MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP053605 Location: 1298363..1320037 Organism: Escherichia coli strain NEB_Turbo Replicon: chromosome
Accession: NZ_CP053605 Location: 1298363..1320037 Organism: Escherichia coli strain NEB_Turbo Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO393_RS06300 () | 1294413..1295396 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| HO393_RS06305 () | 1295874..1297247 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| HO393_RS06310 () | 1297376..1298311 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| HO393_RS06315 () | 1298363..1299598 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| HO393_RS06320 () | 1299600..1299815 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| HO393_RS06325 () | 1299894..1300103 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1299919..1300097 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1299919..1300097 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1299919..1300097 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1299919..1300097 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| HO393_RS06330 () | 1300096..1300290 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| HO393_RS06335 () | 1300347..1301156 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| HO393_RS06340 () | 1301149..1303749 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| HO393_RS06345 () | 1303851..1304126 | - | 276 | WP_000632297.1 | protein RacC | - |
| HO393_RS06350 () | 1304201..1304371 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| HO393_RS06355 () | 1304371..1304592 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| HO393_RS06360 () | 1305034..1305522 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| HO393_RS06365 () | 1305519..1305674 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| HO393_RS06370 () | 1306128..1306604 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| HO393_RS06375 () | 1306728..1307024 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| HO393_RS06380 () | 1307047..1307469 | + | 423 | WP_000693797.1 | phage protein | - |
| HO393_RS06385 () | 1307482..1308339 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| HO393_RS06390 () | 1308346..1309092 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| HO393_RS06395 () | 1309115..1309675 | + | 561 | WP_000450663.1 | DUF1627 domain-containing protein | - |
| HO393_RS06400 () | 1309763..1309948 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| HO393_RS06405 () | 1310145..1311602 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| HO393_RS06410 () | 1311740..1312003 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| HO393_RS06415 () | 1311984..1312343 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| HO393_RS06420 () | 1312817..1313749 | + | 933 | Protein_1248 | phage tail length tape measure family protein | - |
| HO393_RS06425 () | 1313752..1313967 | + | 216 | Protein_1249 | Ail/Lom family outer membrane beta-barrel protein | - |
| HO393_RS06430 () | 1314109..1315089 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| HO393_RS06435 () | 1315159..1315347 | + | 189 | Protein_1251 | Ail/Lom family outer membrane beta-barrel protein | - |
| HO393_RS06440 () | 1315412..1318774 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| HO393_RS06445 () | 1318774..1319349 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| HO393_RS06450 () | 1319447..1320037 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| HO393_RS06455 () | 1320354..1320587 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| HO393_RS06460 () | 1320656..1320769 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| HO393_RS06465 () | 1321548..1321982 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| HO393_RS06470 () | 1322123..1323256 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |