MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 148043 bp
Accession: NZ_CP046840 Location: 944860..1092902 Organism: Vibrio cholerae strain F9993 Replicon: chromosome
Accession: NZ_CP046840 Location: 944860..1092902 Organism: Vibrio cholerae strain F9993 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY07_RS04195 () | 940627..941151 | + | 525 | WP_001226222.1 | inosine/xanthosine triphosphatase | - |
| GPY07_RS04200 () | 941229..941540 | - | 312 | WP_000250616.1 | trp operon repressor | - |
| GPY07_RS04205 () | 941595..943541 | - | 1947 | WP_000197615.1 | murein transglycosylase | - |
| GPY07_RS04210 () | 943903..945570 | + | 1668 | WP_000852865.1 | energy-dependent translational throttle protein EttA | - |
| GPY07_RS04215 () | 945741..946112 | + | 372 | WP_000570783.1 | PilZ domain-containing protein | - |
| GPY07_RS04220 () | 946179..947306 | - | 1128 | WP_000257629.1 | hypothetical protein | VF |
| GPY07_RS04225 () | 947319..948392 | - | 1074 | WP_000747937.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| GPY07_RS04230 () | 948634..950310 | + | 1677 | WP_000364257.1 | hypothetical protein | VF |
| GPY07_RS04235 () | 950320..951033 | + | 714 | WP_000947378.1 | Chemotaxis response regulator protein-glutamate methylesterase | VF |
| GPY07_RS04240 () | 951060..952052 | - | 993 | WP_000529115.1 | beta-N-acetylhexosaminidase | - |
| GPY07_RS04245 () | 952158..953270 | + | 1113 | WP_000840717.1 | anhydro-N-acetylmuramic acid kinase | - |
| GPY07_RS04250 () | 953288..954211 | + | 924 | WP_000180252.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| GPY07_RS04255 () | 954235..956031 | - | 1797 | WP_000544193.1 | sodium:proton antiporter | - |
| GPY07_RS04260 () | 956050..956391 | - | 342 | WP_001883835.1 | DUF2799 domain-containing protein | - |
| GPY07_RS04265 () | 956644..958128 | + | 1485 | WP_000964317.1 | carbon starvation protein A | - |
| GPY07_RS04270 () | 958265..959227 | - | 963 | WP_001883831.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| GPY07_RS04275 () | 959262..959696 | - | 435 | WP_001068088.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| GPY07_RS04280 () | 959859..960374 | - | 516 | WP_000071968.1 | Lipoprotein signal peptidase | VF |
| GPY07_RS04285 () | 960390..963239 | - | 2850 | WP_000006088.1 | isoleucine--tRNA ligase | - |
| GPY07_RS04290 () | 963270..964238 | - | 969 | WP_000420406.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| GPY07_RS04295 () | 964307..965869 | - | 1563 | WP_001911253.1 | murein biosynthesis integral membrane protein MurJ | - |
| GPY07_RS04300 () | 966127..966387 | + | 261 | WP_000002742.1 | 30S ribosomal protein S20 | - |
| GPY07_RS04305 () | 966456..966758 | - | 303 | WP_001053149.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| GPY07_RS04310 () | 966981..967871 | - | 891 | WP_000018876.1 | HTH-type transcriptional regulator ArgP | VF |
| GPY07_RS04315 () | 968266..969414 | + | 1149 | WP_000609761.1 | Na/Pi cotransporter family protein | - |
| GPY07_RS04320 () | 969507..970358 | - | 852 | WP_001250353.1 | thymidylate synthase | - |
| GPY07_RS04325 () | 970368..971183 | - | 816 | WP_001135560.1 | prolipoprotein diacylglyceryl transferase | - |
| GPY07_RS04330 () | 971212..972006 | - | 795 | WP_001019422.1 | sulfite exporter TauE/SafE family protein | - |
| GPY07_RS04335 () | 972016..974262 | - | 2247 | WP_000952226.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| GPY07_RS04340 () | 974265..974783 | - | 519 | WP_001911254.1 | RNA pyrophosphohydrolase | - |
| GPY07_RS04345 () | 975414..976079 | + | 666 | WP_000801223.1 | DNA mismatch repair endonuclease MutH | - |
| GPY07_RS04350 () | 976296..977330 | + | 1035 | WP_001200442.1 | NADP(H)-dependent aldo-keto reductase | - |
| GPY07_RS04355 () | 977368..977619 | - | 252 | WP_001249919.1 | hypothetical protein | - |
| GPY07_RS04365 () | 978197..979531 | - | 1335 | WP_000107102.1 | Anaerobic nitric oxide reductase transcription regulator NorR | VF |
| GPY07_RS04370 () | 979805..981337 | - | 1533 | WP_000128764.1 | lysine--tRNA ligase | - |
| GPY07_RS04380 () | 982636..983949 | - | 1314 | WP_000815019.1 | branched-chain amino acid transport system II carrier protein | - |
| GPY07_RS04385 () | 984258..984980 | + | 723 | WP_000856169.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| GPY07_RS04390 () | 985068..986339 | + | 1272 | WP_000597951.1 | ATP-dependent RNA helicase SrmB | - |
| GPY07_RS04395 () | 986461..988050 | - | 1590 | WP_000013192.1 | peptide chain release factor 3 | - |
| GPY07_RS04400 () | 988307..988953 | - | 647 | Protein_850 | helix-turn-helix domain-containing protein | - |
| GPY07_RS04405 () | 989071..989322 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| GPY07_RS04410 () | 989378..990247 | + | 870 | WP_001205851.1 | hypothetical protein | - |
| GPY07_RS04415 () | 990288..990896 | + | 609 | WP_001918295.1 | hypothetical protein | - |
| GPY07_RS04420 () | 990883..991431 | + | 549 | WP_000848909.1 | lytic transglycosylase domain-containing protein | - |
| GPY07_RS04425 () | 991428..991727 | + | 300 | WP_000210563.1 | flagellar transcriptional regulator FlhD | - |
| GPY07_RS04430 () | 991724..992257 | + | 534 | WP_000566752.1 | hypothetical protein | - |
| GPY07_RS04435 () | 992312..992743 | + | 432 | WP_001883790.1 | hypothetical protein | - |
| GPY07_RS04440 () | 992776..996345 | - | 3570 | WP_000263682.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| GPY07_RS04445 () | 996349..997737 | - | 1389 | WP_000755290.1 | conjugal transfer protein TraH | - |
| GPY07_RS04450 () | 997740..998684 | - | 945 | WP_001260106.1 | thioredoxin family protein | - |
| GPY07_RS04455 () | 999419..1003225 | + | 3807 | WP_000838535.1 | response regulator | - |
| GPY07_RS04460 () | 1003231..1004160 | + | 930 | WP_001271628.1 | Chemotaxis response regulator protein-glutamate methylesterase | VF |
| GPY07_RS04465 () | 1004423..1005130 | - | 708 | WP_000989527.1 | hypothetical protein | - |
| GPY07_RS04470 () | 1005221..1006294 | - | 1074 | WP_001207588.1 | toprim domain-containing protein | - |
| GPY07_RS04475 () | 1006386..1006727 | - | 342 | WP_001014427.1 | hypothetical protein | - |
| GPY07_RS04480 () | 1006727..1007224 | - | 498 | WP_000791199.1 | DNA repair protein RadC | - |
| GPY07_RS04485 () | 1007306..1008961 | - | 1656 | WP_001016321.1 | VWA domain-containing protein | - |
| GPY07_RS04490 () | 1009031..1009471 | - | 441 | WP_001192020.1 | hypothetical protein | - |
| GPY07_RS04495 () | 1009533..1010486 | - | 954 | WP_000027442.1 | DUF3150 domain-containing protein | - |
| GPY07_RS04500 () | 1010585..1011352 | - | 768 | WP_000970192.1 | hypothetical protein | - |
| GPY07_RS04505 () | 1011352..1012311 | - | 960 | WP_000139693.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| GPY07_RS04510 () | 1012521..1013537 | - | 1017 | WP_000862954.1 | YqaJ viral recombinase family protein | - |
| GPY07_RS19365 () | 1013598..1013741 | - | 144 | WP_000167275.1 | hypothetical protein | - |
| GPY07_RS04515 () | 1013823..1014641 | - | 819 | WP_000414661.1 | phage recombination protein Bet | - |
| GPY07_RS04520 () | 1014721..1015140 | - | 420 | WP_000795987.1 | single-stranded DNA-binding protein | - |
| GPY07_RS04525 () | 1015156..1015482 | - | 327 | WP_000455721.1 | hypothetical protein | - |
| GPY07_RS04530 () | 1015850..1016452 | + | 603 | WP_000035786.1 | hypothetical protein | - |
| GPY07_RS04535 () | 1016593..1017276 | + | 684 | WP_001082329.1 | endonuclease | - |
| GPY07_RS04540 () | 1017389..1018453 | + | 1065 | WP_000852158.1 | hypothetical protein | - |
| GPY07_RS04545 () | 1018453..1019538 | + | 1086 | WP_000678781.1 | hypothetical protein | - |
| GPY07_RS04550 () | 1019545..1020225 | + | 681 | WP_000838013.1 | hypothetical protein | - |
| GPY07_RS04555 () | 1020318..1024016 | - | 3699 | WP_000805218.1 | conjugal transfer protein TraN | - |
| GPY07_RS04560 () | 1024019..1025047 | - | 1029 | WP_000735887.1 | TraU family protein | - |
| GPY07_RS04565 () | 1025031..1026155 | - | 1125 | WP_025989328.1 | pilus assembly protein | - |
| GPY07_RS04570 () | 1026166..1026678 | - | 513 | WP_001166556.1 | S26 family signal peptidase | - |
| GPY07_RS04575 () | 1026662..1027009 | - | 348 | WP_001044650.1 | hypothetical protein | - |
| GPY07_RS04580 () | 1027002..1029401 | - | 2400 | WP_000648041.1 | type IV secretion system protein TraC | - |
| GPY07_RS04585 () | 1029401..1030093 | - | 693 | WP_001228924.1 | DsbC family protein | - |
| GPY07_RS04590 () | 1030225..1031163 | - | 939 | WP_000356587.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| GPY07_RS04595 () | 1031156..1031947 | - | 792 | WP_000095577.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| GPY07_RS04600 () | 1032168..1032554 | - | 387 | WP_000180225.1 | hypothetical protein | - |
| GPY07_RS04605 () | 1032551..1033123 | - | 573 | WP_139057167.1 | type IV conjugative transfer system lipoprotein TraV | - |
| GPY07_RS04610 () | 1033198..1034487 | - | 1290 | WP_001883765.1 | TraB/VirB10 family protein | - |
| GPY07_RS04615 () | 1034490..1035386 | - | 897 | WP_032467354.1 | type-F conjugative transfer system secretin TraK | - |
| GPY07_RS04620 () | 1035370..1035996 | - | 627 | WP_000667169.1 | hypothetical protein | - |
| GPY07_RS04625 () | 1035993..1036274 | - | 282 | WP_000433889.1 | type IV conjugative transfer system protein TraL | - |
| GPY07_RS04630 () | 1036455..1036778 | + | 324 | WP_000118545.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GPY07_RS04635 () | 1036775..1037053 | + | 279 | WP_000058216.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| GPY07_RS04640 () | 1037079..1037714 | - | 636 | WP_000033753.1 | DUF4400 domain-containing protein | - |
| GPY07_RS04645 () | 1037701..1038261 | - | 561 | WP_000546510.1 | hypothetical protein | - |
| GPY07_RS04650 () | 1038271..1040091 | - | 1821 | WP_000661887.1 | conjugative transfer system coupling protein TraD | - |
| GPY07_RS04655 () | 1040140..1042290 | - | 2151 | WP_000475917.1 | TraI domain-containing protein | - |
| GPY07_RS04660 () | 1042445..1045096 | - | 2652 | WP_000494309.1 | AAA family ATPase | - |
| GPY07_RS04665 () | 1045140..1047170 | - | 2031 | WP_197708382.1 | protease Lon-related BREX system protein BrxL | - |
| GPY07_RS04670 () | 1047232..1049889 | - | 2658 | WP_001167232.1 | BREX-1 system phosphatase PglZ type A | - |
| GPY07_RS04675 () | 1049889..1053461 | - | 3573 | WP_001090323.1 | BREX-1 system adenine-specific DNA-methyltransferase PglX | - |
| GPY07_RS04680 () | 1053465..1054223 | - | 759 | WP_000605305.1 | hypothetical protein | - |
| GPY07_RS04685 () | 1054220..1055389 | - | 1170 | WP_000595812.1 | AAA family ATPase | - |
| GPY07_RS04690 () | 1055400..1059077 | - | 3678 | WP_000687849.1 | BREX system P-loop protein BrxC | - |
| GPY07_RS04695 () | 1059096..1059680 | - | 585 | WP_000645939.1 | DUF1788 domain-containing protein | - |
| GPY07_RS04700 () | 1059677..1060276 | - | 600 | WP_001080201.1 | DUF1819 family protein | - |
| GPY07_RS04705 () | 1060286..1061212 | - | 927 | WP_001883760.1 | WYL domain-containing protein | - |
| GPY07_RS04710 () | 1061281..1061595 | - | 315 | WP_000284109.1 | hypothetical protein | - |
| GPY07_RS04715 () | 1061669..1062577 | - | 909 | WP_000196207.1 | DNA polymerase III subunit epsilon | - |
| GPY07_RS04720 () | 1062960..1063217 | - | 258 | WP_000182836.1 | hypothetical protein | - |
| GPY07_RS04725 () | 1063216..1063665 | + | 450 | WP_000116661.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| GPY07_RS04730 () | 1063673..1063906 | + | 234 | Protein_917 | DNA polymerase V subunit UmuC | - |
| GPY07_RS04740 () | 1064591..1065898 | - | 1308 | Protein_918 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| GPY07_RS04750 () | 1066369..1067184 | + | 816 | WP_001043260.1 | hypothetical protein | ARG |
| GPY07_RS04755 () | 1067245..1068048 | + | 804 | WP_001082319.1 | hypothetical protein | ARG |
| GPY07_RS04760 () | 1068048..1068884 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| GPY07_RS04765 () | 1068991..1069395 | - | 405 | Protein_922 | IS91 family transposase ISPps1 | Transposase |
| GPY07_RS04770 () | 1069507..1069812 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator HdfR | VF |
| GPY07_RS04775 () | 1069840..1071054 | - | 1215 | WP_000214116.1 | Multidrug resistance protein MdtL | ARG |
| GPY07_RS19370 () | 1071271..1071717 | - | 447 | Protein_925 | DUF3363 domain-containing protein | - |
| GPY07_RS04785 () | 1072186..1072590 | - | 405 | Protein_926 | IS91 family transposase ISVsa3 | Transposase |
| GPY07_RS04790 () | 1072865..1073506 | + | 642 | WP_000429390.1 | dCTP deaminase | - |
| GPY07_RS04795 () | 1073521..1074687 | + | 1167 | WP_000021290.1 | hypothetical protein | - |
| GPY07_RS04800 () | 1074687..1075232 | + | 546 | WP_000356960.1 | hypothetical protein | - |
| GPY07_RS04805 () | 1075246..1075800 | + | 555 | WP_001031075.1 | hypothetical protein | ARG |
| GPY07_RS04815 () | 1076161..1077654 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| GPY07_RS19375 () | 1077766..1077957 | - | 192 | Protein_932 | hypothetical protein | - |
| GPY07_RS04820 () | 1078072..1081050 | - | 2979 | WP_000985631.1 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| GPY07_RS04825 () | 1081188..1081766 | - | 579 | Protein_934 | Tn3 family transposase TnpA_IS3000 | Transposase |
| GPY07_RS04830 () | 1082176..1083213 | + | 1038 | Protein_935 | translesion error-prone DNA polymerase V subunit UmuC | - |
| GPY07_RS04835 () | 1083224..1083667 | - | 444 | WP_000348526.1 | hypothetical protein | - |
| GPY07_RS04840 () | 1084132..1085106 | + | 975 | WP_000497805.1 | ParM/StbA family protein | - |
| GPY07_RS04845 () | 1085109..1085378 | + | 270 | WP_001267005.1 | hypothetical protein | - |
| GPY07_RS04850 () | 1085380..1086621 | + | 1242 | WP_001218617.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| GPY07_RS04855 () | 1086638..1086832 | - | 195 | WP_000127614.1 | DNA-binding protein | - |
| GPY07_RS04860 () | 1087716..1089773 | + | 2058 | WP_000160066.1 | hypothetical protein | VF |
| GPY07_RS04865 () | 1089762..1090211 | - | 450 | WP_000214238.1 | Mycothiol acetyltransferase | VF |
| GPY07_RS04870 () | 1090208..1090615 | - | 408 | WP_000953212.1 | DNA polymerase III subunit psi | - |
| GPY07_RS04875 () | 1090726..1091229 | - | 504 | WP_000908540.1 | N-acetyltransferase | - |
| GPY07_RS04880 () | 1091213..1091740 | - | 528 | WP_000932672.1 | SCP2 domain-containing protein | - |
| GPY07_RS04885 () | 1091973..1094027 | + | 2055 | WP_001111411.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| GPY07_RS04890 () | 1094135..1095148 | + | 1014 | WP_000421327.1 | U32 family peptidase | - |
| GPY07_RS04895 () | 1095160..1096038 | + | 879 | WP_000872504.1 | U32 family peptidase | - |
| GPY07_RS04900 () | 1096091..1097428 | - | 1338 | WP_000981941.1 | sodium-coupled multidrug efflux MATE transporter VcrM | - |
| GPY07_RS04905 () | 1097475..1097882 | - | 408 | WP_000887847.1 | MarR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|