MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 82464 bp
Accession: NZ_CP048881 Location: 1..82464 Organism: Spartinivicinus ruber strain S2-4-1H Replicon: plasmid pC
Accession: NZ_CP048881 Location: 1..82464 Organism: Spartinivicinus ruber strain S2-4-1H Replicon: plasmid pC
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G4Y78_RS30095 () | 594..1187 | - | 594 | WP_163836917.1 | hypothetical protein | - |
| G4Y78_RS30100 () | 1383..1718 | - | 336 | WP_163836918.1 | hypothetical protein | - |
| G4Y78_RS30105 () | 1862..2716 | - | 855 | WP_163836919.1 | helix-turn-helix domain-containing protein | - |
| G4Y78_RS30110 () | 3283..3915 | - | 633 | WP_163836920.1 | LexA family transcriptional regulator | - |
| G4Y78_RS30115 () | 4084..4506 | + | 423 | WP_163836921.1 | hypothetical protein | - |
| G4Y78_RS30120 () | 4506..5276 | + | 771 | WP_163836922.1 | ATP-binding protein | - |
| G4Y78_RS30125 () | 5269..5748 | + | 480 | WP_163836923.1 | DUF669 domain-containing protein | - |
| G4Y78_RS30130 () | 5767..6807 | + | 1041 | WP_178124491.1 | oxidoreductase | - |
| G4Y78_RS30135 () | 6810..8405 | + | 1596 | WP_163836924.1 | DEAD/DEAH box helicase | - |
| G4Y78_RS30140 () | 8415..10613 | + | 2199 | WP_163836925.1 | bifunctional DNA primase/polymerase | - |
| G4Y78_RS30145 () | 10906..11265 | + | 360 | WP_163836926.1 | VRR-NUC domain-containing protein | - |
| G4Y78_RS30150 () | 11281..11787 | + | 507 | WP_163836927.1 | hypothetical protein | - |
| G4Y78_RS30155 () | 11797..12228 | + | 432 | WP_163836928.1 | GIY-YIG nuclease family protein | - |
| G4Y78_RS30160 () | 12481..12735 | + | 255 | WP_163836929.1 | hypothetical protein | - |
| G4Y78_RS30165 () | 12964..13380 | + | 417 | WP_163836930.1 | hypothetical protein | - |
| G4Y78_RS30170 () | 13736..14119 | + | 384 | WP_163836931.1 | N-acetylmuramoyl-L-alanine amidase | - |
| G4Y78_RS30175 () | 14116..14721 | + | 606 | WP_163836932.1 | YfbU family protein | - |
| G4Y78_RS30180 () | 15002..15196 | - | 195 | WP_163836933.1 | cold-shock protein | - |
| G4Y78_RS30185 () | 15273..16031 | - | 759 | WP_163836934.1 | transporter substrate-binding domain-containing protein | - |
| G4Y78_RS30190 () | 16046..16450 | + | 405 | WP_163836935.1 | hypothetical protein | - |
| G4Y78_RS30195 () | 16452..17168 | + | 717 | WP_163836936.1 | phage antirepressor KilAC domain-containing protein | - |
| G4Y78_RS30200 () | 17194..17442 | + | 249 | WP_163836937.1 | hypothetical protein | - |
| G4Y78_RS30205 () | 17444..18208 | - | 765 | WP_163836938.1 | transporter substrate-binding domain-containing protein | - |
| G4Y78_RS30210 () | 18327..18593 | - | 267 | WP_163836939.1 | hypothetical protein | - |
| G4Y78_RS30215 () | 18832..19338 | + | 507 | WP_163836940.1 | DUF1441 family protein | - |
| G4Y78_RS30220 () | 19308..21305 | + | 1998 | WP_163836941.1 | phage terminase large subunit family protein | - |
| G4Y78_RS30225 () | 21510..22976 | + | 1467 | WP_163836942.1 | phage portal protein | - |
| G4Y78_RS30230 () | 22973..24253 | + | 1281 | WP_163836943.1 | S49 family peptidase | - |
| G4Y78_RS30235 () | 24257..24610 | + | 354 | WP_163836944.1 | head decoration protein | - |
| G4Y78_RS30240 () | 24607..24975 | - | 369 | WP_163836945.1 | PilZ domain-containing protein | - |
| G4Y78_RS30245 () | 25061..26062 | + | 1002 | WP_163836946.1 | major capsid protein | - |
| G4Y78_RS30250 () | 26062..26412 | + | 351 | WP_163836947.1 | hypothetical protein | - |
| G4Y78_RS30255 () | 26396..26995 | + | 600 | WP_163836948.1 | hypothetical protein | - |
| G4Y78_RS30260 () | 26976..27467 | + | 492 | WP_163836949.1 | hypothetical protein | - |
| G4Y78_RS30265 () | 27460..28053 | + | 594 | WP_163836950.1 | phage baseplate assembly protein V | - |
| G4Y78_RS30270 () | 28066..28419 | + | 354 | WP_163836951.1 | baseplate assembly protein W | - |
| G4Y78_RS30275 () | 28409..29254 | + | 846 | WP_163836952.1 | baseplate J/gp47 family protein | - |
| G4Y78_RS30280 () | 29241..29873 | + | 633 | WP_163836953.1 | phage tail protein I | - |
| G4Y78_RS30285 () | 29880..30815 | + | 936 | WP_163836954.1 | phage tail protein | - |
| G4Y78_RS30290 () | 30815..31348 | + | 534 | WP_163836955.1 | hypothetical protein | - |
| G4Y78_RS30295 () | 31335..31820 | + | 486 | WP_163836956.1 | hypothetical protein | - |
| G4Y78_RS30300 () | 31827..32312 | + | 486 | WP_163836957.1 | hypothetical protein | - |
| G4Y78_RS30305 () | 32313..33470 | + | 1158 | WP_163836958.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| G4Y78_RS30310 () | 33485..33994 | + | 510 | WP_163836959.1 | phage major tail tube protein | - |
| G4Y78_RS30315 () | 33997..34254 | + | 258 | WP_163836960.1 | phage tail assembly protein | - |
| G4Y78_RS30320 () | 34260..34418 | + | 159 | WP_163836961.1 | GpE family phage tail protein | - |
| G4Y78_RS30325 () | 34429..36909 | + | 2481 | WP_163836962.1 | phage tail tape measure protein | - |
| G4Y78_RS30330 () | 36902..37324 | + | 423 | WP_163836963.1 | phage tail protein | - |
| G4Y78_RS30335 () | 37348..37524 | + | 177 | WP_163837013.1 | tail protein X | - |
| G4Y78_RS30340 () | 37849..38805 | + | 957 | WP_163836964.1 | hypothetical protein | - |
| G4Y78_RS30345 () | 39038..40279 | + | 1242 | WP_163836965.1 | MFS transporter | - |
| G4Y78_RS30350 () | 40381..43488 | - | 3108 | WP_163836108.1 | Tn3 family transposase | - |
| G4Y78_RS30355 () | 43679..44269 | + | 591 | WP_163836109.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| G4Y78_RS30360 () | 44424..44618 | + | 195 | WP_163836966.1 | hypothetical protein | - |
| G4Y78_RS30365 () | 44691..45698 | + | 1008 | WP_163837014.1 | major capsid protein | - |
| G4Y78_RS30370 () | 45682..46053 | + | 372 | WP_163836967.1 | hypothetical protein | - |
| G4Y78_RS30375 () | 46028..46624 | + | 597 | WP_163836968.1 | phage tail protein | - |
| G4Y78_RS30380 () | 46617..47114 | + | 498 | WP_163836969.1 | hypothetical protein | - |
| G4Y78_RS30385 () | 47098..47706 | + | 609 | WP_163836970.1 | phage baseplate assembly protein V | - |
| G4Y78_RS30390 () | 47703..48038 | + | 336 | WP_163836971.1 | phage baseplate protein | - |
| G4Y78_RS30395 () | 48035..49069 | + | 1035 | WP_163836972.1 | baseplate J/gp47 family protein | - |
| G4Y78_RS30400 () | 49066..49698 | + | 633 | WP_163836973.1 | phage tail protein I | - |
| G4Y78_RS30405 () | 49695..51002 | + | 1308 | WP_163836974.1 | phage tail protein | - |
| G4Y78_RS30410 () | 51002..51535 | + | 534 | WP_163836975.1 | hypothetical protein | - |
| G4Y78_RS30415 () | 51522..52007 | + | 486 | WP_163836976.1 | hypothetical protein | - |
| G4Y78_RS30420 () | 52014..52505 | + | 492 | WP_163836977.1 | hypothetical protein | - |
| G4Y78_RS30425 () | 52499..52669 | + | 171 | WP_163836978.1 | hypothetical protein | - |
| G4Y78_RS30430 () | 52669..53838 | + | 1170 | WP_163836979.1 | phage tail protein | - |
| G4Y78_RS30435 () | 53835..54344 | + | 510 | WP_163836980.1 | phage major tail tube protein | - |
| G4Y78_RS30440 () | 54344..54931 | + | 588 | WP_163836981.1 | hypothetical protein | - |
| G4Y78_RS30445 () | 55044..57620 | + | 2577 | WP_163836982.1 | phage tail tape measure protein | - |
| G4Y78_RS30450 () | 57617..57997 | + | 381 | WP_163836983.1 | phage tail protein | - |
| G4Y78_RS30455 () | 57997..58212 | + | 216 | WP_163836984.1 | tail protein X | - |
| G4Y78_RS30460 () | 58203..59204 | + | 1002 | WP_163836985.1 | phage late control D family protein | - |
| G4Y78_RS30465 () | 59697..59888 | + | 192 | WP_163836986.1 | hypothetical protein | - |
| G4Y78_RS30470 () | 60375..61763 | + | 1389 | WP_163836987.1 | hypothetical protein | - |
| G4Y78_RS30475 () | 62202..62816 | + | 615 | WP_163836988.1 | hypothetical protein | - |
| G4Y78_RS30480 () | 62818..63168 | + | 351 | WP_163836989.1 | hypothetical protein | - |
| G4Y78_RS30485 () | 63297..64853 | - | 1557 | WP_163836990.1 | Fic family protein | - |
| G4Y78_RS30490 () | 65370..66017 | - | 648 | WP_163836991.1 | hypothetical protein | - |
| G4Y78_RS30495 () | 66027..66377 | - | 351 | WP_163836992.1 | type II toxin-antitoxin system ChpB family toxin | Toxin Detail |
| G4Y78_RS30500 () | 66371..66628 | - | 258 | WP_163836993.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| G4Y78_RS30505 () | 66905..67756 | - | 852 | WP_163836994.1 | hypothetical protein | - |
| G4Y78_RS30510 () | 68140..68733 | + | 594 | WP_163836995.1 | tyrosine-type recombinase/integrase | - |
| G4Y78_RS30515 () | 68768..70504 | - | 1737 | WP_163836996.1 | Methyl-accepting chemotaxis protein McpQ | VF |
| G4Y78_RS30520 () | 70641..70784 | + | 144 | WP_163836997.1 | hypothetical protein | - |
| G4Y78_RS30525 () | 71884..72675 | - | 792 | WP_163836998.1 | hypothetical protein | - |
| G4Y78_RS30530 () | 73026..73289 | - | 264 | WP_163837015.1 | excalibur calcium-binding domain-containing protein | - |
| G4Y78_RS30535 () | 73733..74653 | + | 921 | WP_163836999.1 | hypothetical protein | - |
| G4Y78_RS30540 () | 74806..75216 | - | 411 | WP_163837000.1 | hypothetical protein | - |
| G4Y78_RS30545 () | 75258..75545 | - | 288 | WP_163837001.1 | hypothetical protein | - |
| G4Y78_RS30550 () | 75751..76062 | + | 312 | WP_163837002.1 | type II toxin-antitoxin system HigB family toxin | Toxin Detail |
| G4Y78_RS30555 () | 76059..76487 | + | 429 | WP_163837003.1 | transcriptional regulator | Antitoxin Detail |
| G4Y78_RS30560 () | 76501..76809 | + | 309 | WP_163837004.1 | helix-turn-helix domain-containing protein | - |
| G4Y78_RS30565 () | 76955..77194 | + | 240 | WP_163837005.1 | hypothetical protein | - |
| G4Y78_RS30570 () | 77218..78330 | - | 1113 | WP_163837006.1 | YrzE family protein | - |
| G4Y78_RS30575 () | 78496..78849 | - | 354 | WP_163837007.1 | hypothetical protein | - |
| G4Y78_RS30580 () | 78833..79501 | - | 669 | WP_163837008.1 | AAA family ATPase | - |
| G4Y78_RS30585 () | 79804..80097 | + | 294 | WP_163837009.1 | MarR family transcriptional regulator | - |
| G4Y78_RS30590 () | 80219..80920 | + | 702 | WP_163837010.1 | transporter substrate-binding domain-containing protein | - |
| G4Y78_RS30595 () | 81091..81849 | - | 759 | WP_163837011.1 | transporter substrate-binding domain-containing protein | - |
| G4Y78_RS30600 () | 82073..82453 | - | 381 | WP_163837012.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|