MGE detailed information
MGE type: Conjugative plasmid MGE length: 103780 bp
Accession: NZ_CP051726 Location: 1..103780 Organism: Escherichia coli strain SCU-112 Replicon: plasmid pSCU-112-1
Accession: NZ_CP051726 Location: 1..103780 Organism: Escherichia coli strain SCU-112 Replicon: plasmid pSCU-112-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ29_RS24165 () | 1..978 | + | 978 | WP_001309253.1 | RepB family plasmid replication initiator protein | - |
| HHJ29_RS24170 () | 1221..1961 | - | 741 | WP_001066947.1 | IS91 family transposase ISMno23 | Transposase |
| HHJ29_RS24175 () | 2082..2270 | - | 189 | WP_001332784.1 | hypothetical protein | - |
| HHJ29_RS24180 () | 2637..3806 | + | 1170 | WP_001072358.1 | hypothetical protein | - |
| HHJ29_RS24185 () | 4032..4207 | - | 176 | Protein_4 | IS3 family transposase | - |
| HHJ29_RS24190 () | 4653..4925 | - | 273 | WP_001322642.1 | adhesin biosynthesis transcription regulatory family protein | - |
| HHJ29_RS24195 () | 5450..5886 | - | 437 | Protein_6 | IS3 family transposase IS2 | Transposase |
| HHJ29_RS24200 () | 5976..6455 | - | 480 | Protein_7 | IS3 family transposase IS629 | Transposase |
| HHJ29_RS24205 () | 6539..8047 | - | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| HHJ29_RS24210 () | 8720..9070 | - | 351 | Protein_9 | IS3 family transposase IS629 | Transposase |
| HHJ29_RS24215 () | 9156..10655 | + | 1500 | WP_000143800.1 | IS21 family transposase ISEc10 | Transposase |
| HHJ29_RS24220 () | 10652..11407 | + | 756 | WP_000065240.1 | IS21 family transposase ISEc10 | Transposase |
| HHJ29_RS24225 () | 11298..11875 | - | 578 | Protein_12 | IS3 family transposase IS629 | Transposase |
| HHJ29_RS24230 () | 11901..12206 | + | 306 | Protein_13 | IS91 family transposase ISSbo1 | Transposase |
| HHJ29_RS24235 () | 12729..13904 | - | 1176 | WP_001020413.1 | putative protein YncE | VF |
| HHJ29_RS24240 () | 13973..16234 | - | 2262 | WP_001100763.1 | TonB-dependent receptor | - |
| HHJ29_RS24245 () | 16403..17179 | - | 777 | WP_000981091.1 | energy transducer TonB | - |
| HHJ29_RS24250 () | 17187..18062 | - | 876 | WP_001537591.1 | ChaN family lipoprotein | - |
| HHJ29_RS24255 () | 18394..19080 | - | 687 | Protein_18 | replication initiation protein | - |
| HHJ29_RS24260 () | 20650..20868 | - | 219 | WP_001336934.1 | hypothetical protein | - |
| HHJ29_RS24265 () | 20997..21344 | + | 348 | WP_000142452.1 | hypothetical protein | - |
| HHJ29_RS24270 () | 21364..21873 | - | 510 | WP_000194542.1 | hypothetical protein | - |
| HHJ29_RS24275 () | 21870..22130 | - | 261 | WP_000371883.1 | hypothetical protein | - |
| HHJ29_RS24280 () | 22232..22971 | + | 740 | Protein_23 | IS3 family transposase IS629 | Transposase |
| HHJ29_RS24285 () | 23644..25152 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| HHJ29_RS24290 () | 25236..25715 | + | 480 | Protein_25 | IS3 family transposase IS629 | Transposase |
| HHJ29_RS24295 () | 25718..26287 | - | 570 | WP_001336919.1 | Serine protease EspC | VF |
| HHJ29_RS24300 () | 26389..27368 | + | 980 | Protein_27 | IS5 family transposase ISKpn26 | Transposase |
| HHJ29_RS24305 () | 27518..28150 | - | 633 | Protein_28 | histidine-type phosphatase | - |
| HHJ29_RS24310 () | 28272..28757 | - | 486 | WP_000874189.1 | hypothetical protein | - |
| HHJ29_RS24315 () | 28782..29267 | - | 486 | WP_001267176.1 | TlpA family protein disulfide reductase | - |
| HHJ29_RS24320 () | 29254..29949 | - | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| HHJ29_RS24325 () | 29954..31084 | - | 1131 | WP_000729218.1 | ABC transporter permease | - |
| HHJ29_RS24330 () | 31074..32357 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
| HHJ29_RS24335 () | 32360..33739 | - | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| HHJ29_RS24340 () | 33843..34370 | - | 528 | WP_000178050.1 | iron transporter | - |
| HHJ29_RS24345 () | 34411..36297 | - | 1887 | WP_001332815.1 | FTR1 family iron permease | - |
| HHJ29_RS24350 () | 36644..37459 | - | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| HHJ29_RS24355 () | 37792..38496 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HHJ29_RS24360 () | 38548..39204 | + | 657 | Protein_39 | DeoR/GlpR transcriptional regulator | - |
| HHJ29_RS24365 () | 39225..40085 | - | 861 | WP_001620095.1 | Beta-lactamase SHV-1 | ARG |
| HHJ29_RS24370 () | 40383..40643 | + | 261 | WP_001620096.1 | hypothetical protein | - |
| HHJ29_RS24375 () | 40730..41818 | + | 1089 | WP_001620097.1 | AAA family ATPase | - |
| HHJ29_RS24380 () | 41849..42730 | - | 882 | Protein_43 | oligosaccharide MFS transporter | - |
| HHJ29_RS24385 () | 42791..43495 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HHJ29_RS24390 () | 43541..44110 | - | 570 | Protein_45 | nucleotidyltransferase domain-containing protein | - |
| HHJ29_RS24395 () | 44259..45272 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| HHJ29_RS24400 () | 45475..45825 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| HHJ29_RS24405 () | 45956..46240 | + | 285 | Protein_48 | recombinase family protein | - |
| HHJ29_RS24410 () | 46242..46586 | + | 345 | Protein_49 | MerR family DNA-binding protein | - |
| HHJ29_RS24415 () | 46693..47390 | - | 698 | Protein_50 | IS1 family transposase IS1R | Transposase |
| HHJ29_RS24420 () | 47419..48729 | - | 1311 | WP_001262765.1 | DUF262 domain-containing protein | - |
| HHJ29_RS24425 () | 49014..49415 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| HHJ29_RS24430 () | 49348..49605 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| HHJ29_RS24435 () | 49698..50351 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| HHJ29_RS24440 () | 50449..50589 | - | 141 | WP_001333237.1 | hypothetical protein | - |
| HHJ29_RS24445 () | 51290..52147 | - | 858 | WP_001537577.1 | incFII family plasmid replication initiator RepA | - |
| HHJ29_RS24450 () | 52140..52214 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| HHJ29_RS24455 () | 52448..52705 | - | 258 | WP_000084404.1 | replication regulatory protein RepA | - |
| HHJ29_RS24460 () | 52990..53139 | - | 150 | WP_001336447.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 53187..53243 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 53187..53243 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 53187..53243 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 53187..53243 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| HHJ29_RS24465 () | 53338..53775 | - | 438 | WP_000872609.1 | hypothetical protein | - |
| HHJ29_RS24470 () | 53928..54311 | - | 384 | WP_001109264.1 | hypothetical protein | - |
| HHJ29_RS24475 () | 54414..54875 | - | 462 | WP_000760080.1 | thermonuclease family protein | - |
| HHJ29_RS24480 () | 55628..55831 | - | 204 | WP_001336517.1 | hypothetical protein | - |
| HHJ29_RS24485 () | 55983..56540 | - | 558 | WP_000139329.1 | fertility inhibition protein FinO | - |
| HHJ29_RS24490 () | 56595..57341 | - | 747 | WP_000205709.1 | conjugal transfer pilus acetylase TraX | - |
| HHJ29_RS24495 () | 57361..62631 | - | 5271 | WP_001545323.1 | Multifunctional conjugation protein TraI | Relaxase |
| HHJ29_RS24500 () | 62631..64085 | - | 1455 | Protein_67 | Coupling protein TraD | VF |
| HHJ29_RS24505 () | 64151..64855 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HHJ29_RS24510 () | 64908..66059 | - | 1152 | Protein_69 | conjugal transfer protein TraN | - |
| HHJ29_RS24515 () | 66056..66478 | - | 423 | WP_001229309.1 | HNH endonuclease | - |
| HHJ29_RS24520 () | 66503..66874 | - | 372 | WP_000174465.1 | hypothetical protein | - |
| HHJ29_RS24525 () | 66871..67509 | - | 639 | WP_000087539.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HHJ29_RS24530 () | 67536..68054 | - | 519 | WP_000009088.1 | hypothetical protein | - |
| HHJ29_RS24535 () | 68117..68425 | - | 309 | WP_000412445.1 | hypothetical protein | - |
| HHJ29_RS24540 () | 68452..69444 | - | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| HHJ29_RS24545 () | 69441..70073 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| HHJ29_RS24550 () | 70070..70456 | - | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| HHJ29_RS24555 () | 70453..73083 | - | 2631 | WP_000069771.1 | type IV secretion system protein TraC | - |
| HHJ29_RS24560 () | 73748..74221 | - | 474 | WP_000549566.1 | hypothetical protein | - |
| HHJ29_RS24565 () | 74214..74627 | - | 414 | WP_000549574.1 | hypothetical protein | - |
| HHJ29_RS24570 () | 74620..74841 | - | 222 | WP_001278695.1 | conjugal transfer protein TraR | - |
| HHJ29_RS24575 () | 74976..75491 | - | 516 | WP_000809872.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HHJ29_RS24580 () | 75491..75841 | - | 351 | WP_071586941.1 | conjugal transfer protein TrbD | - |
| HHJ29_RS24585 () | 75795..76382 | - | 588 | WP_001309238.1 | conjugal transfer protein TraP | - |
| HHJ29_RS24590 () | 76351..77802 | - | 1452 | WP_000146663.1 | conjugal transfer protein TraB | - |
| HHJ29_RS24595 () | 77802..78530 | - | 729 | WP_001230767.1 | type-F conjugative transfer system secretin TraK | - |
| HHJ29_RS24600 () | 78517..79083 | - | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| HHJ29_RS24605 () | 79105..79416 | - | 312 | WP_000012100.1 | type IV conjugative transfer system protein TraL | - |
| HHJ29_RS24610 () | 79431..79790 | - | 360 | WP_001099001.1 | type IV conjugative transfer system pilin TraA | - |
| HHJ29_RS24615 () | 79823..80218 | - | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| HHJ29_RS24620 () | 80317..81006 | - | 690 | WP_000283387.1 | conjugal transfer transcriptional regulator TraJ | - |
| HHJ29_RS24625 () | 81193..81576 | - | 384 | WP_001151538.1 | relaxosome protein TraM | - |
| HHJ29_RS24630 () | 81897..82499 | + | 603 | Protein_93 | hypothetical protein | VF |
| HHJ29_RS24635 () | 82796..83617 | - | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| HHJ29_RS24640 () | 83727..84023 | - | 297 | WP_001272251.1 | hypothetical protein | - |
| HHJ29_RS24650 () | 84415..84619 | + | 205 | Protein_96 | pilus protein | - |
| HHJ29_RS24655 () | 84920..85078 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 85122..85346 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 85122..85346 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 85122..85346 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 85122..85346 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| HHJ29_RS24660 () | 85158..85337 | + | 180 | WP_001309233.1 | hypothetical protein | - |
| HHJ29_RS24665 () | 85358..86077 | - | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| HHJ29_RS24670 () | 86074..86508 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| HHJ29_RS24675 () | 86577..88541 | - | 1965 | WP_001537566.1 | ParB/RepB/Spo0J family partition protein | - |
| HHJ29_RS24680 () | 88602..88835 | - | 234 | WP_000006003.1 | DUF905 family protein | - |
| HHJ29_RS24685 () | 88893..89420 | - | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| HHJ29_RS24690 () | 89722..90159 | + | 438 | WP_024185955.1 | hypothetical protein | - |
| HHJ29_RS24695 () | 90245..90808 | - | 564 | WP_001309257.1 | class I SAM-dependent methyltransferase | - |
| HHJ29_RS24700 () | 90855..92216 | - | 1362 | WP_001537564.1 | DUF3560 domain-containing protein | - |
| HHJ29_RS24705 () | 92268..92498 | - | 231 | WP_001537563.1 | hypothetical protein | - |
| HHJ29_RS24710 () | 93179..93487 | + | 309 | WP_050576143.1 | hypothetical protein | - |
| HHJ29_RS24715 () | 93466..93657 | - | 192 | WP_001027049.1 | hypothetical protein | - |
| HHJ29_RS24720 () | 93657..94076 | - | 420 | WP_000271761.1 | DUF1380 family protein | - |
| HHJ29_RS24725 () | 94123..94425 | - | 303 | WP_001364029.1 | antirestriction protein | - |
| HHJ29_RS24900 () | 94962..95732 | - | 771 | WP_001044390.1 | hypothetical protein | - |
| HHJ29_RS24740 () | 95777..96211 | - | 435 | WP_000274451.1 | DUF1380 family protein | - |
| HHJ29_RS24745 () | 96225..96446 | - | 222 | WP_001104892.1 | hypothetical protein | - |
| HHJ29_RS24750 () | 96447..97130 | - | 684 | WP_000086171.1 | DNA methylase | - |
| HHJ29_RS24755 () | 97206..97517 | - | 312 | WP_001309256.1 | hypothetical protein | - |
| HHJ29_RS24760 () | 97581..97940 | - | 360 | WP_001336695.1 | DUF1281 domain-containing protein | - |
| HHJ29_RS24765 () | 97947..98090 | - | 144 | WP_000270807.1 | DUF1281 domain-containing protein | - |
| HHJ29_RS24770 () | 98257..99033 | - | 777 | Protein_119 | hypothetical protein | - |
| HHJ29_RS24775 () | 99267..100229 | - | 963 | WP_000756328.1 | ParB/RepB/Spo0J family partition protein | - |
| HHJ29_RS24780 () | 100226..101431 | - | 1206 | WP_000817635.1 | Plasmid partition protein A | VF |
| HHJ29_RS24785 () | 102189..102440 | + | 252 | WP_001132895.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| HHJ29_RS24790 () | 102437..102724 | + | 288 | WP_001270422.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HHJ29_RS24795 () | 102726..103137 | + | 412 | Protein_124 | DDE-type integrase/transposase/recombinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|