MGE detailed information
MGE type: Genomic_island MGE length: 14217 bp
Accession: NZ_CP053600 Location: 1537833..1552049 Organism: Escherichia coli strain Nico21(DE3) Replicon: chromosome
Accession: NZ_CP053600 Location: 1537833..1552049 Organism: Escherichia coli strain Nico21(DE3) Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO398_RS07550 () | 1534648..1536333 | - | 1686 | WP_000628583.1 | ABC transporter ATP-binding protein/permease | - |
| HO398_RS07555 () | 1536536..1536658 | + | 123 | WP_120795387.1 | protein YneP | - |
| HO398_RS07560 () | 1536624..1537781 | - | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| HO398_RS07565 () | 1537833..1539515 | - | 1683 | WP_001318307.1 | sulfatase | - |
| HO398_RS07570 () | 1539917..1540678 | - | 762 | WP_000060493.1 | acid stress response transcriptional regulator YdeO | - |
| HO398_RS07575 () | 1540753..1540950 | - | 198 | WP_000543384.1 | two-component system connector SafA | - |
| HO398_RS07580 () | 1541198..1543477 | - | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| HO398_RS07585 () | 1543811..1544725 | - | 915 | WP_000520676.1 | Type 1 fimbrin D-mannose specific adhesin | VF |
| HO398_RS07590 () | 1544784..1545287 | - | 504 | WP_000825452.1 | Protein FimG | VF |
| HO398_RS07595 () | 1545300..1545830 | - | 531 | WP_000876763.1 | Protein FimF | VF |
| HO398_RS22055 () | 1545844..1548494 | - | 2651 | Protein_1489 | fimbrial biogenesis outer membrane usher protein | - |
| HO398_RS07615 () | 1548536..1549246 | - | 711 | Protein_1490 | Chaperone protein FocC | VF |
| HO398_RS07620 () | 1549607..1550089 | - | 483 | WP_000931227.1 | Type-1 fimbrial protein, A chain | VF |
| HO398_RS07625 () | 1550461..1551783 | - | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| HO398_RS07630 () | 1551783..1552049 | - | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| HO398_RS07635 () | 1552272..1553852 | - | 1581 | Protein_1494 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| HO398_RS07640 () | 1553848..1554624 | + | 777 | Protein_1495 | histidine kinase | - |
| HO398_RS07645 () | 1554636..1555658 | + | 1023 | WP_000172488.1 | autoinducer 2 ABC transporter substrate-binding protein LsrB | - |
| HO398_RS07650 () | 1555685..1556560 | + | 876 | WP_000774188.1 | 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase | - |
| HO398_RS07655 () | 1556584..1556874 | + | 291 | WP_000558527.1 | (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.009 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.009 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.007 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.009 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.009 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.009 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.009 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.009 |