MGE detailed information
MGE type: Conjugative plasmid MGE length: 107449 bp
Accession: NZ_CP050647 Location: 1..107449 Organism: Escherichia coli strain PapM-36-2 Replicon: plasmid pIncFIB
Accession: NZ_CP050647 Location: 1..107449 Organism: Escherichia coli strain PapM-36-2 Replicon: plasmid pIncFIB
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6008_RS22600 () | 1..978 | + | 978 | WP_039520203.1 | RepB family plasmid replication initiator protein | - |
| G6008_RS22605 () | 1263..2003 | - | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| G6008_RS22610 () | 2124..2309 | - | 186 | Protein_2 | hypothetical protein | - |
| G6008_RS22615 () | 2369..3199 | - | 831 | WP_167778845.1 | AraC family transcriptional regulator | - |
| G6008_RS22620 () | 3477..4253 | - | 777 | WP_167778846.1 | CFA/I fimbrial subunit D | VF |
| G6008_RS22625 () | 4543..5142 | + | 600 | WP_115431765.1 | S-fimbrial protein subunit SfaA | VF |
| G6008_RS22630 () | 5211..5915 | + | 705 | WP_167778847.1 | molecular chaperone | - |
| G6008_RS22635 () | 5896..6339 | + | 444 | WP_167778848.1 | fimbria/pilus periplasmic chaperone | - |
| G6008_RS22640 () | 6368..8875 | + | 2508 | WP_167778849.1 | Outer membrane usher protein FimD | VF |
| G6008_RS22645 () | 8866..9552 | + | 687 | WP_097427459.1 | molecular chaperone | - |
| G6008_RS22650 () | 9564..10058 | + | 495 | WP_157920038.1 | type 1 fimbrial protein | - |
| G6008_RS22655 () | 10072..11355 | + | 1284 | WP_167778850.1 | hypothetical protein | - |
| G6008_RS22660 () | 11475..12156 | - | 682 | Protein_12 | transposase | - |
| G6008_RS22665 () | 12697..13488 | - | 792 | WP_089584452.1 | alpha/beta hydrolase | - |
| G6008_RS22670 () | 13867..14625 | + | 759 | WP_073534291.1 | hypothetical protein | VF |
| G6008_RS22675 () | 15347..15727 | + | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| G6008_RS22680 () | 15724..16071 | + | 348 | WP_167778851.1 | IS66 family transposase ISEc8 | Transposase |
| G6008_RS22685 () | 16121..17653 | + | 1533 | WP_167778852.1 | IS66 family transposase ISEc8 | Transposase |
| G6008_RS22690 () | 17788..18210 | + | 423 | Protein_18 | IS21 family transposase IS100kyp | Transposase |
| G6008_RS22695 () | 18343..18528 | + | 186 | Protein_19 | IS3 family transposase IS2 | Transposase |
| G6008_RS22700 () | 18810..19997 | + | 1188 | WP_115431746.1 | peptide antibiotic transporter SbmA | - |
| G6008_RS22705 () | 20602..21510 | + | 909 | WP_089584414.1 | DMT family transporter | - |
| G6008_RS22710 () | 21863..22407 | + | 545 | Protein_22 | Alcohol dehydrogenase 2 | VF |
| G6008_RS22715 () | 22731..24069 | - | 1339 | Protein_23 | IS66 family transposase | - |
| G6008_RS22720 () | 24090..24254 | - | 165 | Protein_24 | IS66 family insertion sequence element accessory protein TnpB | - |
| G6008_RS22725 () | 24255..25345 | - | 1091 | Protein_25 | IS3 family transposase | - |
| G6008_RS22730 () | 25457..26073 | + | 617 | Protein_26 | Tyrosine recombinase XerC | VF |
| G6008_RS22735 () | 27028..28137 | + | 1110 | WP_073534277.1 | porin OmpC | - |
| G6008_RS22740 () | 28299..29066 | - | 768 | WP_089584417.1 | helix-turn-helix domain-containing protein | - |
| G6008_RS22745 () | 29488..29724 | - | 237 | WP_089584424.1 | hypothetical protein | - |
| G6008_RS22750 () | 30267..31670 | - | 1404 | WP_167778853.1 | ISKra4 family transposase ISEc51 | Transposase |
| G6008_RS22755 () | 31824..32414 | - | 591 | WP_167778854.1 | plasmid pRiA4b ORF-3 family protein | - |
| G6008_RS22760 () | 32507..32755 | + | 249 | Protein_32 | ATP-binding protein | - |
| G6008_RS22765 () | 32848..33093 | + | 246 | Protein_33 | IS91 family transposase | - |
| G6008_RS22770 () | 33677..37174 | + | 3498 | WP_167778855.1 | Outer membrane protein IcsA autotransporter | VF |
| G6008_RS22775 () | 37349..37554 | - | 206 | Protein_35 | transposase | - |
| G6008_RS22780 () | 37544..37747 | + | 204 | WP_167778856.1 | alkaline phosphatase | - |
| G6008_RS22785 () | 38035..38322 | - | 288 | WP_089584420.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| G6008_RS22790 () | 38319..38570 | - | 252 | WP_001139206.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| G6008_RS22795 () | 39524..40381 | - | 858 | WP_167778857.1 | incFII family plasmid replication initiator RepA | - |
| G6008_RS22800 () | 40374..40448 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| G6008_RS22805 () | 40695..40943 | - | 249 | WP_000083838.1 | replication regulatory protein RepA | - |
| G6008_RS22810 () | 41227..41433 | - | 207 | WP_001553767.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 41420..41481 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 41420..41481 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 41420..41481 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 41420..41481 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| G6008_RS22815 () | 42141..42602 | - | 462 | WP_089572206.1 | thermonuclease family protein | - |
| G6008_RS22820 () | 43346..43549 | - | 204 | WP_089571986.1 | hypothetical protein | - |
| G6008_RS22825 () | 43704..44261 | - | 558 | WP_000139319.1 | fertility inhibition protein FinO | - |
| G6008_RS22830 () | 44364..45224 | - | 861 | WP_000868986.1 | putative protein YcjY | VF |
| G6008_RS22835 () | 45283..46029 | - | 747 | WP_032285008.1 | conjugal transfer pilus acetylase TraX | - |
| G6008_RS22840 () | 46049..51319 | - | 5271 | WP_167778858.1 | Multifunctional conjugation protein TraI | Relaxase |
| G6008_RS22845 () | 51401..51628 | + | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| G6008_RS22850 () | 51628..52026 | + | 399 | WP_000911317.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| G6008_RS22855 () | 52035..54188 | - | 2154 | WP_000009350.1 | type IV conjugative transfer system coupling protein TraD | - |
| G6008_RS22860 () | 54441..55172 | - | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| G6008_RS22865 () | 55197..55718 | - | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| G6008_RS22870 () | 55751..58567 | - | 2817 | WP_167778859.1 | conjugal transfer mating pair stabilization protein TraG | - |
| G6008_RS22875 () | 58564..59937 | - | 1374 | WP_000944319.1 | conjugal transfer protein TraH | - |
| G6008_RS22880 () | 59924..60349 | - | 426 | WP_072034594.1 | F-type conjugal transfer protein TrbF | - |
| G6008_RS22885 () | 60303..60644 | - | 342 | WP_001442101.1 | P-type conjugative transfer protein TrbJ | - |
| G6008_RS22890 () | 60574..61119 | - | 546 | WP_000059833.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| G6008_RS22895 () | 61106..61390 | - | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| G6008_RS22900 () | 61748..62095 | - | 348 | WP_001287908.1 | conjugal transfer protein TrbA | - |
| G6008_RS22905 () | 62111..62854 | - | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| G6008_RS22910 () | 62847..63104 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| G6008_RS22915 () | 63131..64939 | - | 1809 | WP_000821840.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| G6008_RS22920 () | 64936..65574 | - | 639 | WP_167778873.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| G6008_RS22925 () | 65583..66575 | - | 993 | WP_167778860.1 | conjugal transfer pilus assembly protein TraU | - |
| G6008_RS22930 () | 66572..67204 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| G6008_RS22935 () | 67201..67587 | - | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| G6008_RS22940 () | 67584..70211 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| G6008_RS22945 () | 70371..70592 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| G6008_RS22950 () | 70727..71242 | - | 516 | WP_063610728.1 | type IV conjugative transfer system lipoprotein TraV | - |
| G6008_RS22955 () | 71239..71490 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| G6008_RS22960 () | 71483..71836 | - | 354 | WP_071594066.1 | conjugal transfer protein TrbD | - |
| G6008_RS22965 () | 71790..72380 | - | 591 | WP_000002787.1 | conjugal transfer protein TraP | - |
| G6008_RS22970 () | 72370..73797 | - | 1428 | WP_167778861.1 | conjugal transfer protein TraB | - |
| G6008_RS22975 () | 73797..74501 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| G6008_RS22980 () | 74512..75078 | - | 567 | WP_000399790.1 | type IV conjugative transfer system protein TraE | - |
| G6008_RS22985 () | 75100..75411 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| G6008_RS22990 () | 75426..75791 | - | 366 | WP_000340282.1 | type IV conjugative transfer system pilin TraA | - |
| G6008_RS22995 () | 75834..76049 | - | 216 | WP_001352842.1 | conjugal transfer relaxosome protein TraY | - |
| G6008_RS23000 () | 76185..76832 | - | 648 | WP_167778862.1 | conjugal transfer transcriptional regulator TraJ | - |
| G6008_RS23005 () | 77023..77406 | - | 384 | WP_001063020.1 | relaxosome protein TraM | - |
| G6008_RS23010 () | 77758..78348 | + | 591 | WP_167778863.1 | hypothetical protein | VF |
| G6008_RS23015 () | 78644..79464 | - | 821 | Protein_83 | DUF945 domain-containing protein | - |
| G6008_RS23020 () | 79583..79870 | - | 288 | WP_001523521.1 | hypothetical protein | - |
| G6008_RS23030 () | 80417..80575 | - | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | - |
| G6008_RS23035 () | 80647..81720 | + | 1074 | WP_167778864.1 | IS481 family transposase ISKpn28 | Transposase |
| - () | 81741..81935 | - | 195 | NuclAT_0 | - | - |
| - () | 81741..81935 | - | 195 | NuclAT_0 | - | - |
| - () | 81741..81935 | - | 195 | NuclAT_0 | - | - |
| - () | 81741..81935 | - | 195 | NuclAT_0 | - | - |
| G6008_RS23040 () | 81947..82666 | - | 720 | WP_167778865.1 | plasmid SOS inhibition protein A | - |
| G6008_RS23045 () | 82663..83097 | - | 435 | WP_001297861.1 | conjugation system SOS inhibitor PsiB | - |
| G6008_RS23050 () | 83152..85116 | - | 1965 | WP_001587501.1 | ParB/RepB/Spo0J family partition protein | - |
| G6008_RS23055 () | 85182..85415 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| G6008_RS23060 () | 85473..86000 | - | 528 | WP_000290825.1 | single-stranded DNA-binding protein | - |
| G6008_RS23285 () | 86026..86232 | - | 207 | WP_000275848.1 | hypothetical protein | - |
| G6008_RS23070 () | 86782..86973 | - | 192 | WP_001027500.1 | hypothetical protein | - |
| G6008_RS23075 () | 86970..87392 | - | 423 | WP_001587500.1 | DUF1380 family protein | - |
| G6008_RS23080 () | 87439..87741 | - | 303 | WP_167778874.1 | antirestriction protein | - |
| G6008_RS23090 () | 88483..89454 | - | 972 | WP_001519995.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| G6008_RS23095 () | 89454..90620 | - | 1167 | WP_001519994.1 | Sporulation initiation inhibitor protein Soj | VF |
| G6008_RS23100 () | 91083..91280 | - | 198 | Protein_98 | CcdB family protein | - |
| G6008_RS23105 () | 91402..92160 | + | 759 | Protein_99 | IS21 family transposase | - |
| G6008_RS23110 () | 92549..93001 | - | 453 | WP_001519992.1 | N-acetyltransferase | - |
| G6008_RS23115 () | 93154..93543 | + | 390 | Protein_101 | hypothetical protein | - |
| G6008_RS23120 () | 93563..93910 | - | 348 | WP_000142451.1 | hypothetical protein | - |
| G6008_RS23125 () | 94039..94374 | + | 336 | WP_001080730.1 | colicin 1A immunity protein | - |
| G6008_RS23130 () | 94396..95670 | - | 1275 | WP_209308840.1 | colicin-Ia | - |
| G6008_RS23135 () | 95894..96265 | - | 372 | WP_167778866.1 | colicin | - |
| G6008_RS23140 () | 96610..96903 | - | 294 | WP_097427344.1 | YqjK-like family protein | - |
| G6008_RS23145 () | 96900..97301 | - | 402 | WP_097765519.1 | phage holin family protein | - |
| G6008_RS23150 () | 97385..97738 | - | 354 | WP_000990989.1 | hypothetical protein | - |
| G6008_RS23155 () | 97810..98058 | - | 249 | WP_089578537.1 | DUF883 family protein | - |
| G6008_RS23160 () | 98644..98961 | - | 318 | WP_000845366.1 | Major pilu subunit operon regulatory protein PapB | VF |
| G6008_RS23165 () | 99628..100620 | - | 993 | WP_073534304.1 | nuclease PIN | - |
| G6008_RS23170 () | 100648..101157 | - | 510 | WP_167778867.1 | Minor fimbrial protein PrsF | VF |
| G6008_RS23175 () | 101189..101704 | - | 516 | WP_167778868.1 | hypothetical protein | VF |
| G6008_RS23180 () | 101741..102472 | - | 732 | WP_167778869.1 | Chaperone protein PapD | VF |
| G6008_RS23185 () | 102541..105051 | - | 2511 | WP_167778870.1 | Outer membrane usher protein PapC | VF |
| G6008_RS23190 () | 105172..105759 | - | 588 | WP_167778871.1 | PAP fimbrial minor pilin protein | VF |
| G6008_RS23195 () | 105835..106362 | - | 528 | WP_167778872.1 | Pap fimbrial major pilin protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|