MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 105583 bp
Accession: NZ_CP050048 Location: 1..105583 Organism: Escherichia coli strain 90-1 Replicon: plasmid pCD90-1-1
Accession: NZ_CP050048 Location: 1..105583 Organism: Escherichia coli strain 90-1 Replicon: plasmid pCD90-1-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
G9P52_RS22965 () | 46..1077 | + | 1032 | WP_080182593.1 | replication initiation protein | - |
G9P52_RS22970 () | 2019..2270 | + | 252 | WP_001139206.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
G9P52_RS22975 () | 2267..2554 | + | 288 | WP_038976993.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
G9P52_RS22980 () | 2842..3045 | - | 204 | WP_038976994.1 | alkaline phosphatase | - |
G9P52_RS22985 () | 3035..3240 | + | 206 | Protein_4 | transposase | - |
G9P52_RS22990 () | 3416..6913 | - | 3498 | WP_113078458.1 | Outer membrane protein IcsA autotransporter | VF |
G9P52_RS22995 () | 7497..7741 | - | 245 | Protein_6 | IS91 family transposase | - |
G9P52_RS23000 () | 7803..7961 | - | 159 | Protein_7 | AAA family ATPase | - |
G9P52_RS23005 () | 7978..8700 | - | 723 | Protein_8 | IS3 family transposase IS1351 | Transposase |
G9P52_RS23010 () | 8740..9953 | + | 1214 | WP_188028020.1 | IS3 family transposase ISCfr6 | Transposase |
G9P52_RS23015 () | 9968..10350 | - | 383 | Protein_10 | transposase | - |
G9P52_RS23020 () | 10433..10573 | + | 141 | WP_001361733.1 | hypothetical protein | - |
G9P52_RS23025 () | 11129..11467 | - | 339 | WP_000760914.1 | c-type lysozyme inhibitor | - |
G9P52_RS23030 () | 11626..11934 | - | 309 | WP_000627058.1 | PerC family transcriptional regulator | - |
G9P52_RS23035 () | 12024..12758 | + | 735 | WP_000578339.1 | helix-turn-helix domain-containing protein | - |
G9P52_RS23040 () | 12972..13310 | + | 339 | WP_097756992.1 | Serine acetyltransferase | VF |
G9P52_RS23045 () | 13589..14182 | - | 594 | WP_097756987.1 | proQ/FINO family protein | - |
G9P52_RS23050 () | 15081..15845 | + | 765 | WP_000340226.1 | helix-turn-helix domain-containing protein | - |
G9P52_RS23055 () | 16009..17118 | - | 1110 | WP_000737315.1 | porin OmpC | - |
G9P52_RS23060 () | 18138..18728 | - | 591 | WP_000194574.1 | hypothetical protein | - |
G9P52_RS23065 () | 18728..18985 | - | 258 | WP_001542562.1 | hypothetical protein | - |
G9P52_RS23070 () | 19554..19967 | + | 414 | WP_113078464.1 | hypothetical protein | - |
G9P52_RS23075 () | 19969..20748 | + | 780 | WP_113078462.1 | site-specific integrase | - |
G9P52_RS23080 () | 20928..21572 | + | 645 | WP_001144036.1 | ParA family protein | - |
G9P52_RS23085 () | 21659..21967 | + | 309 | WP_000030199.1 | hypothetical protein | - |
G9P52_RS23090 () | 22381..23361 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
G9P52_RS23095 () | 23354..23770 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
G9P52_RS23100 () | 23772..25046 | - | 1275 | WP_063077240.1 | Y-family DNA polymerase | - |
G9P52_RS23105 () | 25046..25483 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
G9P52_RS23110 () | 25480..25728 | - | 249 | WP_000618111.1 | DinI-like family protein | - |
G9P52_RS23115 () | 26146..27048 | + | 903 | WP_003981130.1 | DUF1281 domain-containing protein | - |
G9P52_RS23120 () | 27045..27355 | + | 311 | Protein_31 | hypothetical protein | - |
G9P52_RS23125 () | 27432..28115 | + | 684 | WP_000086174.1 | DNA methylase | - |
G9P52_RS23130 () | 28116..28337 | + | 222 | WP_001104879.1 | hypothetical protein | - |
G9P52_RS23135 () | 28351..28785 | + | 435 | WP_000274499.1 | DUF1380 family protein | - |
G9P52_RS23140 () | 28830..29600 | + | 771 | WP_001006206.1 | hypothetical protein | - |
G9P52_RS23145 () | 30141..30443 | + | 303 | WP_001671341.1 | antirestriction protein | - |
G9P52_RS23150 () | 30490..30912 | + | 423 | WP_000271763.1 | DUF1380 family protein | - |
G9P52_RS23155 () | 30909..31100 | + | 192 | WP_113078400.1 | hypothetical protein | - |
G9P52_RS23160 () | 31872..32399 | + | 528 | WP_113078404.1 | single-stranded DNA-binding protein | - |
G9P52_RS23165 () | 32457..32690 | + | 234 | WP_000006012.1 | DUF905 family protein | - |
G9P52_RS23170 () | 32749..34707 | + | 1959 | WP_188028021.1 | ParB/RepB/Spo0J family partition protein | - |
G9P52_RS23175 () | 34762..35196 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
G9P52_RS23180 () | 35193..35912 | + | 720 | WP_001276262.1 | plasmid SOS inhibition protein A | - |
G9P52_RS23185 () | 35909..36505 | + | 597 | WP_053291135.1 | hypothetical protein | - |
G9P52_RS23190 () | 36968..37468 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
G9P52_RS23195 () | 38197..38631 | + | 435 | WP_000218863.1 | hypothetical protein | - |
G9P52_RS23200 () | 38724..38990 | + | 267 | WP_001247862.1 | hypothetical protein | - |
G9P52_RS23205 () | 39055..39969 | + | 915 | WP_000038401.1 | Recombination-promoting nuclease RpnA | VF |
G9P52_RS23210 () | 39992..40189 | + | 198 | WP_001348086.1 | hypothetical protein | - |
G9P52_RS23215 () | 40220..40471 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
G9P52_RS23220 () | 40505..40702 | - | 198 | WP_113078408.1 | hypothetical protein | - |
G9P52_RS23225 () | 41051..41899 | + | 849 | WP_113078410.1 | DUF4942 domain-containing protein | - |
G9P52_RS23230 () | 42741..43088 | - | 348 | WP_000907512.1 | hypothetical protein | - |
G9P52_RS23235 () | 43338..43652 | + | 315 | WP_113078412.1 | mobilization protein | - |
G9P52_RS23240 () | 43681..46434 | + | 2754 | WP_113078414.1 | Protein TraI | Relaxase |
G9P52_RS23245 () | 46470..48791 | - | 2322 | WP_113078416.1 | TraM recognition domain-containing protein | - |
G9P52_RS23250 () | 48845..49330 | - | 486 | WP_019842531.1 | single-stranded DNA-binding protein | - |
G9P52_RS23255 () | 49978..52359 | - | 2382 | WP_001313395.1 | glycoside hydrolase family 31 protein | - |
G9P52_RS23260 () | 52374..53675 | - | 1302 | WP_001329026.1 | MFS transporter | - |
G9P52_RS23265 () | 53937..55028 | + | 1092 | WP_019842532.1 | LacI family transcriptional regulator | - |
G9P52_RS23270 () | 55110..56321 | - | 1212 | WP_113078418.1 | DsbC family protein | - |
G9P52_RS23275 () | 56387..57580 | - | 1194 | WP_188028016.1 | hypothetical protein | - |
G9P52_RS23280 () | 57596..59809 | - | 2214 | WP_113078420.1 | type IA DNA topoisomerase | - |
- () | 59988..60048 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
- () | 59988..60048 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
- () | 59988..60048 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
- () | 59988..60048 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
G9P52_RS23285 () | 60100..60252 | + | 153 | WP_023156060.1 | Hok/Gef family protein | Toxin Detail |
G9P52_RS23290 () | 60324..60575 | - | 252 | WP_001685192.1 | hypothetical protein | - |
G9P52_RS23295 () | 60779..60985 | + | 207 | WP_174217952.1 | hypothetical protein | - |
G9P52_RS23300 () | 61091..62041 | - | 951 | WP_188028017.1 | hypothetical protein | - |
G9P52_RS23305 () | 62110..64254 | - | 2145 | WP_113078422.1 | DotA/TraY family protein | - |
G9P52_RS23310 () | 64289..64513 | - | 225 | WP_050869039.1 | hypothetical protein | - |
G9P52_RS23315 () | 64516..65079 | - | 564 | WP_019842541.1 | conjugal transfer protein TraX | - |
G9P52_RS23320 () | 65076..66287 | - | 1212 | WP_024186481.1 | conjugal transfer protein TraW | - |
G9P52_RS23325 () | 66384..69446 | - | 3063 | WP_050869041.1 | conjugal transfer protein | - |
G9P52_RS23330 () | 69446..70153 | - | 708 | WP_050869042.1 | hypothetical protein | - |
G9P52_RS23335 () | 70166..70702 | - | 537 | WP_000906794.1 | Phospholipase D | VF |
G9P52_RS23340 () | 70753..71175 | - | 423 | WP_019842545.1 | hypothetical protein | - |
G9P52_RS23345 () | 71214..71747 | - | 534 | WP_113078424.1 | conjugal transfer protein TraQ | - |
G9P52_RS23350 () | 71747..72634 | - | 888 | WP_096985725.1 | conjugal transfer protein TraP | - |
G9P52_RS23355 () | 72627..73922 | - | 1296 | WP_113078426.1 | conjugal transfer protein TraO | - |
G9P52_RS23360 () | 73926..74873 | - | 948 | WP_019842549.1 | hypothetical protein | VF |
G9P52_RS23365 () | 74890..75588 | - | 699 | WP_019842550.1 | DotI/IcmL family type IV secretion protein | - |
G9P52_RS23370 () | 75596..75985 | - | 390 | WP_021560342.1 | hypothetical protein | - |
G9P52_RS23375 () | 76042..79758 | - | 3717 | WP_162733163.1 | DNA primase | - |
G9P52_RS23380 () | 79863..80150 | - | 288 | WP_021560340.1 | hypothetical protein | - |
G9P52_RS23385 () | 80160..81317 | - | 1158 | WP_021560339.1 | putative protein YggR | VF |
G9P52_RS23390 () | 81317..82129 | - | 813 | WP_054175616.1 | hypothetical protein | VF |
G9P52_RS23395 () | 82132..82581 | - | 450 | WP_021560337.1 | DotD/TraH family lipoprotein | - |
G9P52_RS23400 () | 82627..82815 | - | 189 | WP_100033979.1 | hypothetical protein | - |
G9P52_RS23405 () | 83527..84729 | - | 1203 | WP_054175615.1 | conjugal transfer protein TraF | - |
G9P52_RS23410 () | 84815..85639 | - | 825 | WP_188028018.1 | conjugal transfer protein TraE | - |
G9P52_RS23415 () | 85790..86950 | - | 1161 | WP_019842560.1 | integrase | - |
G9P52_RS23420 () | 88392..89840 | - | 1449 | WP_112928415.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
G9P52_RS23425 () | 89849..90424 | - | 576 | WP_021560331.1 | prepilin peptidase | - |
G9P52_RS23430 () | 90436..90936 | - | 501 | WP_021560330.1 | hypothetical protein | VF |
G9P52_RS23435 () | 90984..91589 | - | 606 | WP_113078432.1 | hypothetical protein | VF |
G9P52_RS23440 () | 91614..92678 | - | 1065 | WP_113078434.1 | Toxin coregulated pilus biosynthesis protein E | VF |
G9P52_RS23445 () | 92668..94206 | - | 1539 | WP_113078436.1 | Putative type II secretion system protein E | VF |
G9P52_RS23450 () | 94196..94645 | - | 450 | WP_021560326.1 | type IV pilus biogenesis protein PilP | - |
G9P52_RS23455 () | 94638..95945 | - | 1308 | WP_021560325.1 | type 4b pilus protein PilO2 | - |
G9P52_RS23460 () | 95953..97599 | - | 1647 | WP_021560324.1 | Outer membrane lipoprotein BfpB | VF |
G9P52_RS23465 () | 97616..98086 | - | 471 | WP_113078438.1 | type IV pilus biogenesis protein PilM | - |
G9P52_RS23470 () | 98098..99144 | - | 1047 | WP_162733164.1 | hypothetical protein | VF |
G9P52_RS23475 () | 99573..100268 | - | 696 | WP_113078443.1 | hypothetical protein | - |
G9P52_RS23480 () | 100367..100621 | - | 255 | WP_021560320.1 | PilI type IV pilus biogenesis protein | - |
G9P52_RS23485 () | 100783..101367 | - | 585 | WP_113078448.1 | hypothetical protein | - |
G9P52_RS23490 () | 101364..101642 | - | 279 | WP_113078450.1 | hypothetical protein | - |
G9P52_RS23495 () | 101671..102252 | - | 582 | WP_113078452.1 | hypothetical protein | - |
G9P52_RS23500 () | 102266..102946 | - | 681 | WP_188028019.1 | conjugal transfer protein TraC | - |
G9P52_RS23505 () | 103210..103743 | - | 534 | WP_021560316.1 | hypothetical protein | - |
G9P52_RS23510 () | 104189..104476 | - | 288 | WP_019842580.1 | conjugal transfer protein TraA | - |
G9P52_RS23515 () | 104394..104657 | - | 264 | Protein_110 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
---|