MGE detailed information
MGE type: Prophage MGE length: 23043 bp
Accession: NZ_CP053604 Location: 1721269..1744311 Organism: Escherichia coli strain NEB10-beta Replicon: chromosome
Accession: NZ_CP053604 Location: 1721269..1744311 Organism: Escherichia coli strain NEB10-beta Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO394_RS08335 () | 1717784..1718530 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| HO394_RS08340 () | 1718619..1719305 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| HO394_RS08345 () | 1719482..1719685 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| HO394_RS08350 () | 1719720..1721180 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| HO394_RS08355 () | 1721269..1722552 | - | 1284 | WP_000347482.1 | MHS family MFS transporter | - |
| HO394_RS08360 () | 1723157..1723270 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| HO394_RS08365 () | 1723339..1723572 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| HO394_RS08370 () | 1723889..1724479 | + | 591 | WP_000078177.1 | recombinase family protein | - |
| HO394_RS08375 () | 1724577..1725152 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| HO394_RS08380 () | 1725152..1726114 | - | 963 | WP_001027733.1 | phage tail protein | - |
| HO394_RS08385 () | 1726065..1726634 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| HO394_RS08390 () | 1727023..1727256 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| HO394_RS08395 () | 1727314..1727724 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| HO394_RS08400 () | 1727876..1728049 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| HO394_RS08405 () | 1728221..1728376 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| HO394_RS08410 () | 1728455..1728520 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| HO394_RS08415 () | 1728523..1728711 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| HO394_RS08420 () | 1728722..1728934 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| HO394_RS08425 () | 1729297..1729794 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| HO394_RS08430 () | 1729791..1730324 | - | 534 | WP_001092971.1 | lysozyme | - |
| HO394_RS08435 () | 1730321..1730632 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| HO394_RS08440 () | 1730637..1730852 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| HO394_RS08445 () | 1731606..1731821 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| HO394_RS08450 () | 1732122..1732334 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| HO394_RS08455 () | 1732389..1732478 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| HO394_RS08460 () | 1732756..1733508 | - | 753 | WP_001047135.1 | antitermination protein | - |
| HO394_RS08465 () | 1733522..1734571 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| HO394_RS08470 () | 1734573..1734851 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| HO394_RS08475 () | 1734918..1735169 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| HO394_RS08480 () | 1735386..1735541 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| HO394_RS08485 () | 1735613..1735900 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| HO394_RS08490 () | 1735900..1736139 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| HO394_RS08495 () | 1736164..1736469 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| HO394_RS08500 () | 1736672..1737004 | + | 333 | WP_001301033.1 | protein FlxA | - |
| HO394_RS08505 () | 1737441..1737590 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| HO394_RS08510 () | 1737625..1737903 | - | 279 | Protein_1664 | hypothetical protein | - |
| HO394_RS08515 () | 1737887..1738117 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| HO394_RS08520 () | 1738201..1738608 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| HO394_RS08525 () | 1738775..1738930 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| HO394_RS08530 () | 1739090..1739308 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| HO394_RS08535 () | 1739312..1739476 | - | 165 | WP_014639039.1 | hypothetical protein | - |
| HO394_RS08540 () | 1739876..1740064 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| HO394_RS08545 () | 1740061..1740252 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| HO394_RS08550 () | 1740345..1741112 | + | 768 | Protein_1672 | exonuclease | - |
| HO394_RS08555 () | 1741109..1741804 | + | 696 | Protein_1673 | IS3-like element IS2 family transposase | - |
| HO394_RS08560 () | 1741818..1742123 | + | 306 | Protein_1674 | DUF3596 domain-containing protein | - |
| HO394_RS08570 () | 1743454..1744311 | + | 858 | Protein_1676 | site-specific integrase | - |
| HO394_RS08575 () | 1744331..1744441 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| HO394_RS08580 () | 1744499..1745518 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| HO394_RS08585 () | 1745530..1746744 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| HO394_RS08590 () | 1746950..1747276 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| HO394_RS08595 () | 1747411..1747752 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| HO394_RS08600 () | 1747787..1748347 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| HO394_RS08605 () | 1748350..1749060 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |