MGE detailed information
MGE type: Prophage MGE length: 22906 bp
Accession: NZ_CP053605 Location: 1517365..1540270 Organism: Escherichia coli strain NEB_Turbo Replicon: chromosome
Accession: NZ_CP053605 Location: 1517365..1540270 Organism: Escherichia coli strain NEB_Turbo Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO393_RS07295 () | 1513880..1514626 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| HO393_RS07300 () | 1514715..1515401 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| HO393_RS07305 () | 1515578..1515781 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| HO393_RS07310 () | 1515816..1517276 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| HO393_RS07315 () | 1517365..1518648 | - | 1284 | WP_000347482.1 | MHS family MFS transporter | - |
| HO393_RS07320 () | 1519253..1519366 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| HO393_RS07325 () | 1519435..1519500 | + | 66 | Protein_1429 | cold shock protein YdfK | - |
| HO393_RS07330 () | 1519531..1520547 | + | 1017 | WP_010723085.1 | IS5 family transposase IS5D | Transposase |
| HO393_RS07335 () | 1520694..1520867 | + | 174 | Protein_1431 | cold shock protein YdfK | - |
| HO393_RS07340 () | 1521184..1521774 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| HO393_RS07345 () | 1521872..1522447 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| HO393_RS07350 () | 1522447..1523409 | - | 963 | WP_001027733.1 | phage tail protein | - |
| HO393_RS07355 () | 1523360..1523929 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| HO393_RS07360 () | 1524318..1524551 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| HO393_RS07365 () | 1524609..1525019 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| HO393_RS07370 () | 1525171..1525344 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| HO393_RS07375 () | 1525516..1525671 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| HO393_RS07380 () | 1525750..1525815 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| HO393_RS07385 () | 1525818..1526006 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| HO393_RS07390 () | 1526017..1526229 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| HO393_RS07395 () | 1526592..1527089 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| HO393_RS07400 () | 1527086..1527619 | - | 534 | WP_001092971.1 | lysozyme | - |
| HO393_RS07405 () | 1527616..1527927 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| HO393_RS07410 () | 1527932..1528147 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| HO393_RS07415 () | 1528901..1529116 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| HO393_RS07420 () | 1529417..1529629 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| HO393_RS07425 () | 1529684..1529773 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| HO393_RS07430 () | 1530051..1530803 | - | 753 | WP_001047135.1 | antitermination protein | - |
| HO393_RS07435 () | 1530817..1531866 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| HO393_RS07440 () | 1531868..1532146 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| HO393_RS07445 () | 1532213..1532464 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| HO393_RS07450 () | 1532681..1532836 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| HO393_RS07455 () | 1532908..1533195 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| HO393_RS07460 () | 1533195..1533434 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| HO393_RS07465 () | 1533459..1533764 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| HO393_RS07470 () | 1533967..1534299 | + | 333 | WP_001301033.1 | protein FlxA | - |
| HO393_RS07475 () | 1534736..1534885 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| HO393_RS07480 () | 1534920..1535198 | - | 279 | Protein_1460 | hypothetical protein | - |
| HO393_RS07485 () | 1535182..1535412 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| HO393_RS07490 () | 1535496..1535903 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| HO393_RS07495 () | 1536070..1536225 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| HO393_RS07500 () | 1536385..1536603 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| HO393_RS07505 () | 1536607..1536771 | - | 165 | WP_014639039.1 | hypothetical protein | - |
| HO393_RS07510 () | 1537171..1537359 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| HO393_RS07515 () | 1537356..1537547 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| HO393_RS07520 () | 1537640..1538407 | + | 768 | Protein_1468 | exonuclease | - |
| HO393_RS07525 () | 1538404..1539099 | + | 696 | Protein_1469 | IS3 family transposase IS2 | Transposase |
| HO393_RS07530 () | 1539113..1540270 | + | 1158 | Protein_1470 | Putative defective protein IntQ ; Integrase | Integrase |
| HO393_RS07535 () | 1540290..1540400 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| HO393_RS07540 () | 1540458..1541477 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| HO393_RS07545 () | 1541489..1542703 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| HO393_RS07550 () | 1542909..1543235 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| HO393_RS07555 () | 1543370..1543711 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| HO393_RS07560 () | 1543746..1544306 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| HO393_RS07565 () | 1544309..1545019 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.002 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.003 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.001 |