MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 65025 bp
Accession: NZ_CP047220 Location: 1..65025 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: plasmid unnamed3
Accession: NZ_CP047220 Location: 1..65025 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: plasmid unnamed3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GS397_RS26705 () | 28..3186 | + | 3159 | WP_159368250.1 | Mobilization protein A | Relaxase |
| GS397_RS26710 () | 3249..3494 | + | 246 | WP_201450357.1 | ribbon-helix-helix domain-containing protein | - |
| GS397_RS26715 () | 3498..3932 | + | 435 | WP_159368251.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| GS397_RS26720 () | 3929..4648 | + | 720 | WP_159368252.1 | hypothetical protein | - |
| GS397_RS26725 () | 4677..4934 | - | 258 | Protein_4 | hypothetical protein | - |
| GS397_RS26730 () | 4977..5159 | - | 183 | Protein_5 | cytoplasmic protein | - |
| GS397_RS26735 () | 5182..5475 | - | 294 | WP_159368253.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GS397_RS26740 () | 5468..5746 | - | 279 | WP_159368254.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| GS397_RS26745 () | 5879..6007 | + | 129 | WP_159368255.1 | hypothetical protein | Toxin Detail |
| GS397_RS26750 () | 5994..6224 | + | 231 | WP_159368256.1 | BrnA antitoxin family protein | Antitoxin Detail |
| GS397_RS26755 () | 6256..6583 | + | 328 | Protein_10 | hypothetical protein | - |
| GS397_RS26760 () | 6626..7018 | - | 393 | Protein_11 | IS66 family insertion sequence element accessory protein TnpB | - |
| GS397_RS26765 () | 6920..8293 | + | 1374 | WP_159368257.1 | hypothetical protein | - |
| GS397_RS26770 () | 8730..9011 | + | 282 | WP_082635049.1 | WGR domain-containing protein | - |
| GS397_RS26775 () | 9026..9121 | - | 96 | Protein_14 | histidine phosphatase family protein | - |
| GS397_RS26780 () | 9139..9432 | - | 294 | WP_159368258.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GS397_RS26785 () | 9420..9698 | - | 279 | WP_159368259.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| GS397_RS26790 () | 10078..10638 | + | 561 | WP_159368303.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| GS397_RS26795 () | 10653..11990 | + | 1338 | WP_159368260.1 | phosphoglucosamine mutase | - |
| GS397_RS26800 () | 12021..12329 | - | 309 | WP_159368261.1 | hypothetical protein | - |
| GS397_RS26805 () | 12326..13582 | - | 1257 | WP_159368262.1 | hypothetical protein | - |
| GS397_RS26810 () | 13582..15786 | - | 2205 | WP_159368304.1 | Tyrosine-protein kinase ptk | VF |
| GS397_RS26815 () | 15800..16510 | - | 711 | WP_159368263.1 | polysaccharide export protein | - |
| GS397_RS26820 () | 16563..17918 | - | 1356 | WP_159368264.1 | O-antigen ligase family protein | - |
| GS397_RS26825 () | 17919..19163 | - | 1245 | WP_159368265.1 | dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucose transaminase | VF |
| GS397_RS26830 () | 19194..20207 | - | 1014 | WP_159368266.1 | ATP-grasp domain-containing protein | - |
| GS397_RS26835 () | 20228..20782 | - | 555 | WP_159368267.1 | GNAT family N-acetyltransferase | - |
| GS397_RS26840 () | 20784..21701 | - | 918 | WP_159368268.1 | pyridoxal-phosphate dependent enzyme | - |
| GS397_RS26845 () | 21698..22348 | - | 651 | WP_159368269.1 | putative sugar transferase EpsL | VF |
| GS397_RS26850 () | 22419..23669 | - | 1251 | WP_159368270.1 | D-inositol-3-phosphate glycosyltransferase | VF |
| GS397_RS26855 () | 24464..24706 | + | 243 | WP_159368271.1 | hypothetical protein | - |
| GS397_RS26865 () | 25765..26814 | + | 1050 | WP_159368273.1 | ISL3 family transposase ISMex26 | Transposase |
| GS397_RS26870 () | 26846..27223 | + | 378 | Protein_33 | IS5 family transposase ISAtu2 | Transposase |
| GS397_RS26875 () | 27299..28381 | + | 1083 | WP_159368274.1 | IS5 family transposase ISMex35 | Transposase |
| GS397_RS26880 () | 28482..29564 | - | 1083 | WP_159368305.1 | IS5 family transposase ISSsp126 | Transposase |
| GS397_RS26885 () | 29592..29819 | + | 228 | WP_159368275.1 | transposase | - |
| GS397_RS26890 () | 29947..31353 | - | 1407 | WP_159368276.1 | acyltransferase | - |
| GS397_RS26895 () | 31635..32915 | - | 1281 | WP_159368277.1 | hypothetical protein | - |
| GS397_RS26905 () | 34678..35973 | - | 1296 | WP_159368279.1 | oligosaccharide flippase family protein | - |
| GS397_RS26910 () | 35989..36918 | - | 930 | WP_159368280.1 | hypothetical protein | - |
| GS397_RS26915 () | 37142..38296 | - | 1155 | WP_159368281.1 | UDP-2,3-diacetamido-2,3-dideoxy-D-glucuronate 2-epimerase | VF |
| GS397_RS26920 () | 38325..39437 | - | 1113 | WP_159368282.1 | UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase | VF |
| GS397_RS26925 () | 39434..40468 | - | 1035 | WP_159368283.1 | UDP-glucose 4-epimerase | VF |
| GS397_RS26930 () | 40516..42438 | - | 1923 | WP_159368284.1 | UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase | VF |
| GS397_RS26935 () | 42548..44371 | - | 1824 | WP_159368285.1 | glutamine--fructose-6-phosphate transaminase (isomerizing) | - |
| GS397_RS26940 () | 44436..44747 | - | 312 | WP_159368286.1 | hypothetical protein | - |
| GS397_RS26945 () | 45367..45618 | - | 252 | WP_159368287.1 | hypothetical protein | - |
| GS397_RS26950 () | 45710..46507 | - | 798 | WP_159368288.1 | serine/threonine protein phosphatase | - |
| GS397_RS26955 () | 46579..47601 | + | 1023 | WP_159368289.1 | peptidase M48 family protein | - |
| GS397_RS26960 () | 47637..47900 | - | 264 | WP_159368290.1 | hypothetical protein | - |
| GS397_RS26965 () | 48292..48657 | - | 366 | WP_159368291.1 | PilZ domain-containing protein | - |
| GS397_RS26970 () | 48961..49341 | - | 381 | Protein_53 | histidine phosphatase family protein | - |
| GS397_RS26975 () | 49421..50572 | + | 1152 | WP_159368292.1 | IS110 family transposase ISRel9 | Transposase |
| GS397_RS26980 () | 50870..51115 | - | 246 | Protein_55 | histidine phosphatase family protein | - |
| GS397_RS26985 () | 51125..51421 | - | 297 | WP_159368293.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GS397_RS26990 () | 51418..51699 | - | 282 | WP_159368294.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| GS397_RS26995 () | 52019..52204 | - | 186 | WP_159368306.1 | helix-turn-helix domain-containing protein | - |
| GS397_RS27000 () | 52233..52655 | - | 423 | WP_159368295.1 | XRE family transcriptional regulator | - |
| GS397_RS27005 () | 52961..54064 | - | 1104 | WP_015063481.1 | IS110 family transposase ISSfr2 | Transposase |
| GS397_RS27010 () | 54888..55523 | + | 636 | WP_159368296.1 | Sporulation initiation inhibitor protein Soj | VF |
| GS397_RS27015 () | 55549..55830 | + | 282 | WP_159368297.1 | hypothetical protein | - |
| GS397_RS27020 () | 55887..56798 | - | 912 | WP_159368298.1 | replication initiation protein | - |
| GS397_RS27025 () | 57785..60694 | + | 2910 | WP_006961814.1 | Tn3 family transposase TnpA_ISYps3 | Transposase |
| GS397_RS27030 () | 60837..61703 | + | 867 | WP_006961816.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| GS397_RS27035 () | 61830..63500 | - | 1671 | WP_159368299.1 | type IV secretory system conjugative DNA transfer family protein | - |
| GS397_RS27040 () | 63503..63766 | - | 264 | WP_159368300.1 | hypothetical protein | - |
| GS397_RS27045 () | 63759..64313 | - | 555 | Protein_68 | AAA family ATPase | - |
| GS397_RS27050 () | 64306..64536 | - | 231 | WP_159368307.1 | conjugal transfer protein TraD | - |
| GS397_RS27055 () | 64631..64879 | - | 249 | WP_159368301.1 | conjugal transfer protein TraD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|