MGE detailed information
MGE type: Genomic_island MGE length: 16379 bp
Accession: NZ_CP053736 Location: 1888292..1904670 Organism: Escherichia coli strain CP8-3_Sichuan Replicon: chromosome
Accession: NZ_CP053736 Location: 1888292..1904670 Organism: Escherichia coli strain CP8-3_Sichuan Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HP430_RS09015 () | 1883578..1884582 | - | 1005 | Protein_1760 | acid resistance gamma-aminobutyrate antiporter GadC | - |
| HP430_RS09020 () | 1884594..1885291 | - | 698 | Protein_1761 | IS1 family transposase | - |
| HP430_RS09025 () | 1885320..1885979 | - | 660 | WP_172614265.1 | ATP-binding cassette domain-containing protein | - |
| HP430_RS09030 () | 1885989..1886792 | - | 804 | WP_001565586.1 | ABC transporter ATP-binding protein/permease | - |
| HP430_RS09035 () | 1886995..1887117 | + | 123 | WP_120795387.1 | protein YneP | - |
| HP430_RS09040 () | 1887083..1888240 | - | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| HP430_RS09045 () | 1888292..1889974 | - | 1683 | WP_001295684.1 | sulfatase | - |
| HP430_RS09050 () | 1890376..1891137 | - | 762 | WP_000060492.1 | acid stress response transcriptional regulator YdeO | - |
| HP430_RS09055 () | 1891212..1891409 | - | 198 | WP_000543384.1 | two-component system connector SafA | - |
| HP430_RS09060 () | 1891657..1893936 | - | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| HP430_RS09065 () | 1894270..1895184 | - | 915 | WP_000520676.1 | fimbrial protein | - |
| HP430_RS09070 () | 1895243..1895746 | - | 504 | WP_000825452.1 | type 1 fimbrial protein | - |
| HP430_RS09075 () | 1895759..1896289 | - | 531 | WP_000876763.1 | type 1 fimbrial protein | - |
| HP430_RS09080 () | 1896303..1897529 | - | 1227 | Protein_1773 | fimbrial biogenesis outer membrane usher protein | - |
| HP430_RS09085 () | 1897784..1897992 | - | 209 | Protein_1774 | helix-turn-helix transcriptional regulator | - |
| HP430_RS09090 () | 1898304..1899614 | - | 1311 | WP_172614266.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| HP430_RS09095 () | 1899614..1899880 | - | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| HP430_RS09100 () | 1900103..1904532 | - | 4430 | Protein_1777 | autotransporter barrel domain-containing lipoprotein | - |
| HP430_RS09105 () | 1904599..1904670 | - | 72 | Protein_1778 | hypothetical protein | - |
| HP430_RS09110 () | 1905201..1906793 | - | 1593 | WP_000113108.1 | autoinducer-2 kinase | - |
| HP430_RS09115 () | 1906872..1907825 | - | 954 | WP_000154342.1 | transcriptional regulator LsrR | - |
| HP430_RS09120 () | 1908074..1909609 | + | 1536 | WP_001194860.1 | autoinducer 2 ABC transporter ATP-binding protein LsrA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.009 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.009 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.009 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.009 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.009 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.009 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.01 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.009 |