MGE detailed information
MGE type: Prophage MGE length: 12066 bp
Accession: NZ_CP053600 Location: 1398678..1410743 Organism: Escherichia coli strain Nico21(DE3) Replicon: chromosome
Accession: NZ_CP053600 Location: 1398678..1410743 Organism: Escherichia coli strain Nico21(DE3) Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO398_RS06885 () | 1394728..1395711 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| HO398_RS06890 () | 1396189..1397562 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| HO398_RS06895 () | 1397691..1398626 | - | 936 | WP_001157407.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| HO398_RS06900 () | 1398678..1399913 | - | 1236 | WP_000040858.1 | Putative defective protein IntQ ; Integrase | Integrase |
| HO398_RS06905 () | 1399915..1400130 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| HO398_RS06910 () | 1400209..1400418 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1400234..1400412 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1400234..1400412 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1400234..1400412 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1400234..1400412 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| HO398_RS06915 () | 1400411..1400605 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| HO398_RS06920 () | 1400662..1401471 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| HO398_RS06925 () | 1401464..1402563 | - | 1100 | Protein_1353 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| HO398_RS06930 () | 1402665..1402940 | - | 276 | WP_000632297.1 | protein RacC | - |
| HO398_RS06935 () | 1403015..1403185 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| HO398_RS06940 () | 1403185..1403406 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| HO398_RS06945 () | 1403848..1404336 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| HO398_RS06950 () | 1404333..1404488 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| HO398_RS06955 () | 1404632..1404844 | + | 213 | WP_012775985.1 | phage lysis protein EssD | - |
| HO398_RS06960 () | 1404849..1405193 | + | 345 | WP_000193293.1 | YdfR family protein | - |
| HO398_RS06965 () | 1405159..1405431 | - | 273 | WP_000370546.1 | hypothetical protein | - |
| HO398_RS06970 () | 1405537..1406070 | + | 534 | WP_000992105.1 | lysozyme | - |
| HO398_RS06975 () | 1406287..1406472 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| HO398_RS06980 () | 1406669..1408126 | + | 1458 | WP_001097897.1 | Trk system potassium transporter TrkG | - |
| HO398_RS06985 () | 1408264..1408659 | + | 396 | WP_012775984.1 | ParB/Srx family N-terminal domain-containing protein | - |
| HO398_RS06990 () | 1408631..1409344 | + | 714 | Protein_1366 | hypothetical protein | - |
| HO398_RS06995 () | 1409341..1409619 | + | 279 | WP_000654171.1 | hypothetical protein | - |
| HO398_RS07000 () | 1409632..1409925 | + | 294 | WP_000355360.1 | hypothetical protein | - |
| HO398_RS07005 () | 1409945..1410055 | + | 111 | Protein_1369 | tail fiber assembly protein | - |
| HO398_RS07010 () | 1410153..1410743 | - | 591 | WP_000078178.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| HO398_RS07015 () | 1411060..1411293 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| HO398_RS07020 () | 1411362..1411475 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| HO398_RS07025 () | 1411815..1411988 | + | 174 | WP_001157925.1 | hypothetical protein | - |
| HO398_RS07030 () | 1412254..1412688 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| HO398_RS07035 () | 1412829..1413962 | - | 1134 | WP_000837924.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli strain BL21 (TaKaRa) | Prophage | TA52902 | NZ_CP010816 | 1366333..1378398 | 0 |