MGE detailed information
MGE type: Prophage MGE length: 42337 bp
Accession: NZ_CP047535 Location: 1905977..1948313 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10452 Replicon: chromosome
Accession: NZ_CP047535 Location: 1905977..1948313 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10452 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN08_RS09355 () | 1902170..1903066 | - | 897 | WP_010989032.1 | DUF4034 domain-containing protein | - |
| DXN08_RS09360 () | 1903486..1904097 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| DXN08_RS09365 () | 1904106..1905116 | + | 1011 | WP_000568508.1 | Holliday junction branch migration DNA helicase RuvB | - |
| DXN08_RS09370 () | 1905195..1905980 | - | 786 | WP_000571508.1 | zinc ABC transporter permease subunit ZnuB | - |
| DXN08_RS09375 () | 1905977..1906732 | - | 756 | WP_000203014.1 | Zinc import ATP-binding protein ZnuC | VF |
| DXN08_RS09380 () | 1906811..1907755 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| DXN08_RS09385 () | 1907771..1909090 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| DXN08_RS09390 () | 1909207..1910178 | + | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| DXN08_RS09395 () | 1910251..1911693 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| DXN08_RS09400 () | 1911817..1912686 | - | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| DXN08_RS09405 () | 1913028..1914503 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| DXN08_RS09410 () | 1914738..1916549 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| DXN08_RS09415 () | 1916587..1917228 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| DXN08_RS09420 () | 1917328..1918506 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| DXN08_RS09425 () | 1918637..1918927 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| DXN08_RS09430 () | 1918995..1919348 | + | 354 | WP_001042119.1 | protein YebF | - |
| DXN08_RS09435 () | 1919442..1920101 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| DXN08_RS09440 () | 1920314..1922365 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| DXN08_RS09445 () | 1922400..1923098 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| DXN08_RS09450 () | 1923122..1923778 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| DXN08_RS09455 () | 1923886..1924116 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| DXN08_RS09460 () | 1924254..1924628 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| DXN08_RS09465 () | 1924629..1925504 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| DXN08_RS09470 () | 1925521..1925874 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 1925974..1926119 | - | 146 | - | - | Antitoxin Detail |
| - | 1926014..1926117 | + | 104 | - | - | Toxin Detail |
| DXN08_RS09475 () | 1926248..1927171 | - | 924 | Protein_1854 | hypothetical protein ; Integrase | Integrase |
| DXN08_RS09480 () | 1927435..1927896 | - | 462 | Protein_1855 | DNA breaking-rejoining protein | - |
| DXN08_RS09485 () | 1927885..1928076 | + | 192 | Protein_1856 | glycoside hydrolase family 19 protein | - |
| DXN08_RS09490 () | 1928130..1928663 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| DXN08_RS09495 () | 1928920..1929087 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| DXN08_RS09500 () | 1929152..1929340 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| DXN08_RS09505 () | 1929395..1929655 | + | 261 | Protein_1860 | DUF1441 family protein | - |
| DXN08_RS09510 () | 1929870..1930214 | + | 345 | Protein_1861 | macro domain-containing protein | - |
| DXN08_RS09515 () | 1930224..1930694 | + | 471 | Protein_1862 | tail fiber assembly protein | - |
| DXN08_RS09520 () | 1930791..1930991 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| DXN08_RS09525 () | 1931381..1931561 | - | 181 | Protein_1864 | IS3 family transposase | - |
| DXN08_RS09530 () | 1931561..1931686 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| DXN08_RS24780 () | 1932200..1932346 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| DXN08_RS09535 () | 1932340..1932507 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| DXN08_RS09540 () | 1932834..1933448 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| DXN08_RS09545 () | 1933458..1933616 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| DXN08_RS09550 () | 1933749..1934662 | - | 914 | Protein_1870 | DMT family transporter | - |
| DXN08_RS09555 () | 1935975..1936397 | - | 423 | Protein_1871 | hypothetical protein ; Integrase | Integrase |
| DXN08_RS09560 () | 1936467..1937661 | + | 1195 | Protein_1872 | IS256 family transposase IS285 | Transposase |
| DXN08_RS09565 () | 1937807..1937947 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| DXN08_RS09570 () | 1938113..1938382 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| DXN08_RS09575 () | 1938752..1939171 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| DXN08_RS09580 () | 1939559..1940035 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| DXN08_RS09585 () | 1940365..1940760 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| DXN08_RS09590 () | 1941443..1942165 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| DXN08_RS09595 () | 1942450..1942614 | + | 165 | WP_001134856.1 | membrane protein | - |
| DXN08_RS09600 () | 1942838..1943488 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| DXN08_RS09605 () | 1943507..1943698 | - | 192 | WP_000457836.1 | YebW family protein | - |
| DXN08_RS09610 () | 1943809..1944045 | - | 237 | WP_024131108.1 | YebV family protein | - |
| DXN08_RS09615 () | 1944163..1945602 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DXN08_RS09620 () | 1945680..1948313 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| DXN08_RS09625 () | 1948282..1949565 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| DXN08_RS09630 () | 1949694..1950191 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| DXN08_RS09635 () | 1950289..1950975 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| DXN08_RS09640 () | 1950995..1953043 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Prophage | TA25947 | NC_016810 | 1910986..1947632 | 0.006 |