MGE detailed information
MGE type: IScluster/Tn MGE length: 19517 bp
Accession: NZ_CP049286 Location: 111412..130928 Organism: Shigella boydii strain 602068 Replicon: plasmid p602068_185
Accession: NZ_CP049286 Location: 111412..130928 Organism: Shigella boydii strain 602068 Replicon: plasmid p602068_185
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5S54_RS23710 () | 110046..110273 | + | 228 | WP_000450530.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| G5S54_RS23715 () | 110273..110671 | + | 399 | WP_000911318.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| G5S54_RS23720 () | 110680..111162 | - | 483 | Protein_130 | conjugal transfer protein TraD | - |
| G5S54_RS23725 () | 111218..111915 | + | 698 | Protein_131 | IS1 family transposase IS1X2 | Transposase |
| G5S54_RS23730 () | 111931..112602 | + | 672 | Protein_132 | IS630 family transposase IS630 | Transposase |
| G5S54_RS23735 () | 112756..113700 | - | 945 | WP_005027201.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| G5S54_RS23740 () | 113765..114715 | - | 951 | WP_005059240.1 | virulence factor VirK | - |
| G5S54_RS23745 () | 114720..115808 | - | 1089 | WP_005059238.1 | putative hexosyltransferase CapU | - |
| G5S54_RS23750 () | 115811..116653 | - | 843 | WP_000931198.1 | polysaccharide deacetylase family protein | - |
| G5S54_RS23755 () | 117017..117133 | - | 117 | WP_004996477.1 | hypothetical protein | - |
| G5S54_RS23760 () | 117340..118037 | + | 698 | Protein_138 | IS1 family transposase IS1X2 | Transposase |
| G5S54_RS23765 () | 118101..118273 | - | 173 | Protein_139 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| G5S54_RS23770 () | 118270..118539 | - | 270 | WP_000079956.1 | hypothetical protein | - |
| G5S54_RS23775 () | 118747..120384 | - | 1638 | WP_039060807.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| G5S54_RS23780 () | 120646..120753 | - | 108 | WP_023592908.1 | transposase domain-containing protein | - |
| G5S54_RS23785 () | 120777..121082 | - | 306 | WP_001159860.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| G5S54_RS23790 () | 121084..121302 | - | 219 | WP_000813626.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| G5S54_RS23800 () | 123241..123537 | + | 297 | WP_072072579.1 | IS66 family transposase IS682 | Transposase |
| G5S54_RS23805 () | 123534..123884 | + | 351 | WP_000624671.1 | IS66 family transposase IS682 | Transposase |
| G5S54_RS23810 () | 123915..125507 | + | 1593 | WP_001072385.1 | IS66 family transposase ISEc43 | Transposase |
| G5S54_RS23815 () | 125733..125852 | + | 120 | Protein_149 | transposase domain-containing protein | - |
| G5S54_RS23820 () | 125892..126152 | - | 261 | Protein_150 | IS1 family transposase | - |
| G5S54_RS23825 () | 126204..127416 | + | 1213 | Protein_151 | IS3 family transposase IS629 | Transposase |
| G5S54_RS23830 () | 127536..127736 | + | 201 | WP_073692504.1 | transposase | - |
| G5S54_RS23835 () | 127723..129375 | - | 1653 | WP_032490757.1 | bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA | - |
| G5S54_RS23840 () | 129716..130928 | - | 1213 | Protein_154 | IS3 family transposase IS629 | Transposase |
| G5S54_RS23845 () | 130954..131251 | - | 298 | Protein_155 | fimbria/pilus outer membrane usher protein | - |
| G5S54_RS23850 () | 131437..134745 | - | 3309 | WP_039064436.1 | outer membrane autotransporter IcsA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|