | hypothetical protein | VF |
| HPY09_RS05600 () | 1192142..1193203 | - | 1062 | WP_175246846.1 | hypothetical protein | - |
| HPY09_RS05605 () | 1193338..1196262 | - | 2925 | WP_175246847.1 | Metalloprotease StcE | VF |
| HPY09_RS05610 () | 1196329..1196613 | - | 285 | WP_001896376.1 | CZB domain-containing protein | - |
| HPY09_RS05615 () | 1196921..1197310 | - | 390 | WP_032468104.1 | NirD/YgiW/YdeI family stress tolerance protein | - |
| HPY09_RS05620 () | 1197563..1198369 | + | 807 | WP_043989507.1 | AraC family transcriptional regulator | - |
| HPY09_RS05625 () | 1198429..1198911 | - | 483 | WP_043989508.1 | hypothetical protein | - |
| HPY09_RS05630 () | 1198898..1199659 | - | 762 | WP_149519276.1 | Transcriptional regulator HilA | VF |
| HPY09_RS05635 () | 1199832..1202897 | - | 3066 | WP_149519277.1 | efflux RND transporter permease subunit | - |
| HPY09_RS05640 () | 1202902..1203987 | - | 1086 | WP_001896296.1 | efflux RND transporter periplasmic adaptor subunit | - |
| HPY09_RS05645 () | 1204110..1204736 | + | 627 | WP_032468106.1 | TetR/AcrR family transcriptional regulator | - |
| HPY09_RS05650 () | 1204815..1206620 | - | 1806 | WP_175246848.1 | NAD(+)--arginine ADP-ribosyltransferase Chelt | VF |
| HPY09_RS05655 () | 1207040..1207947 | + | 908 | Protein_1084 | IS5 family transposase | - |
| HPY09_RS05660 () | 1207984..1208256 | + | 273 | Protein_1085 | N-acetylneuraminic acid mutarotase | - |
| HPY09_RS05665 () | 1208358..1208984 | - | 627 | WP_032467872.1 | FABP family protein | - |
| HPY09_RS05670 () | 1209204..1209809 | - | 606 | WP_149519278.1 | hypothetical protein | - |
| HPY09_RS05675 () | 1210177..1210503 | + | 327 | WP_175246849.1 | plasmid-related protein | - |
| HPY09_RS05680 () | 1210519..1210938 | + | 420 | WP_149519280.1 | single-stranded DNA-binding protein | - |
| HPY09_RS05685 () | 1211018..1211836 | + | 819 | WP_175246850.1 | phage recombination protein Bet | - |
| HPY09_RS05690 () | 1211921..1212064 | + | 144 | WP_175246851.1 | hypothetical protein | - |
| HPY09_RS05695 () | 1212126..1213142 | + | 1017 | WP_000862954.1 | YqaJ viral recombinase family protein | - |
| HPY09_RS05700 () | 1213352..1214311 | + | 960 | WP_175246852.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| HPY09_RS05705 () | 1214311..1215078 | + | 768 | WP_149519283.1 | hypothetical protein | - |
| HPY09_RS05710 () | 1215177..1216130 | + | 954 | WP_085627050.1 | DUF3150 domain-containing protein | - |
| HPY09_RS05715 () | 1216192..1216632 | + | 441 | WP_032469941.1 | hypothetical protein | - |
| HPY09_RS05720 () | 1216702..1218357 | + | 1656 | WP_149519284.1 | VWA domain-containing protein | - |
| HPY09_RS05725 () | 1218441..1218938 | + | 498 | WP_000791199.1 | DNA repair protein RadC | - |
| HPY09_RS05730 () | 1218938..1219279 | + | 342 | WP_149519285.1 | plasmid-related protein | - |
| HPY09_RS05735 () | 1219370..1220443 | + | 1074 | Protein_1100 | toprim domain-containing protein | - |
| HPY09_RS05740 () | 1220533..1221237 | + | 705 | WP_001959189.1 | hypothetical protein | - |
| HPY09_RS05745 () | 1221330..1222274 | + | 945 | WP_032475130.1 | thioredoxin family protein | - |
| HPY09_RS05750 () | 1222277..1223665 | + | 1389 | WP_000755290.1 | conjugal transfer protein TraH | - |
| HPY09_RS05755 () | 1223669..1227238 | + | 3570 | WP_149519287.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| HPY09_RS05760 () | 1227411..1227925 | - | 515 | Protein_1105 | IS481 family transposase ISVvu4 | Transposase |
| HPY09_RS05765 () | 1228054..1228242 | - | 189 | WP_063124234.1 | AlpA family transcriptional regulator | - |
| HPY09_RS05770 () | 1228325..1229557 | - | 1233 | WP_001897809.1 | Prophage integrase IntA ; Integrase | Integrase |
| HPY09_RS05780 () | 1230188..1233238 | - | 3051 | WP_175246853.1 | efflux RND transporter permease subunit VexD | - |
| HPY09_RS05785 () | 1233238..1234332 | - | 1095 | WP_175246854.1 | multidrug efflux RND transporter periplasmic adaptor subunit VexC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|