MGE detailed information
MGE type: Conjugative plasmid MGE length: 80987 bp
Accession: NZ_CP045934 Location: 1..80987 Organism: Shigella sonnei strain AUSMDU00010534 Replicon: plasmid pAUSMDU00010534_02
Accession: NZ_CP045934 Location: 1..80987 Organism: Shigella sonnei strain AUSMDU00010534 Replicon: plasmid pAUSMDU00010534_02
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJE15_RS24720 (1) | 1..858 | + | 858 | WP_016240488.1 | incFII family plasmid replication initiator RepA | - |
| GJE15_RS24725 (1796) | 1796..2449 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| GJE15_RS24730 (2542) | 2542..2799 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| GJE15_RS24735 (2732) | 2732..3133 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| GJE15_RS24740 (3418) | 3418..4176 | + | 759 | WP_252997077.1 | DUF262 domain-containing protein | - |
| GJE15_RS24745 (4277) | 4277..5257 | - | 981 | WP_000019473.1 | IS5 family transposase ISKpn26 | Transposase |
| GJE15_RS24750 (5311) | 5311..5928 | + | 618 | WP_252997078.1 | hypothetical protein | - |
| GJE15_RS24755 (5957) | 5957..6055 | + | 99 | Protein_7 | IS1 family transposase | - |
| GJE15_RS24760 (6205) | 6205..7065 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| GJE15_RS24765 (7364) | 7364..8068 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| GJE15_RS24770 (8267) | 8267..8719 | - | 453 | WP_000929141.1 | DUF3330 domain-containing protein | - |
| GJE15_RS24780 (8820) | 8820..9833 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| GJE15_RS24785 (9991) | 9991..10464 | + | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| GJE15_RS24790 (10595) | 10595..11383 | + | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| GJE15_RS24795 (11589) | 11589..11936 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| GJE15_RS24800 (11930) | 11930..12769 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| GJE15_RS24805 (12897) | 12897..13100 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| GJE15_RS24810 (13256) | 13256..14461 | + | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| GJE15_RS24815 (14472) | 14472..14777 | + | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| GJE15_RS26330 (14821) | 14821..14886 | + | 66 | Protein_19 | EAL domain-containing protein | - |
| GJE15_RS24820 (15004) | 15004..15768 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| GJE15_RS24825 (16261) | 16261..16845 | - | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| GJE15_RS24830 (16845) | 16845..18083 | - | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| GJE15_RS24835 (18080) | 18080..18985 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
| GJE15_RS24840 (19107) | 19107..19811 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| GJE15_RS24845 (19946) | 19946..20041 | + | 96 | WP_013362819.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| GJE15_RS24850 (20167) | 20167..20904 | + | 738 | WP_013362818.1 | rRNA adenine N-6-methyltransferase | ARG |
| GJE15_RS24860 (21667) | 21667..22364 | + | 698 | WP_094096600.1 | IS1 family transposase IS1A | Transposase |
| GJE15_RS24865 (23813) | 23813..24047 | + | 235 | Protein_28 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GJE15_RS24870 (24175) | 24175..24456 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| GJE15_RS24875 (24579) | 24579..24929 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| GJE15_RS24880 (24932) | 24932..25894 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| GJE15_RS24885 (26041) | 26041..26334 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| GJE15_RS24890 (26411) | 26411..27094 | + | 684 | WP_000085883.1 | DNA methylase | - |
| GJE15_RS24895 (27095) | 27095..27316 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| GJE15_RS24900 (27330) | 27330..27764 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| GJE15_RS26335 (27815) | 27815..28591 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| GJE15_RS24915 (29009) | 29009..29434 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| GJE15_RS24920 (29481) | 29481..29903 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| GJE15_RS24925 (29900) | 29900..30091 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| GJE15_RS24930 (31129) | 31129..31359 | + | 231 | WP_000218647.1 | hypothetical protein | - |
| GJE15_RS24935 (31411) | 31411..32772 | + | 1362 | WP_000170671.1 | DUF3560 domain-containing protein | - |
| GJE15_RS24940 (32819) | 32819..33382 | + | 564 | WP_016240496.1 | class I SAM-dependent methyltransferase | - |
| GJE15_RS26340 (33468) | 33468..33899 | - | 432 | Protein_43 | hypothetical protein | - |
| GJE15_RS24945 (34198) | 34198..34719 | + | 522 | WP_033807850.1 | single-stranded DNA-binding protein | - |
| GJE15_RS24950 (34775) | 34775..35008 | + | 234 | WP_000005971.1 | DUF905 domain-containing protein | - |
| GJE15_RS24955 (35072) | 35072..37030 | + | 1959 | WP_112324844.1 | ParB/RepB/Spo0J family partition protein | - |
| GJE15_RS24960 (37085) | 37085..37519 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| GJE15_RS24965 (37516) | 37516..38278 | + | 763 | Protein_48 | plasmid SOS inhibition protein A | - |
| GJE15_RS24970 (38256) | 38256..38435 | - | 180 | WP_001334662.1 | hypothetical protein | - |
| - (38247) | 38247..38471 | + | 225 | NuclAT_0 | - | - |
| - (38247) | 38247..38471 | + | 225 | NuclAT_0 | - | - |
| - (38247) | 38247..38471 | + | 225 | NuclAT_0 | - | - |
| - (38247) | 38247..38471 | + | 225 | NuclAT_0 | - | - |
| GJE15_RS26345 (38457) | 38457..38606 | + | 150 | Protein_50 | plasmid maintenance protein Mok | - |
| GJE15_RS24975 (38548) | 38548..38673 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| GJE15_RS24980 (38992) | 38992..39288 | - | 297 | Protein_52 | hypothetical protein | - |
| GJE15_RS24990 (39588) | 39588..39884 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| GJE15_RS24995 (39995) | 39995..40816 | + | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| GJE15_RS25000 (41113) | 41113..41703 | - | 591 | WP_000252683.1 | hypothetical protein | VF |
| GJE15_RS25005 (42036) | 42036..42419 | + | 384 | WP_001151529.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| GJE15_RS25010 (42611) | 42611..43258 | + | 648 | WP_000332523.1 | transcriptional regulator TraJ family protein | - |
| GJE15_RS25015 (43378) | 43378..43605 | + | 228 | WP_000589556.1 | conjugal transfer relaxosome protein TraY | - |
| GJE15_RS25020 (43639) | 43639..43998 | + | 360 | WP_001098994.1 | type IV conjugative transfer system pilin TraA | - |
| GJE15_RS25025 (44013) | 44013..44324 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| GJE15_RS25030 (44346) | 44346..44912 | + | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| GJE15_RS25035 (44899) | 44899..45627 | + | 729 | WP_151349815.1 | type-F conjugative transfer system secretin TraK | - |
| GJE15_RS25040 (45627) | 45627..47054 | + | 1428 | WP_154074674.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| GJE15_RS25045 (47044) | 47044..47634 | + | 591 | WP_000002784.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| GJE15_RS25050 (47621) | 47621..47941 | + | 321 | WP_012881128.1 | conjugal transfer protein TrbD | - |
| GJE15_RS25055 (47938) | 47938..48453 | + | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| GJE15_RS25060 (48588) | 48588..48809 | + | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| GJE15_RS25065 (48802) | 48802..49215 | + | 414 | WP_000549589.1 | hypothetical protein | - |
| GJE15_RS25070 (49208) | 49208..49681 | + | 474 | WP_033807958.1 | hypothetical protein | - |
| GJE15_RS25075 (49780) | 49780..49998 | + | 219 | WP_033807959.1 | hypothetical protein | - |
| GJE15_RS25080 (50026) | 50026..50373 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| GJE15_RS25085 (50499) | 50499..53129 | + | 2631 | WP_000069772.1 | type IV secretion system protein TraC | - |
| GJE15_RS25090 (53126) | 53126..53512 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| GJE15_RS25095 (53509) | 53509..54141 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| GJE15_RS25100 (54138) | 54138..55130 | + | 993 | WP_000830849.1 | conjugal transfer pilus assembly protein TraU | - |
| GJE15_RS25105 (55160) | 55160..55465 | + | 306 | WP_000224418.1 | hypothetical protein | - |
| GJE15_RS25110 (55474) | 55474..56112 | + | 639 | WP_033807960.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| GJE15_RS25115 (56109) | 56109..56489 | + | 381 | WP_001462111.1 | hypothetical protein | - |
| GJE15_RS25120 (56725) | 56725..58629 | + | 1905 | WP_225620370.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| GJE15_RS25125 (58656) | 58656..58913 | + | 258 | WP_033807961.1 | conjugal transfer protein TrbE | - |
| GJE15_RS25130 (58906) | 58906..59649 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| GJE15_RS25135 (59663) | 59663..60004 | + | 342 | WP_000556795.1 | conjugal transfer protein TrbA | - |
| GJE15_RS25140 (59985) | 59985..60320 | - | 336 | WP_001620807.1 | hypothetical protein | - |
| GJE15_RS25145 (60401) | 60401..60685 | + | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| GJE15_RS25150 (60672) | 60672..61217 | + | 546 | WP_000059829.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| GJE15_RS25155 (61147) | 61147..61494 | + | 348 | WP_071571857.1 | P-type conjugative transfer protein TrbJ | - |
| GJE15_RS25160 (61475) | 61475..61867 | + | 393 | WP_000659962.1 | F-type conjugal transfer protein TrbF | - |
| GJE15_RS25165 (61854) | 61854..63227 | + | 1374 | WP_033807962.1 | conjugal transfer pilus assembly protein TraH | - |
| GJE15_RS25170 (63224) | 63224..66049 | + | 2826 | WP_033807963.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| GJE15_RS25175 (66046) | 66046..66555 | + | 510 | WP_000628111.1 | conjugal transfer entry exclusion protein TraS | - |
| GJE15_RS25180 (66569) | 66569..67300 | + | 732 | WP_012881123.1 | conjugal transfer complement resistance protein TraT | - |
| GJE15_RS25185 (67503) | 67503..68240 | + | 738 | WP_012881122.1 | hypothetical protein | - |
| GJE15_RS25190 (68291) | 68291..70534 | + | 2244 | WP_128867106.1 | type IV conjugative transfer system coupling protein TraD | - |
| GJE15_RS25195 (70534) | 70534..75804 | + | 5271 | WP_033807965.1 | Multifunctional conjugation protein TraI | Relaxase |
| GJE15_RS25200 (75824) | 75824..76570 | + | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| GJE15_RS25205 (76625) | 76625..77185 | + | 561 | WP_033807966.1 | fertility inhibition protein FinO | - |
| GJE15_RS25210 (77317) | 77317..77529 | + | 213 | WP_001301409.1 | ANR family transcriptional regulator | - |
| GJE15_RS25215 (77775) | 77775..78236 | + | 462 | WP_001233850.1 | thermonuclease family protein | - |
| GJE15_RS25220 (78282) | 78282..78491 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| GJE15_RS25225 (78529) | 78529..79119 | + | 591 | WP_033807967.1 | DUF2726 domain-containing protein | - |
| GJE15_RS25230 (79274) | 79274..79747 | + | 474 | WP_016240489.1 | hypothetical protein | - |
| - (79890) | 79890..79949 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (79890) | 79890..79949 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (79890) | 79890..79949 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (79890) | 79890..79949 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| GJE15_RS25235 (79994) | 79994..80143 | + | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| GJE15_RS25240 (80428) | 80428..80676 | + | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| GJE15_RS26350 (80791) | 80791..80975 | + | 185 | Protein_104 | protein CopA/IncA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|