MGE detailed information
MGE type: Prophage MGE length: 99070 bp
Accession: NZ_CP046527 Location: 4642034..4741103 Organism: Escherichia coli strain RM19259 Replicon: chromosome
Accession: NZ_CP046527 Location: 4642034..4741103 Organism: Escherichia coli strain RM19259 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GN312_RS23055 () | 4638548..4639294 | + | 747 | WP_000636568.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| GN312_RS23060 () | 4639383..4640069 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| GN312_RS23065 () | 4640246..4640449 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| GN312_RS23070 () | 4640485..4641945 | - | 1461 | WP_000527769.1 | mannitol dehydrogenase family protein | - |
| GN312_RS23075 () | 4642034..4643317 | - | 1284 | Protein_4397 | MHS family MFS transporter YdfJ | - |
| GN312_RS23080 () | 4643449..4643691 | + | 243 | WP_001120551.1 | DinI-like family protein | - |
| GN312_RS23085 () | 4643853..4644494 | - | 642 | WP_001143804.1 | hypothetical protein | VF |
| GN312_RS23090 () | 4644576..4645205 | - | 630 | WP_001303500.1 | hypothetical protein | VF |
| GN312_RS23095 () | 4645278..4645853 | - | 576 | WP_001131658.1 | hypothetical protein | VF |
| GN312_RS23100 () | 4645967..4646236 | - | 270 | WP_001023407.1 | phage tail fiber C-terminal domain-containing protein | - |
| GN312_RS23105 () | 4646238..4647551 | - | 1314 | WP_000268848.1 | ISNCY family transposase KIS | Transposase |
| GN312_RS23110 () | 4647616..4648215 | - | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| GN312_RS23115 () | 4648283..4650850 | - | 2568 | Protein_4405 | host specificity protein J | - |
| GN312_RS23120 () | 4650850..4652361 | - | 1512 | Protein_4406 | host specificity protein J | - |
| GN312_RS23125 () | 4652703..4653335 | - | 633 | WP_050439450.1 | tail assembly protein | - |
| GN312_RS23130 () | 4653281..4654024 | - | 744 | WP_000194720.1 | C40 family peptidase | - |
| GN312_RS23135 () | 4654035..4654733 | - | 699 | WP_001179510.1 | phage minor tail protein L | - |
| GN312_RS23140 () | 4654733..4655074 | - | 342 | WP_000807954.1 | phage tail protein | - |
| GN312_RS23145 () | 4655067..4658309 | - | 3243 | WP_000212925.1 | phage tail tape measure protein | - |
| GN312_RS23150 () | 4658362..4658571 | - | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| GN312_RS23155 () | 4658667..4659041 | - | 375 | WP_001030063.1 | phage tail assembly chaperone | - |
| GN312_RS23160 () | 4659047..4659763 | - | 717 | WP_001275508.1 | tail protein | - |
| GN312_RS23165 () | 4659822..4660166 | - | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| GN312_RS23170 () | 4660163..4660609 | - | 447 | WP_000573374.1 | HK97 gp10 family phage protein | - |
| GN312_RS23175 () | 4660606..4660956 | - | 351 | WP_001007901.1 | phage head closure protein | - |
| GN312_RS23180 () | 4660966..4661292 | - | 327 | WP_000126026.1 | head-tail connector protein | - |
| GN312_RS23185 () | 4661289..4663387 | - | 2099 | Protein_4419 | phage portal protein | - |
| GN312_RS23190 () | 4663333..4663554 | - | 222 | WP_001063023.1 | hypothetical protein | - |
| GN312_RS23195 () | 4663599..4664195 | - | 597 | Protein_4421 | phage major capsid protein | - |
| GN312_RS23200 () | 4664098..4664505 | - | 408 | WP_000731239.1 | YdfR family protein | - |
| GN312_RS23205 () | 4664510..4664725 | - | 216 | WP_024180155.1 | class II holin family protein | - |
| GN312_RS23210 () | 4665164..4667014 | - | 1851 | WP_000023184.1 | SASA family carbohydrate esterase | - |
| GN312_RS23215 () | 4667240..4667495 | - | 256 | Protein_4425 | DUF3927 family protein | - |
| GN312_RS23220 () | 4667492..4667923 | - | 432 | WP_001302123.1 | tellurite resistance protein | - |
| GN312_RS23235 () | 4668374..4669087 | - | 714 | WP_000301797.1 | helix-turn-helix domain-containing protein | - |
| GN312_RS23240 () | 4669223..4669420 | - | 198 | WP_000917763.1 | hypothetical protein | - |
| GN312_RS23245 () | 4669645..4670199 | - | 555 | WP_000640035.1 | DUF1133 family protein | - |
| GN312_RS23250 () | 4670262..4670567 | - | 306 | WP_001217444.1 | RusA family crossover junction endodeoxyribonuclease | - |
| GN312_RS23255 () | 4670580..4671629 | - | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| GN312_RS23260 () | 4671631..4671903 | - | 273 | WP_000191872.1 | hypothetical protein | - |
| GN312_RS23265 () | 4672025..4672369 | - | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| GN312_RS23270 () | 4672489..4672644 | - | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| GN312_RS23275 () | 4672935..4673492 | - | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| GN312_RS23280 () | 4673494..4673712 | - | 219 | WP_000683609.1 | DUF4014 family protein | - |
| GN312_RS23285 () | 4673840..4674151 | - | 312 | WP_001289673.1 | hypothetical protein | - |
| GN312_RS23290 () | 4674144..4674371 | - | 228 | WP_000699809.1 | hypothetical protein | - |
| GN312_RS23295 () | 4674368..4674649 | - | 282 | WP_000603384.1 | DNA-binding protein | - |
| GN312_RS23300 () | 4674682..4675398 | - | 717 | WP_000450627.1 | DUF1627 domain-containing protein | - |
| GN312_RS23305 () | 4675432..4675893 | - | 462 | WP_000139447.1 | replication protein | - |
| GN312_RS23310 () | 4675886..4676929 | - | 1044 | WP_001262402.1 | hypothetical protein | - |
| GN312_RS23315 () | 4676998..4677423 | - | 426 | WP_000693878.1 | Rha family transcriptional regulator | - |
| GN312_RS23320 () | 4677407..4677649 | - | 243 | WP_000747948.1 | hypothetical protein | - |
| GN312_RS23325 () | 4678041..4678379 | + | 339 | WP_001416688.1 | peptidase S24 | - |
| GN312_RS23330 () | 4678672..4678824 | + | 153 | WP_000380316.1 | DUF1391 family protein | - |
| GN312_RS23335 () | 4678836..4679474 | + | 639 | WP_000394548.1 | hypothetical protein | - |
| GN312_RS23340 () | 4679475..4679684 | - | 210 | WP_001133037.1 | hypothetical protein | - |
| GN312_RS23350 () | 4680249..4680437 | + | 189 | WP_000449175.1 | cell division inhibitor | - |
| GN312_RS23355 () | 4680434..4680622 | + | 189 | WP_000199475.1 | DUF1482 family protein | - |
| GN312_RS23360 () | 4680715..4681953 | + | 1239 | Protein_4451 | exonuclease | - |
| GN312_RS23365 () | 4681941..4682492 | + | 552 | Protein_4452 | Putative defective protein IntQ ; Integrase | Integrase |
| GN312_RS23370 () | 4682670..4682912 | + | 243 | WP_001120551.1 | DinI-like family protein | - |
| GN312_RS23375 () | 4682962..4683780 | - | 819 | Protein_4454 | IS256 family transposase IS1414 | Transposase |
| GN312_RS23380 () | 4683875..4684255 | + | 381 | WP_001171540.1 | IS66 family transposase ISEc8 | Transposase |
| GN312_RS23385 () | 4684252..4684599 | + | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| GN312_RS23390 () | 4684649..4686187 | + | 1539 | WP_000998051.1 | IS66 family transposase ISEc8 | Transposase |
| GN312_RS23395 () | 4686225..4686620 | - | 396 | Protein_4458 | IS256 family transposase ISEic2 | Transposase |
| GN312_RS23400 () | 4686770..4687420 | - | 651 | WP_001121225.1 | hypothetical protein | VF |
| GN312_RS23405 () | 4688131..4688706 | - | 576 | WP_001131642.1 | hypothetical protein | VF |
| GN312_RS23410 () | 4688820..4689089 | - | 270 | WP_001023362.1 | phage tail fiber C-terminal domain-containing protein | - |
| GN312_RS23415 () | 4689091..4690314 | - | 1224 | WP_000268860.1 | prophage tail fiber N-terminal domain-containing protein | - |
| GN312_RS23420 () | 4690379..4690978 | - | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| GN312_RS23430 () | 4691046..4694524 | - | 3479 | Protein_4464 | host specificity protein J | - |
| GN312_RS23435 () | 4694712..4695149 | - | 438 | WP_001179509.1 | phage minor tail protein L | - |
| GN312_RS23440 () | 4695149..4695490 | - | 342 | WP_000807954.1 | phage tail protein | - |
| GN312_RS23445 () | 4695483..4698725 | - | 3243 | WP_000212818.1 | phage tail tape measure protein | - |
| GN312_RS23450 () | 4698774..4698983 | - | 210 | WP_001453746.1 | DUF4035 domain-containing protein | - |
| GN312_RS23455 () | 4699079..4699453 | - | 375 | WP_000710952.1 | phage tail assembly chaperone | - |
| GN312_RS23460 () | 4699468..4700184 | - | 717 | WP_001275434.1 | immunoglobulin domain-containing protein | - |
| GN312_RS23465 () | 4700250..4700594 | - | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| GN312_RS23470 () | 4700591..4701037 | - | 447 | WP_000573374.1 | HK97 gp10 family phage protein | - |
| GN312_RS23475 () | 4701034..4701384 | - | 351 | WP_001007905.1 | phage head closure protein | - |
| GN312_RS23480 () | 4701394..4701720 | - | 327 | WP_000125988.1 | head-tail connector protein | - |
| GN312_RS23485 () | 4701723..4704302 | - | 2580 | WP_000267295.1 | phage portal protein | - |
| GN312_RS23490 () | 4704248..4704469 | - | 222 | WP_001063099.1 | hypothetical protein | - |
| GN312_RS23495 () | 4704514..4706451 | - | 1938 | WP_000173030.1 | phage major capsid protein | - |
| GN312_RS23500 () | 4706515..4708176 | - | 1662 | WP_001301438.1 | terminase large subunit | - |
| GN312_RS23505 () | 4708173..4708736 | - | 564 | WP_000958416.1 | terminase small subunit | - |
| GN312_RS23510 () | 4709030..4709396 | - | 367 | Protein_4480 | HNH endonuclease | - |
| GN312_RS23515 () | 4709438..4709665 | + | 228 | WP_000095736.1 | DUF3950 domain-containing protein | - |
| GN312_RS23520 () | 4710090..4710275 | - | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| GN312_RS23530 () | 4710533..4710649 | - | 117 | WP_000539789.1 | hypothetical protein | - |
| GN312_RS23535 () | 4710649..4711218 | - | 570 | WP_001056806.1 | hypothetical protein | - |
| GN312_RS23540 () | 4711489..4712022 | - | 534 | WP_000992137.1 | lysozyme | - |
| GN312_RS23545 () | 4712073..4712417 | - | 345 | WP_000731241.1 | YdfR family protein | - |
| GN312_RS23550 () | 4712422..4712637 | - | 216 | WP_024180155.1 | class II holin family protein | - |
| GN312_RS23555 () | 4713076..4714926 | - | 1851 | WP_000023202.1 | SASA family carbohydrate esterase | - |
| GN312_RS23560 () | 4715153..4715408 | - | 256 | Protein_4489 | DUF3927 family protein | - |
| GN312_RS23565 () | 4715405..4715833 | - | 429 | WP_001303509.1 | tellurite resistance protein | - |
| GN312_RS23585 () | 4716470..4717159 | - | 690 | WP_001059381.1 | antiterminator | - |
| GN312_RS23590 () | 4717156..4717515 | - | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| GN312_RS23595 () | 4717528..4718577 | - | 1050 | WP_001265161.1 | DUF968 domain-containing protein | - |
| GN312_RS23600 () | 4718579..4718857 | - | 279 | WP_012779366.1 | hypothetical protein | - |
| GN312_RS23605 () | 4719025..4719180 | - | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| GN312_RS23610 () | 4719426..4719530 | - | 105 | WP_001278450.1 | hypothetical protein | - |
| GN312_RS23615 () | 4719646..4720230 | - | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| GN312_RS23620 () | 4720287..4720682 | - | 396 | WP_001118159.1 | DUF977 family protein | - |
| GN312_RS23625 () | 4720698..4721467 | - | 770 | Protein_4499 | DUF1627 domain-containing protein | - |
| GN312_RS23630 () | 4721493..4722233 | - | 741 | WP_000788938.1 | ATP-binding protein | - |
| GN312_RS23635 () | 4722240..4723202 | - | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| GN312_RS23640 () | 4723225..4723650 | - | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| GN312_RS23645 () | 4723647..4723949 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| GN312_RS23650 () | 4724047..4724418 | + | 372 | WP_001169686.1 | hypothetical protein | - |
| GN312_RS23655 () | 4724439..4724630 | + | 192 | WP_001302048.1 | hypothetical protein | - |
| GN312_RS23660 () | 4724632..4724910 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GN312_RS23665 () | 4725263..4725562 | + | 300 | WP_001240334.1 | hypothetical protein | - |
| GN312_RS23670 () | 4725634..4725852 | + | 219 | WP_001171930.1 | hypothetical protein | - |
| GN312_RS23680 () | 4726421..4726609 | + | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| GN312_RS23685 () | 4726606..4726797 | + | 192 | WP_001090200.1 | DUF1482 family protein | - |
| GN312_RS23690 () | 4726890..4727975 | + | 1086 | Protein_4511 | exonuclease | - |
| GN312_RS23695 () | 4728026..4729239 | + | 1214 | WP_162829202.1 | IS3 family transposase IS1203 | Transposase |
| GN312_RS23700 () | 4729280..4730674 | + | 1395 | Protein_4513 | 3'-5' exoribonuclease | - |
| GN312_RS23705 () | 4730747..4730998 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| GN312_RS23710 () | 4731033..4731217 | + | 185 | Protein_4515 | DUF3596 domain-containing protein | - |
| GN312_RS23720 () | 4731987..4732313 | - | 327 | WP_001302046.1 | YnfA family protein | - |
| GN312_RS23725 () | 4732448..4732789 | + | 342 | WP_000705189.1 | DUF1283 family protein | - |
| GN312_RS23730 () | 4732824..4733384 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| GN312_RS23735 () | 4733387..4734097 | - | 711 | WP_001303515.1 | YnfC family lipoprotein | - |
| GN312_RS23740 () | 4734205..4734510 | + | 306 | WP_000778147.1 | DUF1161 domain-containing protein | - |
| GN312_RS23745 () | 4734709..4737135 | + | 2427 | WP_000041704.1 | dimethyl sulfoxide reductase subunit A | - |
| GN312_RS23750 () | 4737196..4739619 | + | 2424 | WP_001414236.1 | dimethyl sulfoxide reductase subunit A | - |
| GN312_RS23755 () | 4739630..4740247 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| GN312_RS23760 () | 4740249..4741103 | + | 855 | WP_000526515.1 | dimethyl sulfoxide reductase anchor subunit | - |
| GN312_RS23765 () | 4741146..4741760 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| GN312_RS23770 () | 4741918..4743210 | + | 1293 | WP_071525082.1 | voltage-gated ClC-type chloride channel ClcB | - |
| GN312_RS23775 () | 4743163..4743858 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| GN312_RS23780 () | 4743983..4745203 | - | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|