MGE detailed information
MGE type: Conjugative plasmid MGE length: 80217 bp
Accession: NZ_CP053755 Location: 1..80217 Organism: Shigella sonnei strain 506 Replicon: plasmid pMHMC-004
Accession: NZ_CP053755 Location: 1..80217 Organism: Shigella sonnei strain 506 Replicon: plasmid pMHMC-004
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COO90_RS26675 (50) | 50..2329 | - | 2280 | WP_151106457.1 | type IV conjugative transfer system coupling protein TraD | - |
| COO90_RS26680 (2380) | 2380..3117 | - | 738 | WP_012881122.1 | hypothetical protein | - |
| COO90_RS26685 (3320) | 3320..4051 | - | 732 | WP_012881123.1 | conjugal transfer complement resistance protein TraT | - |
| COO90_RS26690 (4065) | 4065..4574 | - | 510 | WP_000628111.1 | conjugal transfer entry exclusion protein TraS | - |
| COO90_RS26695 (4571) | 4571..7396 | - | 2826 | WP_033807963.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| COO90_RS26700 (7393) | 7393..8766 | - | 1374 | WP_033807962.1 | conjugal transfer pilus assembly protein TraH | - |
| COO90_RS26705 (8753) | 8753..9145 | - | 393 | WP_000659962.1 | F-type conjugal transfer protein TrbF | - |
| COO90_RS26710 (9126) | 9126..9473 | - | 348 | WP_071571857.1 | P-type conjugative transfer protein TrbJ | - |
| COO90_RS26715 (9403) | 9403..9948 | - | 546 | WP_000059829.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| COO90_RS26720 (9935) | 9935..10219 | - | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| COO90_RS26725 (10300) | 10300..10635 | + | 336 | WP_001620807.1 | hypothetical protein | - |
| COO90_RS26730 (10616) | 10616..10957 | - | 342 | WP_000556795.1 | conjugal transfer protein TrbA | - |
| COO90_RS26735 (10971) | 10971..11714 | - | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| COO90_RS26740 (11707) | 11707..11964 | - | 258 | WP_033807961.1 | conjugal transfer protein TrbE | - |
| COO90_RS26745 (11991) | 11991..13895 | - | 1905 | WP_225620370.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| COO90_RS26750 (14131) | 14131..14511 | - | 381 | WP_001462111.1 | hypothetical protein | - |
| COO90_RS26755 (14508) | 14508..15146 | - | 639 | WP_033807960.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| COO90_RS26760 (15155) | 15155..15460 | - | 306 | WP_000224418.1 | hypothetical protein | - |
| COO90_RS26765 (15490) | 15490..16482 | - | 993 | WP_000830849.1 | conjugal transfer pilus assembly protein TraU | - |
| COO90_RS26770 (16479) | 16479..17111 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| COO90_RS26775 (17108) | 17108..17494 | - | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| COO90_RS26780 (17491) | 17491..20121 | - | 2631 | WP_000069772.1 | type IV secretion system protein TraC | - |
| COO90_RS26785 (20247) | 20247..20594 | - | 348 | WP_000836682.1 | hypothetical protein | - |
| COO90_RS26790 (20622) | 20622..20840 | - | 219 | WP_033807959.1 | hypothetical protein | - |
| COO90_RS26795 (20939) | 20939..21412 | - | 474 | WP_033807958.1 | hypothetical protein | - |
| COO90_RS26800 (21405) | 21405..21818 | - | 414 | WP_000549589.1 | hypothetical protein | - |
| COO90_RS26805 (21811) | 21811..22032 | - | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| COO90_RS26810 (22167) | 22167..22682 | - | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| COO90_RS26815 (22679) | 22679..22999 | - | 321 | WP_012881128.1 | conjugal transfer protein TrbD | - |
| COO90_RS26820 (22986) | 22986..23576 | - | 591 | WP_000002784.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| COO90_RS26825 (23566) | 23566..24993 | - | 1428 | WP_033807957.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| COO90_RS26830 (24993) | 24993..25721 | - | 729 | WP_001230769.1 | type-F conjugative transfer system secretin TraK | - |
| COO90_RS26835 (25708) | 25708..26274 | - | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| COO90_RS26840 (26296) | 26296..26607 | - | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| COO90_RS26845 (26622) | 26622..26981 | - | 360 | WP_001098994.1 | type IV conjugative transfer system pilin TraA | - |
| COO90_RS26850 (27015) | 27015..27242 | - | 228 | WP_000589556.1 | conjugal transfer relaxosome protein TraY | - |
| COO90_RS26855 (27362) | 27362..28009 | - | 648 | WP_128867105.1 | transcriptional regulator TraJ family protein | - |
| COO90_RS26860 (28201) | 28201..28584 | - | 384 | WP_001151529.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| COO90_RS26865 (28917) | 28917..29507 | + | 591 | WP_000252683.1 | transglycosylase SLT domain-containing protein | - |
| COO90_RS26870 (29804) | 29804..30625 | - | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| COO90_RS26875 (30736) | 30736..31032 | - | 297 | WP_001272251.1 | hypothetical protein | - |
| COO90_RS26880 (31332) | 31332..31628 | + | 297 | Protein_42 | hypothetical protein | - |
| COO90_RS26885 (31947) | 31947..32072 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| COO90_RS26890 (32014) | 32014..32163 | - | 150 | Protein_44 | plasmid maintenance protein Mok | - |
| COO90_RS26895 (32185) | 32185..32364 | + | 180 | WP_001334662.1 | hypothetical protein | - |
| - (32149) | 32149..32373 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (32149) | 32149..32373 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (32149) | 32149..32373 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (32149) | 32149..32373 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| COO90_RS26900 (32342) | 32342..33104 | - | 763 | Protein_46 | plasmid SOS inhibition protein A | - |
| COO90_RS26905 (33101) | 33101..33535 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| COO90_RS26910 (33590) | 33590..35548 | - | 1959 | WP_112324844.1 | ParB/RepB/Spo0J family partition protein | - |
| COO90_RS26915 (35612) | 35612..35845 | - | 234 | WP_000005971.1 | DUF905 domain-containing protein | - |
| COO90_RS26920 (35901) | 35901..36422 | - | 522 | WP_033807850.1 | single-stranded DNA-binding protein | - |
| COO90_RS26925 (36721) | 36721..37164 | + | 444 | Protein_51 | hypothetical protein | - |
| COO90_RS26930 (37250) | 37250..37813 | - | 564 | WP_016240496.1 | class I SAM-dependent methyltransferase | - |
| COO90_RS26935 (37860) | 37860..39221 | - | 1362 | WP_000170671.1 | DUF3560 domain-containing protein | - |
| COO90_RS26940 (39273) | 39273..39503 | - | 231 | WP_000218647.1 | hypothetical protein | - |
| COO90_RS26945 (40541) | 40541..40732 | - | 192 | WP_001027493.1 | hypothetical protein | - |
| COO90_RS26950 (40729) | 40729..41151 | - | 423 | WP_000271762.1 | DUF1380 family protein | - |
| COO90_RS26955 (41198) | 41198..41623 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| COO90_RS26960 (42041) | 42041..42817 | - | 777 | WP_001383963.1 | hypothetical protein | - |
| COO90_RS26965 (42868) | 42868..43302 | - | 435 | WP_000274503.1 | DUF1380 family protein | - |
| COO90_RS26970 (43316) | 43316..43537 | - | 222 | WP_001104881.1 | hypothetical protein | - |
| COO90_RS26975 (43538) | 43538..44221 | - | 684 | WP_000085883.1 | DNA methylase | - |
| COO90_RS26980 (44298) | 44298..44591 | - | 294 | WP_032146011.1 | hypothetical protein | - |
| COO90_RS26985 (44738) | 44738..45700 | + | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| COO90_RS26990 (45703) | 45703..46053 | + | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| COO90_RS26995 (46176) | 46176..46457 | - | 282 | WP_001333089.1 | hypothetical protein | - |
| COO90_RS27000 (46585) | 46585..46819 | - | 235 | Protein_66 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| COO90_RS27010 (49728) | 49728..50465 | - | 738 | WP_013362818.1 | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | - |
| COO90_RS27015 (50591) | 50591..50686 | - | 96 | WP_013362819.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| COO90_RS27020 (50821) | 50821..51525 | + | 705 | WP_001067834.1 | IS6-like element IS26 family transposase | - |
| COO90_RS27025 (51647) | 51647..52552 | + | 906 | WP_000219391.1 | Mph(A) family macrolide 2'-phosphotransferase | - |
| COO90_RS27030 (52549) | 52549..53787 | + | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| COO90_RS27035 (53787) | 53787..54371 | + | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| COO90_RS27040 (54864) | 54864..55628 | - | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| COO90_RS27045 (55746) | 55746..55811 | - | 66 | Protein_75 | EAL domain-containing protein | - |
| COO90_RS27050 (55855) | 55855..56160 | - | 306 | WP_000130000.1 | PadR family transcriptional regulator | - |
| COO90_RS27055 (56171) | 56171..57376 | - | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| COO90_RS27060 (57532) | 57532..57735 | - | 204 | WP_000376616.1 | hypothetical protein | - |
| COO90_RS27065 (57863) | 57863..58702 | - | 840 | WP_000259031.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | - |
| COO90_RS27070 (58696) | 58696..59043 | - | 348 | WP_000679427.1 | quaternary ammonium compound efflux SMR transporter QacE delta 1 | - |
| COO90_RS27075 (59249) | 59249..60037 | - | 789 | WP_000503573.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5 | - |
| COO90_RS27080 (60168) | 60168..60641 | - | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| COO90_RS27085 (60799) | 60799..61812 | + | 1014 | WP_000845048.1 | class 1 integron integrase IntI1 | - |
| COO90_RS27090 (62015) | 62015..62365 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| COO90_RS27095 (62564) | 62564..63268 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| COO90_RS27100 (63334) | 63334..63765 | + | 432 | Protein_86 | recombinase family protein | - |
| COO90_RS27105 (63948) | 63948..64808 | + | 861 | WP_000027057.1 | broad-spectrum class A beta-lactamase TEM-1 | - |
| COO90_RS27110 (64958) | 64958..65056 | - | 99 | Protein_88 | IS1 family transposase | - |
| COO90_RS27115 (65085) | 65085..66395 | - | 1311 | WP_001262765.1 | DUF262 domain-containing protein | - |
| COO90_RS27120 (66680) | 66680..67081 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| COO90_RS27125 (67014) | 67014..67271 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| COO90_RS27130 (67364) | 67364..68017 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| COO90_RS27135 (68956) | 68956..69813 | - | 858 | WP_016240488.1 | incFII family plasmid replication initiator RepA | - |
| COO90_RS27140 (69806) | 69806..69880 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| COO90_RS27145 (70125) | 70125..70373 | - | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| COO90_RS27150 (70658) | 70658..70807 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| - (70852) | 70852..70911 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (70852) | 70852..70911 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (70852) | 70852..70911 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (70852) | 70852..70911 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| COO90_RS27155 (71054) | 71054..71527 | - | 474 | WP_016240489.1 | hypothetical protein | - |
| COO90_RS27160 (71682) | 71682..72272 | - | 591 | WP_033807967.1 | DUF2726 domain-containing protein | - |
| COO90_RS27165 (72310) | 72310..72519 | - | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| COO90_RS27170 (72565) | 72565..73026 | - | 462 | WP_001233850.1 | thermonuclease family protein | - |
| COO90_RS27175 (73272) | 73272..73484 | - | 213 | WP_001301409.1 | ANR family transcriptional regulator | - |
| COO90_RS27180 (73616) | 73616..74176 | - | 561 | WP_033807966.1 | fertility inhibition protein FinO | - |
| COO90_RS27185 (74231) | 74231..74977 | - | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|