MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 131292 bp
Accession: NZ_CP050813 Location: 1..131292 Organism: Yokenella regensburgei strain W13 Replicon: plasmid pYRW13-131
Accession: NZ_CP050813 Location: 1..131292 Organism: Yokenella regensburgei strain W13 Replicon: plasmid pYRW13-131
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HEC60_RS24685 () | 626..1314 | - | 689 | Protein_0 | IS21 family transposase ISAs29 | Transposase |
| HEC60_RS24690 () | 1378..2898 | - | 1521 | Protein_1 | IS21 family transposase ISAs29 | Transposase |
| HEC60_RS24695 () | 3389..4254 | + | 866 | Protein_2 | ISNCY family transposase ISKpn21 | Transposase |
| HEC60_RS24700 () | 4617..4979 | + | 363 | WP_167810227.1 | hypothetical protein | - |
| HEC60_RS24705 () | 5027..5368 | - | 342 | Protein_4 | IS4 family transposase ISSfl1 | Transposase |
| HEC60_RS24710 () | 5812..5949 | - | 138 | Protein_5 | IS3 family transposase | - |
| HEC60_RS24715 () | 5995..6189 | - | 195 | WP_167810228.1 | DnaJ domain-containing protein | - |
| HEC60_RS24720 () | 6715..8244 | + | 1530 | WP_167810229.1 | IS3 family transposase ISKpn38 | Transposase |
| HEC60_RS24725 () | 8401..8886 | - | 486 | WP_167810230.1 | GNAT family N-acetyltransferase | Toxin Detail |
| HEC60_RS24730 () | 8874..9140 | - | 267 | WP_167810231.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| HEC60_RS24735 () | 9341..10093 | - | 753 | WP_167810232.1 | AraC family transcriptional regulator | - |
| HEC60_RS24740 () | 10580..10732 | - | 153 | Protein_11 | IS3 family transposase | - |
| HEC60_RS24745 () | 10819..11556 | + | 738 | WP_167810233.1 | IS21 family transposase ISAs29 | Transposase |
| HEC60_RS24750 () | 11734..12438 | + | 705 | Protein_13 | IS6 family transposase | - |
| HEC60_RS24755 () | 12446..13342 | - | 897 | WP_167810234.1 | Tn3 family transposase ISPsy42 | Transposase |
| HEC60_RS24760 () | 13493..14074 | + | 582 | WP_167810235.1 | Tn3 family transposase TnpR_ISRsp12 | Transposase |
| HEC60_RS24770 () | 14287..14990 | - | 704 | Protein_16 | IS6 family transposase IS15DI | Transposase |
| HEC60_RS24775 () | 15220..15516 | + | 297 | WP_167810236.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| HEC60_RS24780 () | 15521..16846 | + | 1326 | WP_167810237.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| HEC60_RS24785 () | 16980..17683 | + | 704 | Protein_19 | IS6 family transposase IS15DI | Transposase |
| HEC60_RS24790 () | 17979..18632 | - | 654 | WP_167810238.1 | hypothetical protein | - |
| HEC60_RS24795 () | 19031..19982 | - | 952 | Protein_21 | hypothetical protein | VF |
| HEC60_RS24800 () | 20585..21193 | - | 609 | Protein_22 | fimbrial chaperone | - |
| HEC60_RS24805 () | 21247..23733 | - | 2487 | Protein_23 | fimbria/pilus outer membrane usher protein | - |
| HEC60_RS24810 () | 25288..25695 | - | 408 | Protein_24 | Tn3 family transposase | - |
| HEC60_RS24815 () | 25764..27022 | - | 1259 | Protein_25 | group II intron reverse transcriptase/maturase | - |
| HEC60_RS24820 () | 27602..28192 | - | 591 | Protein_26 | Tn3 family transposase ISPsy42 | Transposase |
| HEC60_RS24830 () | 28623..29245 | + | 623 | Protein_27 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HEC60_RS24835 () | 29407..29772 | + | 366 | WP_167810239.1 | hypothetical protein | - |
| HEC60_RS24840 () | 30012..30620 | + | 609 | WP_167810240.1 | CPBP family intramembrane metalloprotease | - |
| HEC60_RS24845 () | 30703..31956 | + | 1254 | WP_167810308.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| HEC60_RS24850 () | 31956..32303 | + | 348 | Protein_31 | peptidase domain-containing ABC transporter | - |
| HEC60_RS24855 () | 32281..32913 | - | 633 | WP_167810241.1 | Tn3 family transposase ISPsy42 | Transposase |
| HEC60_RS24860 () | 33063..33641 | + | 579 | WP_167810242.1 | Tn3 family transposase TnpR_ISRsp12 | Transposase |
| HEC60_RS24865 () | 33644..33946 | + | 303 | WP_167810243.1 | cytoplasmic protein | - |
| HEC60_RS24870 () | 33952..34314 | + | 363 | WP_167810244.1 | hypothetical protein | - |
| HEC60_RS24875 () | 34343..34615 | + | 273 | WP_167810245.1 | arylsulfatase regulator | - |
| HEC60_RS24880 () | 35191..36444 | + | 1254 | Protein_37 | group II intron reverse transcriptase/maturase | - |
| HEC60_RS24885 () | 36641..37348 | - | 708 | WP_167810246.1 | EAL domain-containing protein | - |
| HEC60_RS24890 () | 37498..38157 | - | 660 | WP_167810247.1 | hypothetical protein | VF |
| HEC60_RS24895 () | 38368..38985 | - | 618 | WP_167810248.1 | ParB/RepB/Spo0J family partition protein | - |
| HEC60_RS24900 () | 38982..40202 | - | 1221 | WP_167810249.1 | DUF3440 domain-containing protein | - |
| HEC60_RS24905 () | 40293..41518 | - | 1226 | Protein_42 | IS3 family transposase | - |
| HEC60_RS24910 () | 42665..42844 | + | 180 | WP_167810250.1 | hypothetical protein | - |
| HEC60_RS24915 () | 43023..45515 | + | 2493 | Protein_44 | fimbria/pilus outer membrane usher protein | - |
| HEC60_RS24920 () | 45481..46187 | + | 707 | Protein_45 | fimbrial chaperone | - |
| HEC60_RS24925 () | 46236..46649 | + | 414 | WP_167810251.1 | fimbrial protein | - |
| HEC60_RS24930 () | 46788..47740 | + | 953 | Protein_47 | transposase | - |
| HEC60_RS24935 () | 47777..48751 | + | 975 | WP_167810252.1 | hypothetical protein | - |
| HEC60_RS24940 () | 48880..49397 | - | 518 | Protein_49 | IS3 family transposase ISEam1 | Transposase |
| HEC60_RS24945 () | 49835..50083 | + | 249 | WP_167810253.1 | Protein PrgI | VF |
| HEC60_RS25495 () | 50377..50463 | - | 87 | Protein_51 | AAA family ATPase | - |
| HEC60_RS24955 () | 50430..50645 | - | 216 | Protein_52 | IS21 family transposase | - |
| HEC60_RS24960 () | 50905..52140 | + | 1236 | WP_167810254.1 | hypothetical protein | VF |
| HEC60_RS24965 () | 52152..53061 | - | 910 | Protein_54 | IS256 family transposase | - |
| HEC60_RS24970 () | 53263..53627 | + | 365 | Protein_55 | IS3 family transposase IS1351 | Transposase |
| HEC60_RS24975 () | 53853..54113 | + | 261 | WP_167810255.1 | IS3 family transposase ISBcen15 | Transposase |
| HEC60_RS24980 () | 54412..55401 | - | 990 | WP_167810256.1 | Cell invasion protein SipD | VF |
| HEC60_RS24985 () | 55506..56576 | - | 1071 | WP_167810257.1 | Invasin IpaC | VF |
| HEC60_RS24990 () | 56592..58274 | - | 1683 | WP_167810258.1 | Cell invasion protein SipB | VF |
| HEC60_RS24995 () | 58292..58777 | - | 486 | WP_167810309.1 | Chaperone protein SicA | VF |
| HEC60_RS25000 () | 58899..59978 | - | 1080 | WP_167810259.1 | Surface presentation of antigens protein SpaS | VF |
| HEC60_RS25005 () | 59980..60756 | - | 777 | WP_167810260.1 | Surface presentation of antigens protein SpaR | VF |
| HEC60_RS25010 () | 60760..61020 | - | 261 | WP_167810261.1 | hypothetical protein | VF |
| HEC60_RS25015 () | 61045..61713 | - | 669 | WP_167810262.1 | Surface presentation of antigens protein SpaP | VF |
| HEC60_RS25020 () | 61703..62605 | - | 903 | WP_167810263.1 | Surface presentation of antigens protein SpaO | VF |
| HEC60_RS25025 () | 62605..62832 | - | 228 | WP_167810264.1 | hypothetical protein | VF |
| HEC60_RS25030 () | 66094..66552 | - | 459 | WP_167810265.1 | hypothetical protein | VF |
| HEC60_RS25035 () | 66536..67825 | - | 1290 | WP_167810266.1 | putative ATP synthase SpaL | VF |
| HEC60_RS25040 () | 67920..69983 | - | 2064 | WP_167810267.1 | Invasion protein InvA | VF |
| HEC60_RS25045 () | 69986..71140 | - | 1155 | WP_167810268.1 | Protein MxiC | VF |
| HEC60_RS25050 () | 71130..72872 | - | 1743 | WP_167810269.1 | Protein InvG | VF |
| HEC60_RS25055 () | 72869..73789 | - | 921 | WP_167810270.1 | Invasion protein InvF | VF |
| HEC60_RS25060 () | 73815..74714 | - | 900 | Protein_73 | IS630 family transposase | - |
| HEC60_RS25065 () | 75353..75637 | + | 285 | WP_167810271.1 | hypothetical protein | VF |
| HEC60_RS25070 () | 75851..77197 | + | 1347 | WP_167810272.1 | hypothetical protein | - |
| HEC60_RS25075 () | 77242..77406 | + | 165 | Protein_76 | transcriptional regulator | - |
| HEC60_RS25080 () | 77521..77811 | - | 291 | WP_167810273.1 | hypothetical protein | - |
| HEC60_RS25085 () | 78098..79202 | + | 1105 | Protein_78 | IS3 family transposase | - |
| HEC60_RS25090 () | 79245..79328 | + | 84 | Protein_79 | site-specific integrase | - |
| HEC60_RS25095 () | 79419..79676 | + | 258 | Protein_80 | IS3 family transposase ISLad1 | Transposase |
| HEC60_RS25100 () | 79990..80199 | - | 210 | Protein_81 | IS30 family transposase IS30H | Transposase |
| HEC60_RS25105 () | 80316..80408 | + | 93 | Protein_82 | IS3 family transposase | - |
| HEC60_RS25110 () | 80474..80593 | + | 120 | WP_167810275.1 | hypothetical protein | - |
| HEC60_RS25115 () | 80565..81071 | - | 507 | WP_167810310.1 | hypothetical protein | VF |
| HEC60_RS25120 () | 81172..81957 | - | 786 | WP_167810276.1 | winged helix-turn-helix domain-containing protein | - |
| HEC60_RS25125 () | 82039..82413 | - | 375 | WP_167810277.1 | LysR family transcriptional regulator | - |
| HEC60_RS25130 () | 82780..83288 | + | 509 | Protein_87 | IS3 family transposase ISRaq1 | Transposase |
| HEC60_RS25135 () | 83344..83723 | - | 380 | Protein_88 | IS3 family transposase ISEal1 | Transposase |
| HEC60_RS25140 () | 84295..84843 | - | 549 | WP_167810278.1 | hypothetical protein | VF |
| HEC60_RS25145 () | 86158..86535 | - | 378 | WP_167810226.1 | hypothetical protein | - |
| HEC60_RS25150 () | 86469..89323 | - | 2855 | Protein_91 | Invasin | VF |
| HEC60_RS25155 () | 89818..91794 | - | 1977 | WP_167810279.1 | hypothetical protein | - |
| HEC60_RS25160 () | 92095..92338 | - | 244 | Protein_93 | IS66 family transposase ISEcl6 | Transposase |
| HEC60_RS25165 () | 92478..92723 | - | 246 | WP_167810280.1 | IS66 family transposase ISEc8 | Transposase |
| HEC60_RS25170 () | 93342..94175 | - | 834 | WP_167810281.1 | helix-turn-helix domain-containing protein | - |
| HEC60_RS25175 () | 94558..94766 | + | 209 | Protein_96 | IS3 family transposase IS1351 | Transposase |
| HEC60_RS25180 () | 94790..96015 | - | 1226 | Protein_97 | IS3 family transposase ISEc36 | Transposase |
| HEC60_RS25185 () | 96129..97271 | - | 1143 | Protein_98 | IS3 family transposase | - |
| HEC60_RS25190 () | 97421..97726 | + | 306 | Protein_99 | transposase | - |
| HEC60_RS25195 () | 98198..98389 | - | 192 | WP_167810282.1 | hypothetical protein | - |
| HEC60_RS25200 () | 98544..99443 | - | 900 | WP_167810283.1 | glycosyltransferase | - |
| HEC60_RS25205 () | 99599..100291 | - | 693 | WP_167810284.1 | Oxygen-regulated invasion protein OrgB | VF |
| HEC60_RS25210 () | 100248..100820 | - | 573 | WP_167810285.1 | Oxygen-regulated invasion protein OrgA | VF |
| HEC60_RS25215 () | 100813..101559 | - | 747 | WP_167810286.1 | Lipoprotein PrgK | VF |
| HEC60_RS25220 () | 101556..101852 | - | 297 | WP_167810287.1 | hypothetical protein | VF |
| HEC60_RS25225 () | 102135..103301 | - | 1167 | WP_167810288.1 | Protein PrgH | VF |
| HEC60_RS25230 () | 103654..103842 | + | 189 | Protein_107 | IS3 family transposase ISEam1 | Transposase |
| HEC60_RS25235 () | 103916..105090 | + | 1175 | Protein_108 | IS3 family transposase | - |
| HEC60_RS25240 () | 105178..105582 | + | 405 | WP_167810289.1 | IS21 family transposase ISAs29 | Transposase |
| HEC60_RS25245 () | 105775..106463 | + | 689 | Protein_110 | IS21 family transposase ISAs29 | Transposase |
| HEC60_RS25250 () | 106519..106812 | - | 294 | Protein_111 | GNAT family N-acetyltransferase | - |
| HEC60_RS25255 () | 107084..108061 | - | 978 | WP_209319620.1 | RepB family plasmid replication initiator protein | - |
| HEC60_RS25260 () | 108776..109942 | + | 1167 | WP_167810291.1 | plasmid-partitioning protein SopA | - |
| HEC60_RS25265 () | 109942..110901 | + | 960 | WP_167810292.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| HEC60_RS25270 () | 112179..112373 | + | 195 | WP_167810293.1 | IS3 family transposase ISYpe1 | Transposase |
| HEC60_RS25275 () | 112423..113414 | + | 992 | Protein_116 | Outer membrane protein IcsA autotransporter | VF |
| HEC60_RS25280 () | 113418..114590 | - | 1173 | Protein_117 | IS3 family transposase | - |
| HEC60_RS25285 () | 114614..114883 | + | 270 | WP_167810294.1 | plasmid SOS inhibition protein A | - |
| HEC60_RS25290 () | 114880..115110 | + | 231 | WP_167810295.1 | hypothetical protein | - |
| HEC60_RS25295 () | 115381..115542 | + | 162 | WP_161618205.1 | type I toxin-antitoxin system Hok family toxin | - |
| HEC60_RS25300 () | 116298..116585 | + | 288 | WP_167810296.1 | hypothetical protein | - |
| HEC60_RS25305 () | 116608..117024 | + | 417 | Protein_122 | DUF932 domain-containing protein | - |
| HEC60_RS25315 () | 117958..118335 | + | 378 | WP_167810311.1 | DUF932 domain-containing protein | - |
| HEC60_RS25320 () | 118386..118916 | - | 531 | WP_167810298.1 | hypothetical protein | VF |
| HEC60_RS25325 () | 119496..119889 | + | 394 | Protein_126 | conjugal transfer protein | - |
| HEC60_RS25330 () | 119927..120562 | - | 636 | WP_167810299.1 | Arc family DNA-binding protein | - |
| HEC60_RS25335 () | 120762..121133 | + | 372 | WP_167810300.1 | conjugal transfer protein TraA | - |
| HEC60_RS25340 () | 121136..121438 | + | 303 | WP_167810301.1 | type IV conjugative transfer system protein TraL | - |
| HEC60_RS25345 () | 121444..122022 | + | 579 | WP_167810302.1 | conjugal transfer protein TraE | - |
| HEC60_RS25350 () | 122037..122783 | + | 747 | WP_167810303.1 | type-F conjugative transfer system secretin TraK | - |
| HEC60_RS25355 () | 122780..124030 | + | 1251 | WP_167810304.1 | conjugal transfer protein TraB | - |
| HEC60_RS25360 () | 124344..125567 | - | 1224 | Protein_133 | IS3 family transposase ISEc36 | Transposase |
| HEC60_RS25365 () | 125767..126534 | + | 768 | WP_167810305.1 | hypothetical protein | - |
| HEC60_RS25370 () | 126640..126762 | + | 123 | Protein_135 | IS4 family transposase ISEc60 | Transposase |
| HEC60_RS25375 () | 127271..128704 | + | 1434 | WP_167810306.1 | DNA cytosine methyltransferase | - |
| HEC60_RS25380 () | 128748..129947 | - | 1200 | WP_167810307.1 | type II restriction endonuclease | - |
| HEC60_RS25385 () | 130403..130923 | + | 521 | Protein_138 | type IV secretion system DNA-binding domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|