MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 113779 bp
Accession: NZ_CP046376 Location: 160473..274251 Organism: Pectobacterium parmentieri strain HC Replicon: chromosome
Accession: NZ_CP046376 Location: 160473..274251 Organism: Pectobacterium parmentieri strain HC Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GMW39_RS00680 () | 156335..157588 | + | 1254 | WP_025920014.1 | glutamate-5-semialdehyde dehydrogenase | - |
| GMW39_RS00685 () | 157707..159773 | - | 2067 | WP_033071878.1 | multicopper oxidase domain-containing protein | - |
| GMW39_RS00695 () | 160532..161695 | - | 1164 | WP_161545371.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| GMW39_RS00700 () | 162247..162510 | - | 264 | WP_161545372.1 | hypothetical protein | - |
| GMW39_RS00705 () | 162717..163145 | - | 429 | WP_161545373.1 | hypothetical protein | - |
| GMW39_RS00710 () | 163148..163426 | - | 279 | WP_198482496.1 | hypothetical protein | - |
| GMW39_RS00715 () | 163441..164001 | - | 561 | WP_161545375.1 | HNH endonuclease | - |
| GMW39_RS00720 () | 163998..164432 | - | 435 | WP_161545376.1 | keratin | - |
| GMW39_RS00725 () | 164429..165346 | - | 918 | WP_161545377.1 | DNA cytosine methyltransferase | - |
| GMW39_RS00730 () | 165343..165765 | - | 423 | WP_161545378.1 | hypothetical protein | - |
| GMW39_RS00735 () | 165755..165949 | - | 195 | WP_161545379.1 | hypothetical protein | - |
| GMW39_RS00740 () | 165942..166130 | - | 189 | WP_161545380.1 | ANR family transcriptional regulator | - |
| GMW39_RS00745 () | 166133..166465 | - | 333 | WP_161545381.1 | hypothetical protein | - |
| GMW39_RS00750 () | 166538..166990 | - | 453 | WP_161545382.1 | single-stranded DNA-binding protein | - |
| GMW39_RS00755 () | 166991..167617 | - | 627 | WP_161545383.1 | ERF family protein | - |
| GMW39_RS00760 () | 168017..168265 | - | 249 | WP_202620835.1 | DUF551 domain-containing protein | - |
| GMW39_RS00765 () | 168769..169449 | - | 681 | WP_161545385.1 | hypothetical protein | VF |
| GMW39_RS00770 () | 169522..169884 | - | 363 | WP_161545386.1 | hypothetical protein | - |
| GMW39_RS00775 () | 169917..170198 | - | 282 | WP_161545387.1 | hypothetical protein | - |
| GMW39_RS00780 () | 170241..170429 | - | 189 | WP_161545388.1 | hypothetical protein | - |
| GMW39_RS00785 () | 170432..170659 | - | 228 | WP_161545389.1 | hypothetical protein | - |
| GMW39_RS00790 () | 170716..170925 | - | 210 | WP_121266038.1 | hypothetical protein | - |
| GMW39_RS00795 () | 171362..172075 | - | 714 | WP_121266036.1 | LexA family transcriptional regulator | - |
| GMW39_RS00800 () | 172179..172367 | + | 189 | WP_010281902.1 | hypothetical protein | - |
| GMW39_RS00805 () | 172473..172766 | + | 294 | WP_161545390.1 | hypothetical protein | - |
| GMW39_RS00810 () | 172791..173450 | + | 660 | WP_161545391.1 | morphogenetic protein | - |
| GMW39_RS00815 () | 173524..174573 | + | 1050 | WP_161545392.1 | HNH endonuclease | - |
| GMW39_RS00820 () | 174575..175423 | + | 849 | WP_161545393.1 | IS21 family transposase IS1600 | Transposase |
| GMW39_RS00825 () | 175420..175623 | + | 204 | WP_161545394.1 | hypothetical protein | - |
| GMW39_RS00830 () | 175653..175949 | + | 297 | WP_161545395.1 | hypothetical protein | - |
| GMW39_RS24285 () | 176259..176546 | + | 288 | WP_202620836.1 | hypothetical protein | - |
| GMW39_RS00835 () | 176543..176857 | + | 315 | WP_202620837.1 | hypothetical protein | - |
| GMW39_RS00840 () | 176866..177315 | + | 450 | WP_161545396.1 | DUF1367 family protein | - |
| GMW39_RS00845 () | 177621..177800 | + | 180 | WP_161545397.1 | hypothetical protein | - |
| GMW39_RS00850 () | 177793..178434 | + | 642 | WP_161545398.1 | recombination protein NinG | - |
| GMW39_RS00855 () | 178753..179562 | + | 810 | WP_161545399.1 | antitermination protein | - |
| GMW39_RS00860 () | 179816..180094 | - | 279 | WP_161545400.1 | hypothetical protein | - |
| GMW39_RS00865 () | 180091..180279 | - | 189 | WP_109463512.1 | hypothetical protein | - |
| GMW39_RS00870 () | 180284..180550 | - | 267 | WP_161545401.1 | hypothetical protein | - |
| GMW39_RS00875 () | 180684..180869 | + | 186 | WP_161545402.1 | phage holin family protein | - |
| GMW39_RS00880 () | 180866..181420 | + | 555 | WP_161545403.1 | lysozyme | - |
| GMW39_RS00885 () | 181399..181818 | + | 420 | WP_161545404.1 | lysis protein | - |
| GMW39_RS00890 () | 181796..182008 | - | 213 | WP_161545405.1 | hypothetical protein | - |
| GMW39_RS00895 () | 182008..182211 | - | 204 | WP_161545406.1 | hypothetical protein | - |
| GMW39_RS00900 () | 182619..183005 | + | 387 | WP_161545407.1 | hypothetical protein | - |
| GMW39_RS00905 () | 183002..183235 | + | 234 | WP_161545408.1 | DUF2560 family protein | - |
| GMW39_RS00910 () | 183246..183782 | + | 537 | WP_161545409.1 | terminase small subunit | - |
| GMW39_RS00915 () | 183785..185233 | + | 1449 | WP_161545410.1 | terminase | - |
| GMW39_RS00920 () | 185233..187401 | + | 2169 | WP_109463716.1 | portal protein | - |
| GMW39_RS00925 () | 187415..188323 | + | 909 | WP_109463715.1 | scaffolding protein | - |
| GMW39_RS00930 () | 188323..189606 | + | 1284 | WP_109463714.1 | coat protein | - |
| GMW39_RS00935 () | 189649..189909 | + | 261 | WP_146190901.1 | hypothetical protein | - |
| GMW39_RS00940 () | 189893..190384 | + | 492 | WP_109463713.1 | packaged DNA stabilization gp4 family protein | - |
| GMW39_RS00945 () | 190356..191141 | + | 786 | WP_161545411.1 | hypothetical protein | - |
| GMW39_RS00950 () | 191723..191911 | + | 189 | WP_000127615.1 | hypothetical protein | - |
| GMW39_RS00955 () | 192053..194071 | + | 2019 | WP_138558354.1 | ATP-binding protein | - |
| GMW39_RS00960 () | 194207..195448 | - | 1242 | WP_063527362.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| GMW39_RS24290 () | 195450..195719 | - | 270 | WP_063527361.1 | hypothetical protein | - |
| GMW39_RS00965 () | 195722..196696 | - | 975 | WP_161545412.1 | ParM/StbA family protein | - |
| GMW39_RS00970 () | 197161..197604 | + | 444 | WP_024024504.1 | hypothetical protein | - |
| GMW39_RS00975 () | 197728..198393 | + | 666 | WP_161545413.1 | hypothetical protein | VF |
| GMW39_RS00980 () | 198594..199862 | - | 1269 | WP_161545414.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| GMW39_RS00985 () | 199870..200319 | - | 450 | WP_011788455.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| GMW39_RS00990 () | 200959..201864 | + | 906 | WP_011788456.1 | DNA polymerase III subunit epsilon | - |
| GMW39_RS00995 () | 201952..202251 | + | 300 | WP_011788457.1 | hypothetical protein | - |
| GMW39_RS01000 () | 202573..203496 | + | 924 | WP_011788458.1 | WYL domain-containing protein | - |
| GMW39_RS01005 () | 203610..206033 | + | 2424 | WP_011788459.1 | type I restriction-modification system subunit M | - |
| GMW39_RS01010 () | 206040..206813 | + | 774 | WP_202620838.1 | restriction endonuclease subunit S | - |
| GMW39_RS01015 () | 206935..207780 | - | 846 | WP_088213016.1 | AraC family transcriptional regulator | - |
| GMW39_RS01020 () | 207902..208435 | + | 534 | WP_061517360.1 | carboxymuconolactone decarboxylase family protein | - |
| GMW39_RS01025 () | 208795..210945 | + | 2151 | WP_161545415.1 | TraI domain-containing protein | - |
| GMW39_RS01030 () | 210993..212813 | + | 1821 | WP_161545416.1 | conjugative transfer system coupling protein TraD | - |
| GMW39_RS01035 () | 212823..213383 | + | 561 | WP_145573973.1 | conjugative transfer protein | - |
| GMW39_RS01040 () | 213370..214006 | + | 637 | Protein_202 | DUF4400 domain-containing protein | - |
| GMW39_RS01045 () | 214032..214310 | - | 279 | WP_000058216.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| GMW39_RS01050 () | 214307..214630 | - | 324 | WP_001896384.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GMW39_RS01055 () | 214811..215092 | + | 282 | WP_000433889.1 | type IV conjugative transfer system protein TraL | - |
| GMW39_RS01060 () | 215089..215715 | + | 627 | WP_000667170.1 | hypothetical protein | - |
| GMW39_RS01065 () | 215699..216595 | + | 897 | WP_161546444.1 | type-F conjugative transfer system secretin TraK | - |
| GMW39_RS01070 () | 216598..217887 | + | 1290 | WP_161545417.1 | TraB/VirB10 family protein | - |
| GMW39_RS01075 () | 217962..218534 | + | 573 | WP_161545418.1 | type IV conjugative transfer system lipoprotein TraV | - |
| GMW39_RS01080 () | 218531..218917 | + | 387 | WP_161545419.1 | hypothetical protein | - |
| GMW39_RS01085 () | 219137..219928 | + | 792 | WP_000095577.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| GMW39_RS01090 () | 219921..220859 | + | 939 | WP_008844785.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| GMW39_RS01095 () | 220991..221683 | + | 693 | WP_001228924.1 | DsbC family protein | - |
| GMW39_RS01100 () | 221683..224082 | + | 2400 | WP_161545420.1 | type IV secretion system protein TraC | - |
| GMW39_RS01105 () | 224075..224422 | + | 348 | WP_011788500.1 | hypothetical protein | - |
| GMW39_RS01110 () | 224406..224918 | + | 513 | WP_193021830.1 | S26 family signal peptidase | - |
| GMW39_RS01115 () | 224929..226053 | + | 1125 | WP_161546445.1 | pilus assembly protein | - |
| GMW39_RS01120 () | 226037..227065 | + | 1029 | WP_161545421.1 | TraU family protein | - |
| GMW39_RS01125 () | 227068..230760 | + | 3693 | WP_161545422.1 | conjugal transfer protein TraN | - |
| GMW39_RS01130 () | 230851..233517 | - | 2667 | WP_202620839.1 | AAA family ATPase | - |
| GMW39_RS01135 () | 233689..233859 | - | 171 | Protein_221 | endonuclease | - |
| GMW39_RS01140 () | 233946..234353 | - | 408 | WP_004364961.1 | Cd(II)/Pb(II)-responsive transcriptional regulator | - |
| GMW39_RS01145 () | 234450..235346 | + | 897 | WP_161545423.1 | cation transporter | - |
| GMW39_RS01150 () | 235350..235862 | + | 513 | WP_004863699.1 | Lipoprotein signal peptidase | VF |
| GMW39_RS01155 () | 235884..236615 | + | 732 | Protein_225 | ISL3 family transposase ISPpu12 | Transposase |
| GMW39_RS01160 () | 236841..237362 | - | 522 | Protein_226 | endonuclease | - |
| GMW39_RS01165 () | 237471..238073 | - | 603 | WP_161545424.1 | hypothetical protein | - |
| GMW39_RS01170 () | 238442..238768 | + | 327 | WP_161545425.1 | plasmid-related protein | - |
| GMW39_RS01175 () | 238784..239203 | + | 420 | WP_025610728.1 | single-stranded DNA-binding protein | - |
| GMW39_RS01180 () | 239283..240102 | + | 820 | Protein_230 | phage recombination protein Bet | - |
| GMW39_RS24295 () | 240185..240328 | + | 144 | WP_202620840.1 | hypothetical protein | - |
| GMW39_RS01185 () | 240389..241405 | + | 1017 | WP_161545426.1 | YqaJ viral recombinase family protein | - |
| GMW39_RS01190 () | 241615..242574 | + | 960 | WP_000139695.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| GMW39_RS01195 () | 242574..243341 | + | 768 | WP_161545427.1 | hypothetical protein | - |
| GMW39_RS01200 () | 243440..244393 | + | 954 | WP_000027441.1 | DUF3150 domain-containing protein | - |
| GMW39_RS01205 () | 244455..244895 | + | 441 | WP_024015929.1 | hypothetical protein | - |
| GMW39_RS01210 () | 244965..246620 | + | 1656 | WP_161545428.1 | VWA domain-containing protein | - |
| GMW39_RS01215 () | 246704..247201 | + | 498 | WP_025610838.1 | DNA repair protein RadC | - |
| GMW39_RS01220 () | 247201..247542 | + | 342 | WP_022614434.1 | hypothetical protein | - |
| GMW39_RS01225 () | 247632..248705 | + | 1074 | WP_084998248.1 | toprim domain-containing protein | - |
| GMW39_RS01230 () | 248794..249501 | + | 708 | WP_161545429.1 | hypothetical protein | - |
| GMW39_RS01235 () | 249743..250252 | - | 510 | WP_161545430.1 | hypothetical protein | - |
| GMW39_RS01240 () | 250316..251107 | - | 792 | WP_001206316.1 | hypothetical protein | ARG |
| GMW39_RS01245 () | 251384..252343 | + | 960 | WP_161545431.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| GMW39_RS01250 () | 252600..253544 | + | 945 | WP_161545432.1 | thioredoxin family protein | - |
| GMW39_RS01255 () | 253547..254935 | + | 1389 | WP_161545433.1 | conjugal transfer protein TraH | - |
| GMW39_RS01260 () | 254939..258508 | + | 3570 | WP_161545434.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| GMW39_RS01265 () | 258541..258973 | - | 433 | Protein_248 | hypothetical protein | - |
| GMW39_RS01270 () | 259031..259564 | - | 534 | WP_000566755.1 | hypothetical protein | - |
| GMW39_RS01275 () | 259561..259860 | - | 300 | WP_000210563.1 | flagellar transcriptional regulator FlhD | - |
| GMW39_RS01280 () | 259857..260405 | - | 549 | WP_161545435.1 | lytic transglycosylase domain-containing protein | - |
| GMW39_RS01285 () | 260392..261000 | - | 609 | WP_171345854.1 | hypothetical protein | - |
| GMW39_RS01290 () | 261041..261911 | - | 871 | Protein_253 | hypothetical protein | - |
| GMW39_RS01295 () | 261967..262218 | - | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| GMW39_RS01300 () | 262336..262983 | + | 648 | WP_000854920.1 | LexA family transcriptional regulator | - |
| GMW39_RS01305 () | 263282..263965 | + | 684 | Protein_256 | hypothetical protein | - |
| GMW39_RS01310 () | 263965..264642 | + | 678 | WP_161545436.1 | hypothetical protein | - |
| GMW39_RS01315 () | 264652..265044 | + | 393 | WP_161545437.1 | hypothetical protein | - |
| GMW39_RS01320 () | 265028..265693 | + | 666 | WP_161545438.1 | DNA transfer protein | - |
| GMW39_RS01325 () | 265693..267096 | + | 1404 | WP_161545439.1 | phage DNA ejection protein | - |
| GMW39_RS01330 () | 267381..269126 | + | 1746 | WP_109463724.1 | injection protein | - |
| GMW39_RS01335 () | 269136..269315 | + | 180 | WP_109463707.1 | hypothetical protein | - |
| GMW39_RS01340 () | 269528..269749 | - | 222 | WP_109463706.1 | hypothetical protein | - |
| GMW39_RS01345 () | 269945..270481 | - | 537 | WP_109463705.1 | ATP-dependent Clp protease proteolytic subunit | - |
| GMW39_RS01350 () | 270481..270735 | - | 255 | WP_109463704.1 | Arc family DNA-binding protein | - |
| GMW39_RS01355 () | 270823..270981 | + | 159 | WP_109463703.1 | Arc family DNA-binding protein | - |
| GMW39_RS01360 () | 271267..272031 | + | 765 | WP_109463701.1 | hypothetical protein | - |
| GMW39_RS01365 () | 272124..272501 | + | 378 | Protein_268 | phage tail protein | - |
| GMW39_RS01370 () | 274416..275630 | + | 1215 | WP_161545440.1 | tyrosine-type recombinase/integrase | - |
| GMW39_RS01375 () | 275775..276833 | + | 1059 | WP_161545441.1 | hypothetical protein | - |
| GMW39_RS01380 () | 276980..277177 | + | 198 | WP_025920010.1 | AlpA family transcriptional regulator | - |
| GMW39_RS01385 () | 277177..277608 | + | 432 | WP_014701103.1 | hypothetical protein | - |
| GMW39_RS01390 () | 277622..278224 | + | 603 | WP_014701102.1 | hypothetical protein | - |
| GMW39_RS01395 () | 278283..278398 | + | 116 | Protein_274 | DUF4222 domain-containing protein | - |
| GMW39_RS01400 () | 278591..279037 | - | 447 | Protein_275 | DUF4102 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|