MGE detailed information
MGE type: Prophage MGE length: 48484 bp
Accession: NZ_CP052853 Location: 474721..523204 Organism: Xylella fastidiosa subsp. multiplex strain RH1 Replicon: chromosome
Accession: NZ_CP052853 Location: 474721..523204 Organism: Xylella fastidiosa subsp. multiplex strain RH1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HKJ33_RS01960 () | 470224..470883 | - | 660 | WP_004085204.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| HKJ33_RS01965 () | 470980..472896 | - | 1917 | WP_004085203.1 | phosphogluconate dehydratase | - |
| HKJ33_RS01970 () | 472995..473714 | - | 720 | WP_004085202.1 | 6-phosphogluconolactonase | - |
| HKJ33_RS01975 () | 473711..474724 | - | 1014 | WP_004085201.1 | glucokinase | - |
| HKJ33_RS01980 () | 474721..476154 | - | 1434 | WP_021358465.1 | glucose-6-phosphate dehydrogenase | - |
| HKJ33_RS01985 () | 476483..477577 | + | 1095 | WP_012337631.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HKJ33_RS01990 () | 477722..478525 | - | 804 | WP_004085198.1 | folate-binding protein YgfZ | - |
| HKJ33_RS01995 () | 478838..479056 | + | 219 | WP_004085343.1 | DUF1674 domain-containing protein | - |
| HKJ33_RS02000 () | 479114..479536 | + | 423 | WP_021358463.1 | succinate dehydrogenase, cytochrome b556 subunit | - |
| HKJ33_RS02005 () | 479533..479916 | + | 384 | WP_004085197.1 | succinate dehydrogenase, hydrophobic membrane anchor protein | - |
| HKJ33_RS02010 () | 479924..481714 | + | 1791 | WP_169709921.1 | succinate dehydrogenase flavoprotein subunit | - |
| HKJ33_RS02015 () | 481735..482520 | + | 786 | WP_004085195.1 | succinate dehydrogenase iron-sulfur subunit | - |
| HKJ33_RS02020 () | 482641..482889 | + | 249 | WP_004085194.1 | succinate dehydrogenase assembly factor 2 | - |
| HKJ33_RS02025 () | 482912..483292 | + | 381 | WP_012337633.1 | hypothetical protein | - |
| HKJ33_RS02030 () | 483318..484559 | + | 1242 | WP_004085192.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| HKJ33_RS02035 () | 484552..485274 | + | 723 | WP_004085191.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HKJ33_RS02040 () | 485622..488099 | + | 2478 | WP_012337634.1 | DNA internalization-related competence protein ComEC/Rec2 | - |
| HKJ33_RS02045 () | 488084..488746 | + | 663 | WP_004085189.1 | MotA/TolQ/ExbB proton channel family protein | - |
| HKJ33_RS02050 () | 488751..489188 | + | 438 | WP_004089267.1 | biopolymer transporter ExbD | - |
| HKJ33_RS02055 () | 489206..490954 | + | 1749 | WP_004085187.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HKJ33_RS02060 () | 490951..491970 | + | 1020 | WP_004085186.1 | Tetraacyldisaccharide 4'-kinase | VF |
| HKJ33_RS02065 () | 492345..493427 | - | 1083 | WP_012337635.1 | phage late control D family protein | - |
| HKJ33_RS02070 () | 493418..493636 | - | 219 | WP_004085341.1 | tail protein X | - |
| HKJ33_RS02075 () | 493633..494115 | - | 483 | WP_169709922.1 | phage tail protein | - |
| HKJ33_RS02080 () | 494112..496329 | - | 2218 | Protein_395 | phage tail tape measure protein | - |
| HKJ33_RS02085 () | 496456..496743 | - | 288 | WP_012337638.1 | phage tail assembly protein | - |
| HKJ33_RS02090 () | 496746..497255 | - | 510 | WP_128283754.1 | phage major tail tube protein | - |
| HKJ33_RS02095 () | 497255..498433 | - | 1179 | WP_154436952.1 | phage tail sheath family protein | - |
| HKJ33_RS02100 () | 498497..500089 | - | 1593 | WP_169709923.1 | tail fiber domain-containing protein | - |
| HKJ33_RS02105 () | 500097..500654 | - | 558 | WP_004086970.1 | phage tail protein I | - |
| HKJ33_RS02110 () | 500647..501540 | - | 894 | WP_004085178.1 | baseplate J/gp47 family protein | - |
| HKJ33_RS02115 () | 501540..501878 | - | 339 | WP_004088650.1 | GPW/gp25 family protein | - |
| HKJ33_RS02120 () | 502028..502291 | + | 264 | WP_004086967.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| HKJ33_RS02125 () | 502278..502559 | + | 282 | WP_004086966.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| HKJ33_RS02130 () | 502596..503183 | - | 588 | WP_128283746.1 | phage baseplate assembly protein V | - |
| HKJ33_RS02135 () | 503180..503722 | - | 543 | WP_154436958.1 | hypothetical protein | - |
| HKJ33_RS02140 () | 503698..504219 | - | 522 | WP_154436960.1 | hypothetical protein | - |
| HKJ33_RS02145 () | 504216..504539 | - | 324 | WP_169709908.1 | hypothetical protein | - |
| HKJ33_RS02150 () | 504539..504799 | - | 261 | WP_012337650.1 | hypothetical protein | - |
| HKJ33_RS02155 () | 504817..506691 | - | 1875 | WP_154436964.1 | phage major capsid protein | - |
| HKJ33_RS02160 () | 506688..508274 | - | 1587 | WP_154436966.1 | phage portal protein | - |
| HKJ33_RS02165 () | 508271..508819 | - | 549 | WP_012337653.1 | hypothetical protein | - |
| HKJ33_RS02170 () | 508823..510774 | - | 1952 | Protein_413 | phage terminase large subunit family protein | - |
| HKJ33_RS02175 () | 510767..511342 | - | 576 | WP_012337655.1 | terminase small subunit | - |
| HKJ33_RS02180 () | 511473..511697 | - | 225 | WP_012337656.1 | hypothetical protein | - |
| HKJ33_RS02185 () | 511699..512160 | - | 462 | WP_169709924.1 | hypothetical protein | - |
| HKJ33_RS02190 () | 512150..512479 | - | 330 | WP_004085022.1 | phage holin family protein | - |
| HKJ33_RS02195 () | 512472..512972 | - | 501 | WP_128382956.1 | lysozyme | - |
| HKJ33_RS02200 () | 513072..513803 | - | 732 | WP_169709925.1 | site-specific DNA-methyltransferase | - |
| HKJ33_RS02205 () | 513993..514328 | - | 336 | WP_004085025.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| HKJ33_RS02210 () | 514325..514579 | - | 255 | WP_004089517.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| HKJ33_RS02215 () | 514632..515354 | - | 723 | WP_012337661.1 | hypothetical protein | - |
| HKJ33_RS12245 () | 516501..517100 | + | 600 | WP_162008660.1 | hypothetical protein | - |
| HKJ33_RS02225 () | 517097..517375 | + | 279 | WP_038230497.1 | VRR-NUC domain-containing protein | - |
| HKJ33_RS02230 () | 517377..517781 | - | 405 | WP_004085029.1 | hypothetical protein | - |
| HKJ33_RS02235 () | 517866..519284 | + | 1419 | WP_169709926.1 | DEAD/DEAH box helicase | - |
| HKJ33_RS02240 () | 519281..519445 | + | 165 | WP_004086189.1 | hypothetical protein | - |
| HKJ33_RS02245 () | 519438..519686 | + | 249 | WP_004086191.1 | DUF4224 domain-containing protein | - |
| HKJ33_RS02250 () | 519686..520705 | + | 1020 | WP_169709927.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HKJ33_RS02255 () | 521482..522123 | + | 642 | WP_004085684.1 | Chromosome-partitioning ATPase Soj | VF |
| HKJ33_RS02260 () | 522151..522627 | + | 477 | WP_004085683.1 | histidine phosphatase family protein | - |
| HKJ33_RS02265 () | 522632..523204 | + | 573 | WP_004085682.1 | YceI family protein | - |
| HKJ33_RS02270 () | 523201..525159 | + | 1959 | WP_038231298.1 | phospholipase D family protein | - |
| HKJ33_RS02275 () | 526144..526536 | - | 393 | WP_071869548.1 | helix-turn-helix domain-containing protein | - |
| HKJ33_RS02280 () | 526870..527118 | + | 249 | WP_154128479.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|