MGE detailed information
MGE type: Prophage MGE length: 54789 bp
Accession: NZ_CP048439 Location: 2181110..2235898 Organism: Escherichia coli strain NBRC 3301 Replicon: chromosome
Accession: NZ_CP048439 Location: 2181110..2235898 Organism: Escherichia coli strain NBRC 3301 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GXM24_RS10440 () | 2177201..2177566 | + | 366 | WP_000276149.1 | multidrug/spermidine efflux SMR transporter subunit MdtJ | - |
| GXM24_RS10445 () | 2177553..2177882 | + | 330 | WP_000046661.1 | multidrug/spermidine efflux SMR transporter subunit MdtI | - |
| GXM24_RS10450 () | 2177921..2178742 | - | 822 | WP_001260865.1 | serine protease | - |
| GXM24_RS10455 () | 2178842..2178925 | - | 84 | WP_000233093.1 | stationary phase-induced protein | - |
| GXM24_RS10460 () | 2179018..2179326 | - | 309 | WP_001340364.1 | acid resistance repetitive basic protein Asr | - |
| GXM24_RS10465 () | 2179750..2181003 | - | 1254 | WP_000091840.1 | MFS transporter | - |
| GXM24_RS10470 () | 2181110..2182003 | + | 894 | WP_001019525.1 | hypothetical protein | VF |
| GXM24_RS10475 () | 2182138..2183358 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| GXM24_RS10480 () | 2183483..2184178 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| GXM24_RS10485 () | 2184131..2185423 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| GXM24_RS10490 () | 2185582..2186196 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| GXM24_RS10495 () | 2186239..2187093 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| GXM24_RS10500 () | 2187095..2187712 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| GXM24_RS10505 () | 2187723..2190146 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| GXM24_RS10510 () | 2190207..2192633 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| GXM24_RS10515 () | 2192832..2193137 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| GXM24_RS10520 () | 2193245..2193955 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| GXM24_RS10525 () | 2193958..2194518 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| GXM24_RS10530 () | 2194553..2194894 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| GXM24_RS10535 () | 2195029..2195355 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| GXM24_RS10540 () | 2195561..2196775 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| GXM24_RS10545 () | 2196787..2197806 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| GXM24_RS10550 () | 2197864..2197974 | + | 111 | WP_001360138.1 | hypothetical protein | - |
| GXM24_RS10555 () | 2197994..2199151 | - | 1158 | Protein_2054 | hypothetical protein ; Integrase | Integrase |
| GXM24_RS10560 () | 2199165..2199860 | - | 696 | Protein_2055 | IS3 family transposase IS2 | Transposase |
| GXM24_RS10565 () | 2199857..2200624 | - | 768 | Protein_2056 | exonuclease | - |
| GXM24_RS10570 () | 2200717..2200908 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| GXM24_RS10575 () | 2200905..2201093 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| GXM24_RS10585 () | 2201661..2201879 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| GXM24_RS10590 () | 2202039..2202194 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| GXM24_RS10595 () | 2202361..2202768 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| GXM24_RS10600 () | 2202852..2203082 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| GXM24_RS10605 () | 2203066..2203344 | + | 279 | Protein_2063 | hypothetical protein | - |
| GXM24_RS10610 () | 2203379..2203528 | + | 150 | WP_011443592.1 | hypothetical protein | - |
| GXM24_RS10615 () | 2203965..2204297 | - | 333 | WP_001301033.1 | protein FlxA | - |
| GXM24_RS10620 () | 2204500..2204805 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| GXM24_RS10625 () | 2204830..2205069 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| GXM24_RS10630 () | 2205069..2205356 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| GXM24_RS10635 () | 2205428..2205583 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| GXM24_RS10640 () | 2205800..2206051 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| GXM24_RS10645 () | 2206118..2206396 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| GXM24_RS10650 () | 2206398..2207447 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| GXM24_RS10655 () | 2207461..2208213 | + | 753 | WP_001047135.1 | antitermination protein | - |
| GXM24_RS10660 () | 2208491..2208580 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| GXM24_RS10665 () | 2208635..2208847 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| GXM24_RS10670 () | 2209148..2209363 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| GXM24_RS10675 () | 2210117..2210332 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| GXM24_RS10680 () | 2210337..2210648 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| GXM24_RS10685 () | 2210645..2211178 | + | 534 | WP_001092971.1 | lysozyme | - |
| GXM24_RS10690 () | 2211175..2211672 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| GXM24_RS10695 () | 2212035..2212247 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| GXM24_RS10700 () | 2212258..2212446 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| GXM24_RS10705 () | 2212449..2212514 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| GXM24_RS10710 () | 2212593..2212748 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| GXM24_RS10715 () | 2212920..2213093 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| GXM24_RS10720 () | 2213245..2213655 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| GXM24_RS10725 () | 2213713..2213946 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| GXM24_RS10730 () | 2214335..2214904 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| GXM24_RS10735 () | 2214855..2215817 | + | 963 | WP_001027733.1 | phage tail protein | - |
| GXM24_RS10740 () | 2215817..2216392 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| GXM24_RS10745 () | 2216490..2217080 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| GXM24_RS10750 () | 2217397..2217630 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| GXM24_RS10755 () | 2217699..2217812 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| GXM24_RS10760 () | 2218333..2219700 | + | 1368 | Protein_2094 | MHS family MFS transporter | - |
| GXM24_RS10765 () | 2219789..2221249 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| GXM24_RS10770 () | 2221284..2221487 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| GXM24_RS10775 () | 2221664..2222350 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| GXM24_RS10780 () | 2222439..2223185 | - | 747 | WP_000636571.1 | hypothetical protein | VF |
| GXM24_RS10785 () | 2223322..2225367 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| GXM24_RS10790 () | 2225411..2225929 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| GXM24_RS10795 () | 2226205..2226597 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| GXM24_RS10800 () | 2226852..2227742 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| GXM24_RS10805 () | 2227961..2228056 | - | 96 | WP_000901367.1 | protein MgtS | - |
| GXM24_RS10810 () | 2228183..2229370 | - | 1188 | WP_001054204.1 | efflux MFS transporter YdeE | - |
| GXM24_RS10815 () | 2229565..2230464 | + | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| GXM24_RS10820 () | 2230495..2230713 | - | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| GXM24_RS10825 () | 2230745..2231128 | - | 384 | WP_000091199.1 | hypothetical protein | VF |
| GXM24_RS10830 () | 2231148..2231582 | - | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
| GXM24_RS10835 () | 2231794..2232459 | + | 666 | WP_000885033.1 | NAAT family transporter MarC | - |
| GXM24_RS10840 () | 2232484..2233674 | - | 1191 | WP_000210799.1 | L-arabinose MFS transporter | - |
| GXM24_RS10845 () | 2233824..2234939 | - | 1116 | WP_000258599.1 | putative protein YneK | - |
| GXM24_RS10850 () | 2235017..2235898 | - | 882 | WP_000366501.1 | hypothetical protein | VF |
| GXM24_RS10855 () | 2235999..2237387 | + | 1389 | WP_000156615.1 | succinate-semialdehyde dehydrogenase | - |
| GXM24_RS10860 () | 2237451..2238377 | + | 927 | WP_000257409.1 | glutaminase B | - |
| GXM24_RS10865 () | 2238377..2238736 | + | 360 | WP_001191027.1 | DUF4186 domain-containing protein | - |
| GXM24_RS10870 () | 2238809..2239795 | + | 987 | Protein_2116 | GGDEF domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli C | Prophage | TA75071 | NZ_CP020543 | 2249542..2301270 | 0.009 |