MGE detailed information
MGE type: Prophage MGE length: 21706 bp
Accession: NZ_CP053607 Location: 1577899..1599604 Organism: Escherichia coli strain NEB5-alpha_F'Iq Replicon: chromosome
Accession: NZ_CP053607 Location: 1577899..1599604 Organism: Escherichia coli strain NEB5-alpha_F'Iq Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO392_RS07645 () | 1574414..1575160 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| HO392_RS07650 () | 1575249..1575935 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| HO392_RS07655 () | 1576112..1576315 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| HO392_RS07660 () | 1576350..1577810 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| HO392_RS07665 () | 1577899..1579266 | - | 1368 | Protein_1500 | MHS family MFS transporter | - |
| HO392_RS07670 () | 1579787..1579900 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| HO392_RS07675 () | 1579969..1580202 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| HO392_RS07680 () | 1580519..1581109 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| HO392_RS07685 () | 1581207..1581782 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| HO392_RS07690 () | 1581782..1582744 | - | 963 | WP_001027733.1 | phage tail protein | - |
| HO392_RS07695 () | 1582695..1583264 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| HO392_RS07700 () | 1583653..1583886 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| HO392_RS07705 () | 1583944..1584354 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| HO392_RS07710 () | 1584506..1584679 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| HO392_RS07715 () | 1584851..1585006 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| HO392_RS07720 () | 1585085..1585150 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| HO392_RS07725 () | 1585153..1585341 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| HO392_RS07730 () | 1585352..1585564 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| HO392_RS07735 () | 1585927..1586424 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| HO392_RS07740 () | 1586421..1586954 | - | 534 | WP_001092971.1 | lysozyme | - |
| HO392_RS07745 () | 1586951..1587262 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| HO392_RS07750 () | 1587267..1587482 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| HO392_RS07755 () | 1588236..1588451 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| HO392_RS07760 () | 1588752..1588964 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| HO392_RS07765 () | 1589019..1589108 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| HO392_RS07770 () | 1589199..1589384 | - | 186 | WP_151275831.1 | hypothetical protein | - |
| HO392_RS07775 () | 1589385..1590137 | - | 753 | WP_001047135.1 | antitermination protein | - |
| HO392_RS07780 () | 1590151..1591200 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| HO392_RS07785 () | 1591202..1591480 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| HO392_RS07790 () | 1591547..1591798 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| HO392_RS07795 () | 1592015..1592170 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| HO392_RS07800 () | 1592242..1592529 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| HO392_RS07805 () | 1592529..1592768 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| HO392_RS07810 () | 1592793..1593098 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| HO392_RS07815 () | 1593301..1593633 | + | 333 | WP_001301033.1 | protein FlxA | - |
| HO392_RS07820 () | 1594070..1594219 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| HO392_RS07825 () | 1594254..1594532 | - | 279 | Protein_1532 | hypothetical protein | - |
| HO392_RS07830 () | 1594516..1594746 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| HO392_RS07835 () | 1594830..1595237 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| HO392_RS07840 () | 1595404..1595559 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| HO392_RS07845 () | 1595719..1595937 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| HO392_RS07855 () | 1596505..1596693 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| HO392_RS07860 () | 1596690..1596881 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| HO392_RS07865 () | 1596974..1597741 | + | 768 | Protein_1539 | exonuclease | - |
| HO392_RS07870 () | 1597738..1598433 | + | 696 | Protein_1540 | IS3 family transposase IS2 | Transposase |
| HO392_RS07875 () | 1598447..1599604 | + | 1158 | Protein_1541 | Putative defective protein IntQ ; Integrase | Integrase |
| HO392_RS07880 () | 1599624..1599734 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| HO392_RS07885 () | 1599792..1600811 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| HO392_RS07890 () | 1600823..1602037 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| HO392_RS07895 () | 1602243..1602569 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| HO392_RS07900 () | 1602704..1603045 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| HO392_RS07905 () | 1603080..1603640 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| HO392_RS07910 () | 1603643..1604353 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |