MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 101645 bp
Accession: NZ_CP053810 Location: 1128250..1229894 Organism: Vibrio cholerae strain W6G Replicon: chromosome
Accession: NZ_CP053810 Location: 1128250..1229894 Organism: Vibrio cholerae strain W6G Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPY05_RS05235 () | 1124671..1125072 | + | 402 | WP_071180661.1 | thiol-disulfide oxidoreductase DCC family protein | - |
| HPY05_RS05240 () | 1125342..1127132 | - | 1791 | WP_033932716.1 | hypothetical protein | - |
| HPY05_RS05245 () | 1127467..1127940 | + | 474 | WP_000410961.1 | NYN domain-containing protein | - |
| HPY05_RS05250 () | 1127932..1128135 | - | 204 | WP_001080333.1 | DUF2986 domain-containing protein | - |
| HPY05_RS05255 () | 1128432..1129079 | - | 648 | WP_001896308.1 | LexA family transcriptional regulator | - |
| HPY05_RS05260 () | 1129197..1129448 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| HPY05_RS05265 () | 1129504..1130373 | + | 870 | WP_001896387.1 | hypothetical protein | - |
| HPY05_RS05270 () | 1130414..1131022 | + | 609 | WP_175247079.1 | hypothetical protein | - |
| HPY05_RS05275 () | 1131009..1131557 | + | 549 | WP_001896330.1 | lytic transglycosylase domain-containing protein | - |
| HPY05_RS05280 () | 1131554..1131853 | + | 300 | WP_000210563.1 | flagellar transcriptional regulator FlhD | - |
| HPY05_RS05285 () | 1131850..1132383 | + | 534 | WP_001896341.1 | transcriptional activator | - |
| HPY05_RS05290 () | 1132438..1132869 | + | 432 | WP_032468033.1 | hypothetical protein | - |
| HPY05_RS05295 () | 1133023..1133292 | - | 270 | WP_032468031.1 | hypothetical protein | - |
| HPY05_RS05300 () | 1133295..1134269 | - | 975 | WP_175246834.1 | ParM/StbA family protein | - |
| HPY05_RS05305 () | 1134734..1135177 | + | 444 | WP_001896352.1 | hypothetical protein | - |
| HPY05_RS05310 () | 1135188..1135253 | - | 66 | WP_080100006.1 | DUF4113 domain-containing protein | - |
| HPY05_RS05315 () | 1135315..1135437 | - | 123 | WP_134978575.1 | hypothetical protein | - |
| HPY05_RS05320 () | 1135434..1135733 | - | 300 | WP_043989503.1 | DNA polymerase | - |
| HPY05_RS05325 () | 1135702..1136151 | - | 450 | WP_001896356.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HPY05_RS05330 () | 1136150..1136407 | + | 258 | WP_032468030.1 | hypothetical protein | - |
| HPY05_RS05335 () | 1136861..1137767 | - | 907 | Protein_1020 | IS5 family transposase | - |
| HPY05_RS05340 () | 1138010..1140160 | + | 2151 | WP_175246835.1 | TraI domain-containing protein | - |
| HPY05_RS05345 () | 1140209..1142029 | + | 1821 | WP_032468029.1 | conjugative transfer system coupling protein TraD | - |
| HPY05_RS05350 () | 1142039..1142599 | + | 561 | WP_149519258.1 | conjugative transfer protein | - |
| HPY05_RS05355 () | 1142586..1143221 | + | 636 | WP_001896322.1 | DUF4400 domain-containing protein | - |
| HPY05_RS05360 () | 1143247..1143525 | - | 279 | WP_000058216.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| HPY05_RS05365 () | 1143522..1143845 | - | 324 | WP_001896384.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HPY05_RS05370 () | 1144026..1144307 | + | 282 | WP_000433891.1 | type IV conjugative transfer system protein TraL | - |
| HPY05_RS05375 () | 1144304..1144930 | + | 627 | WP_001896361.1 | sex pilus assembly | - |
| HPY05_RS05380 () | 1144914..1145811 | + | 898 | Protein_1029 | type-F conjugative transfer system secretin TraK | - |
| HPY05_RS05385 () | 1145814..1147064 | + | 1251 | WP_149519259.1 | TraB/VirB10 family protein | - |
| HPY05_RS05390 () | 1147139..1147711 | + | 573 | WP_142610872.1 | TraV family lipoprotein | - |
| HPY05_RS05395 () | 1147708..1148094 | + | 387 | WP_023584042.1 | hypothetical protein | - |
| HPY05_RS05400 () | 1148135..1148641 | - | 507 | WP_032475876.1 | GNAT family N-acetyltransferase | Toxin Detail |
| HPY05_RS05405 () | 1148632..1148898 | - | 267 | WP_001963895.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| HPY05_RS05410 () | 1149267..1149959 | + | 693 | WP_175246836.1 | DsbC family protein | - |
| HPY05_RS05415 () | 1149959..1152358 | + | 2400 | WP_024008831.1 | type IV secretion system protein TraC | - |
| HPY05_RS05420 () | 1152351..1152698 | + | 348 | WP_152118583.1 | plasmid-related protein | - |
| HPY05_RS05425 () | 1152682..1153194 | + | 513 | WP_175246837.1 | S26 family signal peptidase | - |
| HPY05_RS05430 () | 1153205..1154329 | + | 1125 | WP_175247080.1 | pilus assembly protein | - |
| HPY05_RS05435 () | 1154313..1155341 | + | 1029 | WP_175246838.1 | TraU family protein | - |
| HPY05_RS05440 () | 1155344..1159042 | + | 3699 | WP_175246839.1 | conjugal transfer protein TraN | - |
| HPY05_RS05445 () | 1159229..1160395 | + | 1167 | WP_175246840.1 | DUF560 domain-containing protein | - |
| HPY05_RS05450 () | 1160409..1161359 | + | 951 | WP_175246841.1 | hypothetical protein | VF |
| HPY05_RS05455 () | 1161685..1161777 | + | 93 | WP_157788703.1 | hypothetical protein | - |
| HPY05_RS05460 () | 1162680..1162817 | + | 138 | WP_149519265.1 | ABC transporter substrate-binding protein | - |
| HPY05_RS05465 () | 1162879..1163855 | + | 977 | Protein_1046 | IS630 family transposase ISVch6 | Transposase |
| HPY05_RS05470 () | 1164784..1169172 | + | 4389 | WP_001960585.1 | hypothetical protein | VF |
| HPY05_RS05475 () | 1169239..1169793 | + | 555 | WP_060780273.1 | outer membrane beta-barrel protein | - |
| HPY05_RS05480 () | 1169885..1170194 | + | 310 | Protein_1049 | IS200/IS605 family transposase | - |
| HPY05_RS05485 () | 1170278..1170907 | - | 630 | WP_175246842.1 | AcfA family outer membrane beta-barrel protein | - |
| HPY05_RS05490 () | 1170904..1171293 | - | 390 | WP_060780271.1 | hypothetical protein | - |
| HPY05_RS05495 () | 1171780..1171950 | + | 171 | WP_154581783.1 | hypothetical protein | - |
| HPY05_RS05500 () | 1172237..1172620 | + | 384 | WP_001896302.1 | hydroxyisourate hydrolase | - |
| HPY05_RS05505 () | 1172636..1173148 | + | 513 | WP_175246843.1 | heme-binding protein | - |
| HPY05_RS05510 () | 1173202..1174494 | - | 1293 | WP_060780269.1 | 1-phosphatidylinositol phosphodiesterase | VF |
| HPY05_RS05515 () | 1175156..1177066 | + | 1911 | WP_148504444.1 | hypothetical protein | VF |
| HPY05_RS05520 () | 1177408..1178193 | - | 786 | WP_148504440.1 | alpha/beta hydrolase | - |
| HPY05_RS05525 () | 1179169..1179909 | + | 741 | WP_142610999.1 | Toxin coregulated pilin | VF |
| HPY05_RS05530 () | 1179965..1181512 | + | 1548 | WP_175246844.1 | type II secretion system GspH family protein | - |
| HPY05_RS05535 () | 1181531..1181902 | + | 372 | WP_001961028.1 | TcpQ domain-containing protein | - |
| HPY05_RS05540 () | 1181909..1183369 | + | 1461 | WP_001961027.1 | hypothetical protein | - |
| HPY05_RS05545 () | 1183371..1183910 | + | 540 | WP_032475624.1 | hypothetical protein | - |
| HPY05_RS05550 () | 1183907..1184740 | + | 834 | WP_001896329.1 | hypothetical protein | - |
| HPY05_RS05555 () | 1184728..1185261 | + | 534 | WP_001896295.1 | hypothetical protein | - |
| HPY05_RS05560 () | 1185263..1186795 | + | 1533 | WP_001896291.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HPY05_RS05565 () | 1186782..1187807 | + | 1026 | WP_175246845.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HPY05_RS05570 () | 1187811..1188572 | + | 762 | WP_175247081.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| HPY05_RS05575 () | 1188647..1189324 | + | 678 | WP_001961020.1 | helix-turn-helix domain-containing protein | - |
| HPY05_RS05580 () | 1189290..1189700 | + | 411 | WP_032468018.1 | hypothetical protein | - |
| HPY05_RS05585 () | 1189788..1190585 | + | 798 | WP_001896386.1 | AraC family transcriptional regulator | - |
| HPY05_RS05590 () | 1190590..1191309 | + | 720 | WP_149519272.1 | hypothetical protein | - |
| HPY05_RS05595 () | 1191338..1192087 | + | 750 | WP_149519273.1 | hypothetical protein | VF |
| HPY05_RS05600 () | 1192135..1193196 | - | 1062 | WP_175246846.1 | hypothetical protein | - |
| HPY05_RS05605 () | 1193331..1196255 | - | 2925 | WP_175246847.1 | Metalloprotease StcE | VF |
| HPY05_RS05610 () | 1196322..1196606 | - | 285 | WP_001896376.1 | CZB domain-containing protein | - |
| HPY05_RS05615 () | 1196914..1197303 | - | 390 | WP_032468104.1 | NirD/YgiW/YdeI family stress tolerance protein | - |
| HPY05_RS05620 () | 1197556..1198362 | + | 807 | WP_043989507.1 | AraC family transcriptional regulator | - |
| HPY05_RS05625 () | 1198422..1198904 | - | 483 | WP_043989508.1 | hypothetical protein | - |
| HPY05_RS05630 () | 1198891..1199652 | - | 762 | WP_149519276.1 | Transcriptional regulator HilA | VF |
| HPY05_RS05635 () | 1199825..1202890 | - | 3066 | WP_149519277.1 | efflux RND transporter permease subunit | - |
| HPY05_RS05640 () | 1202895..1203980 | - | 1086 | WP_001896296.1 | efflux RND transporter periplasmic adaptor subunit | - |
| HPY05_RS05645 () | 1204103..1204729 | + | 627 | WP_032468106.1 | TetR/AcrR family transcriptional regulator | - |
| HPY05_RS05650 () | 1204808..1206613 | - | 1806 | WP_175246848.1 | NAD(+)--arginine ADP-ribosyltransferase Chelt | VF |
| HPY05_RS05655 () | 1207033..1207940 | + | 908 | Protein_1084 | IS5 family transposase | - |
| HPY05_RS05660 () | 1207977..1208249 | + | 273 | Protein_1085 | N-acetylneuraminic acid mutarotase | - |
| HPY05_RS05665 () | 1208350..1208976 | - | 627 | WP_032467872.1 | FABP family protein | - |
| HPY05_RS05670 () | 1209196..1209801 | - | 606 | WP_149519278.1 | hypothetical protein | - |
| HPY05_RS05675 () | 1210169..1210495 | + | 327 | WP_175246849.1 | plasmid-related protein | - |
| HPY05_RS05680 () | 1210511..1210930 | + | 420 | WP_149519280.1 | single-stranded DNA-binding protein | - |
| HPY05_RS05685 () | 1211010..1211828 | + | 819 | WP_175246850.1 | phage recombination protein Bet | - |
| HPY05_RS05690 () | 1211913..1212056 | + | 144 | WP_175246851.1 | hypothetical protein | - |
| HPY05_RS05695 () | 1212118..1213134 | + | 1017 | WP_000862954.1 | YqaJ viral recombinase family protein | - |
| HPY05_RS05700 () | 1213344..1214303 | + | 960 | WP_175246852.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| HPY05_RS05705 () | 1214303..1215070 | + | 768 | WP_149519283.1 | hypothetical protein | - |
| HPY05_RS05710 () | 1215169..1216122 | + | 954 | WP_085627050.1 | DUF3150 domain-containing protein | - |
| HPY05_RS05715 () | 1216184..1216624 | + | 441 | WP_032469941.1 | hypothetical protein | - |
| HPY05_RS05720 () | 1216694..1218349 | + | 1656 | WP_149519284.1 | VWA domain-containing protein | - |
| HPY05_RS05725 () | 1218433..1218930 | + | 498 | WP_000791199.1 | DNA repair protein RadC | - |
| HPY05_RS05730 () | 1218930..1219271 | + | 342 | WP_149519285.1 | plasmid-related protein | - |
| HPY05_RS05735 () | 1219362..1220435 | + | 1074 | Protein_1100 | toprim domain-containing protein | - |
| HPY05_RS05740 () | 1220525..1221229 | + | 705 | WP_001959189.1 | hypothetical protein | - |
| HPY05_RS05745 () | 1221322..1222266 | + | 945 | WP_032475130.1 | thioredoxin family protein | - |
| HPY05_RS05750 () | 1222269..1223657 | + | 1389 | WP_000755290.1 | conjugal transfer protein TraH | - |
| HPY05_RS05755 () | 1223661..1227230 | + | 3570 | WP_149519287.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| HPY05_RS05760 () | 1227403..1227917 | - | 515 | Protein_1105 | IS481 family transposase ISVvu4 | Transposase |
| HPY05_RS05765 () | 1228046..1228234 | - | 189 | WP_063124234.1 | AlpA family transcriptional regulator | - |
| HPY05_RS05770 () | 1228317..1229549 | - | 1233 | WP_001897809.1 | Prophage integrase IntA ; Integrase | Integrase |
| HPY05_RS05780 () | 1230180..1233230 | - | 3051 | WP_175246853.1 | efflux RND transporter permease subunit VexD | - |
| HPY05_RS05785 () | 1233230..1234324 | - | 1095 | WP_175246854.1 | multidrug efflux RND transporter periplasmic adaptor subunit VexC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|