MGE detailed information
MGE type: Prophage MGE length: 131078 bp
Accession: NZ_CP045648 Location: 895918..1026995 Organism: Staphylococcus epidermidis strain IRL01 Replicon: chromosome
Accession: NZ_CP045648 Location: 895918..1026995 Organism: Staphylococcus epidermidis strain IRL01 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFV05_RS04350 () | 891320..891781 | + | 462 | WP_002469001.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| GFV05_RS04355 () | 891762..892424 | + | 663 | WP_002468996.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | - |
| GFV05_RS04360 () | 892397..892858 | + | 462 | WP_001829994.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| GFV05_RS04365 () | 892855..893877 | + | 1023 | WP_002469005.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| GFV05_RS04370 () | 893960..895576 | - | 1617 | WP_002469004.1 | AAA family ATPase | - |
| GFV05_RS04375 () | 895918..897852 | - | 1935 | WP_100481738.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| GFV05_RS04380 () | 898199..898834 | + | 636 | WP_002468998.1 | redox-sensing transcriptional repressor Rex | - |
| GFV05_RS04385 () | 898975..899256 | + | 282 | WP_002497516.1 | PH domain-containing protein | - |
| GFV05_RS04390 () | 899343..899642 | + | 300 | Protein_813 | YeeE/YedE family protein | - |
| GFV05_RS04395 () | 899960..900565 | + | 606 | WP_002504807.1 | LPXTG cell wall anchor domain-containing protein | - |
| GFV05_RS04400 () | 900708..902354 | + | 1647 | WP_002504808.1 | hypothetical protein | - |
| GFV05_RS13840 () | 902493..902669 | + | 177 | WP_002504809.1 | hypothetical protein | - |
| GFV05_RS04405 () | 903049..903249 | + | 201 | WP_002504810.1 | hypothetical protein | - |
| GFV05_RS04410 () | 903325..904827 | - | 1503 | WP_002504811.1 | N-acetylmuramoyl-L-alanine amidase | - |
| GFV05_RS04415 () | 904904..907297 | - | 2394 | WP_002504812.1 | SGNH/GDSL hydrolase family protein | - |
| GFV05_RS04420 () | 907349..907678 | - | 330 | WP_002504813.1 | phage holin | - |
| GFV05_RS04425 () | 907700..908212 | - | 513 | WP_100481737.1 | hypothetical protein | - |
| GFV05_RS04430 () | 908194..908595 | - | 402 | WP_002504815.1 | hypothetical protein | - |
| GFV05_RS04435 () | 908702..911371 | - | 2670 | WP_002504816.1 | tail fiber domain-containing protein | - |
| GFV05_RS13845 () | 911413..911580 | - | 168 | WP_002504817.1 | hypothetical protein | - |
| GFV05_RS04440 () | 911573..911947 | - | 375 | WP_002504818.1 | hypothetical protein | - |
| GFV05_RS04445 () | 911950..919995 | - | 8046 | WP_002504819.1 | hypothetical protein | - |
| GFV05_RS04450 () | 920056..922137 | - | 2082 | WP_154435911.1 | hypothetical protein | - |
| GFV05_RS04455 () | 922159..930432 | - | 8274 | Protein_828 | phage tail tape measure protein | - |
| GFV05_RS04460 () | 930529..931545 | - | 1017 | WP_002504822.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| GFV05_RS04465 () | 931561..932034 | - | 474 | WP_154435913.1 | hypothetical protein | - |
| GFV05_RS04470 () | 932034..932591 | - | 558 | WP_000700062.1 | hypothetical protein | - |
| GFV05_RS04475 () | 932675..933466 | - | 792 | WP_002504825.1 | hypothetical protein | - |
| GFV05_RS04480 () | 933505..934377 | - | 873 | WP_000391855.1 | hypothetical protein | - |
| GFV05_RS04485 () | 934383..934904 | - | 522 | WP_001177112.1 | hypothetical protein | - |
| GFV05_RS04490 () | 934894..935559 | - | 666 | WP_000384369.1 | hypothetical protein | - |
| GFV05_RS04495 () | 935563..935880 | - | 318 | WP_042742626.1 | hypothetical protein | - |
| GFV05_RS04500 () | 935870..936304 | - | 435 | WP_000134539.1 | hypothetical protein | - |
| GFV05_RS04505 () | 936322..936873 | - | 552 | WP_000985467.1 | hypothetical protein | - |
| GFV05_RS04510 () | 936948..937949 | - | 1002 | WP_002504827.1 | hypothetical protein | - |
| GFV05_RS04515 () | 937988..938428 | - | 441 | WP_154435915.1 | hypothetical protein | - |
| GFV05_RS04520 () | 938456..939835 | - | 1380 | WP_002504829.1 | hypothetical protein | - |
| GFV05_RS04525 () | 939828..941390 | - | 1563 | WP_000389594.1 | hypothetical protein | - |
| GFV05_RS04530 () | 941408..943207 | - | 1800 | WP_002504830.1 | terminase family protein | - |
| GFV05_RS04535 () | 943200..944084 | - | 885 | WP_001007716.1 | hypothetical protein | - |
| GFV05_RS04540 () | 945779..946963 | - | 1185 | WP_002504831.1 | hypothetical protein | - |
| GFV05_RS04545 () | 946972..947157 | - | 186 | WP_000057341.1 | YonK family protein | - |
| GFV05_RS04550 () | 947183..947512 | - | 330 | WP_002504832.1 | HU family DNA-binding protein | - |
| GFV05_RS04555 () | 947772..949268 | - | 1497 | WP_002504833.1 | hypothetical protein | - |
| GFV05_RS04560 () | 949404..950870 | + | 1467 | Protein_849 | AAA family ATPase | - |
| GFV05_RS04570 () | 951142..952320 | + | 1179 | WP_104832459.1 | IS110 family transposase ISSep2 | Transposase |
| GFV05_RS04575 () | 952428..953249 | + | 822 | Protein_851 | ATP-binding domain-containing protein | - |
| GFV05_RS04580 () | 953285..954160 | + | 876 | WP_002504834.1 | hypothetical protein | - |
| GFV05_RS04595 () | 958090..958374 | + | 285 | WP_002504554.1 | hypothetical protein | - |
| GFV05_RS04600 () | 958554..958769 | + | 216 | WP_002504552.1 | hypothetical protein | - |
| GFV05_RS04605 () | 958844..959104 | + | 261 | WP_010959242.1 | hypothetical protein | - |
| GFV05_RS04610 () | 959241..959630 | + | 390 | WP_010959241.1 | hypothetical protein | - |
| GFV05_RS04615 () | 959783..960442 | + | 660 | WP_002504625.1 | antirestriction protein ArdA | - |
| GFV05_RS04620 () | 960486..960809 | + | 324 | WP_002504624.1 | hypothetical protein | - |
| GFV05_RS04625 () | 960902..961165 | + | 264 | WP_002504623.1 | hypothetical protein | - |
| GFV05_RS04630 () | 961194..961874 | + | 681 | WP_010959240.1 | hypothetical protein | - |
| GFV05_RS04635 () | 961990..962442 | + | 453 | WP_010959239.1 | hypothetical protein | - |
| GFV05_RS04640 () | 962442..962963 | + | 522 | WP_012099556.1 | hypothetical protein | - |
| GFV05_RS04645 () | 963041..963469 | + | 429 | WP_002504685.1 | hypothetical protein | - |
| GFV05_RS04650 () | 964153..965196 | + | 1044 | WP_002504683.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| GFV05_RS04655 () | 965484..966764 | + | 1281 | WP_002504682.1 | hypothetical protein | - |
| GFV05_RS04660 () | 966776..967780 | + | 1005 | WP_002504681.1 | hypothetical protein | - |
| GFV05_RS04665 () | 967940..968188 | + | 249 | WP_002504680.1 | hypothetical protein | - |
| GFV05_RS04670 () | 968204..968692 | + | 489 | WP_002504679.1 | hypothetical protein | - |
| GFV05_RS04675 () | 968710..969390 | + | 681 | WP_000668931.1 | hypothetical protein | - |
| GFV05_RS04680 () | 969434..970393 | + | 960 | WP_154435916.1 | hypothetical protein | - |
| GFV05_RS04685 () | 970517..971485 | + | 969 | WP_002504678.1 | ATP-binding protein | - |
| GFV05_RS04690 () | 971562..972080 | + | 519 | WP_002504677.1 | hypothetical protein | - |
| GFV05_RS04695 () | 972102..973634 | + | 1533 | WP_002504676.1 | replicative DNA helicase | - |
| GFV05_RS04700 () | 973651..974763 | + | 1113 | WP_154435918.1 | hypothetical protein | - |
| GFV05_RS04705 () | 974766..976532 | + | 1767 | WP_010959235.1 | single-stranded DNA-binding protein | - |
| GFV05_RS04710 () | 976725..977099 | + | 375 | Protein_876 | MBL fold metallo-hydrolase | - |
| GFV05_RS04715 () | 977154..977828 | - | 675 | WP_154435920.1 | IS6 family transposase IS257R2 | Transposase |
| GFV05_RS04720 () | 977942..978898 | + | 957 | WP_100502339.1 | thymidylate synthase | - |
| GFV05_RS04725 () | 978940..979443 | + | 504 | WP_042742622.1 | trimethoprim-resistant dihydrofolate reductase DfrC | - |
| GFV05_RS04730 () | 979521..980693 | + | 1173 | WP_000195429.1 | IS256 family transposase IS256 | Transposase |
| GFV05_RS04735 () | 980751..981143 | + | 393 | WP_000393259.1 | GNAT family N-acetyltransferase | - |
| GFV05_RS04740 () | 981144..982583 | + | 1440 | WP_001028141.1 | Bifunctional AAC/APH | ARG |
| GFV05_RS04745 () | 982713..983885 | - | 1173 | WP_000195429.1 | IS256 family transposase IS256 | Transposase |
| GFV05_RS04750 () | 984010..984408 | + | 399 | Protein_884 | DegV family protein | - |
| GFV05_RS04755 () | 984464..985138 | - | 675 | WP_001106022.1 | IS6 family transposase IS257R1 | Transposase |
| GFV05_RS04760 () | 985182..986228 | + | 1047 | WP_002504581.1 | hypothetical protein | - |
| GFV05_RS04765 () | 986239..986436 | + | 198 | WP_002504580.1 | hypothetical protein | - |
| GFV05_RS04770 () | 986449..986724 | + | 276 | WP_002504579.1 | hypothetical protein | - |
| GFV05_RS04775 () | 987016..987324 | + | 309 | WP_002504577.1 | hypothetical protein | - |
| GFV05_RS04780 () | 987327..987590 | + | 264 | WP_000312937.1 | hypothetical protein | - |
| GFV05_RS04785 () | 987630..988040 | + | 411 | WP_002504576.1 | hypothetical protein | - |
| GFV05_RS04790 () | 988037..988384 | + | 348 | WP_000862563.1 | thermonuclease family protein | - |
| GFV05_RS04795 () | 988390..988614 | + | 225 | WP_000359469.1 | hypothetical protein | - |
| GFV05_RS04800 () | 988636..988875 | + | 240 | WP_002504575.1 | hypothetical protein | - |
| GFV05_RS04805 () | 988898..989173 | + | 276 | WP_002504574.1 | hypothetical protein | - |
| GFV05_RS04810 () | 989195..989461 | + | 267 | WP_002504573.1 | hypothetical protein | - |
| GFV05_RS04815 () | 989466..989669 | + | 204 | WP_002504572.1 | hypothetical protein | - |
| GFV05_RS04820 () | 989676..989864 | + | 189 | WP_002504571.1 | Lar family restriction alleviation protein | - |
| GFV05_RS04825 () | 989866..990348 | + | 483 | WP_002504570.1 | hypothetical protein | - |
| GFV05_RS04830 () | 990364..990543 | + | 180 | WP_002504569.1 | hypothetical protein | - |
| GFV05_RS04835 () | 990528..990713 | + | 186 | WP_001187008.1 | hypothetical protein | - |
| GFV05_RS04840 () | 990729..991013 | + | 285 | WP_002504568.1 | hypothetical protein | - |
| GFV05_RS04845 () | 991010..991165 | + | 156 | WP_002504567.1 | transcriptional activator RinB | - |
| GFV05_RS04850 () | 991191..991463 | + | 273 | WP_002504566.1 | hypothetical protein | - |
| GFV05_RS04855 () | 991479..992021 | + | 543 | WP_002504565.1 | hypothetical protein | - |
| GFV05_RS13850 () | 992014..992190 | + | 177 | WP_002504564.1 | hypothetical protein | - |
| GFV05_RS04860 () | 992210..992431 | + | 222 | WP_002504563.1 | hypothetical protein | - |
| GFV05_RS04865 () | 992431..993156 | + | 726 | WP_010959229.1 | metallophosphoesterase | - |
| GFV05_RS04870 () | 993149..993466 | + | 318 | WP_002504561.1 | hypothetical protein | - |
| GFV05_RS04875 () | 993466..994116 | + | 651 | WP_002504560.1 | hypothetical protein | - |
| GFV05_RS04880 () | 994116..994634 | + | 519 | WP_002504559.1 | metallophosphoesterase | - |
| GFV05_RS04885 () | 994797..995027 | + | 231 | WP_002504558.1 | addiction module antitoxin | Antitoxin Detail |
| GFV05_RS04890 () | 995027..995422 | + | 396 | WP_002504557.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| GFV05_RS04895 () | 995725..995916 | + | 192 | WP_002504556.1 | hypothetical protein | - |
| GFV05_RS04900 () | 995900..996169 | + | 270 | WP_000755772.1 | hypothetical protein | - |
| GFV05_RS04905 () | 996226..996720 | + | 495 | WP_010959224.1 | hypothetical protein | - |
| GFV05_RS04910 () | 996724..997524 | + | 801 | WP_000686449.1 | metallophosphoesterase | - |
| GFV05_RS04915 () | 997633..998355 | + | 723 | WP_002504538.1 | hypothetical protein | - |
| GFV05_RS04920 () | 998461..999102 | + | 642 | WP_002504537.1 | hypothetical protein | - |
| GFV05_RS04925 () | 999350..999754 | - | 405 | WP_002504535.1 | YolD-like family protein | - |
| GFV05_RS04930 () | 1000107..1000667 | - | 561 | WP_002504534.1 | hypothetical protein | - |
| GFV05_RS04935 () | 1000834..1001208 | + | 375 | WP_002504533.1 | hypothetical protein | - |
| GFV05_RS04940 () | 1001221..1002669 | + | 1449 | WP_010959223.1 | PHP domain-containing protein | - |
| GFV05_RS04945 () | 1003132..1005618 | + | 2487 | WP_154435922.1 | hypothetical protein | - |
| GFV05_RS04950 () | 1005730..1006110 | + | 381 | WP_002504530.1 | hypothetical protein | - |
| GFV05_RS04955 () | 1006248..1006562 | + | 315 | WP_002504529.1 | hypothetical protein | - |
| GFV05_RS04960 () | 1006572..1007870 | + | 1299 | WP_010959221.1 | ATP-dependent DNA ligase | - |
| GFV05_RS04965 () | 1007958..1008347 | + | 390 | WP_002504527.1 | hypothetical protein | - |
| GFV05_RS13855 () | 1008461..1008634 | + | 174 | WP_000119719.1 | hypothetical protein | - |
| GFV05_RS04970 () | 1008646..1008912 | + | 267 | WP_002504526.1 | hypothetical protein | - |
| GFV05_RS04975 () | 1008905..1009192 | + | 288 | WP_002504525.1 | hypothetical protein | - |
| GFV05_RS04980 () | 1009173..1009496 | + | 324 | WP_002504524.1 | hypothetical protein | - |
| GFV05_RS04985 () | 1009502..1009753 | + | 252 | WP_000865652.1 | hypothetical protein | - |
| GFV05_RS04990 () | 1009753..1009935 | + | 183 | WP_002504522.1 | hypothetical protein | - |
| GFV05_RS04995 () | 1009950..1010561 | + | 612 | WP_002504521.1 | nucleoside 2-deoxyribosyltransferase | - |
| GFV05_RS05000 () | 1010554..1010745 | + | 192 | WP_002504520.1 | hypothetical protein | - |
| GFV05_RS05005 () | 1010735..1011421 | + | 687 | WP_154435924.1 | methyltransferase domain-containing protein | - |
| GFV05_RS05010 () | 1011436..1012434 | + | 999 | WP_000598581.1 | DNA cytosine methyltransferase | - |
| GFV05_RS05015 () | 1012467..1012820 | + | 354 | WP_000792728.1 | hypothetical protein | - |
| GFV05_RS05020 () | 1012823..1013005 | + | 183 | WP_000356944.1 | hypothetical protein | - |
| GFV05_RS05025 () | 1013019..1013249 | + | 231 | WP_000824898.1 | hypothetical protein | - |
| GFV05_RS05030 () | 1013249..1013845 | + | 597 | WP_002504517.1 | hypothetical protein | - |
| GFV05_RS05035 () | 1013971..1014480 | + | 510 | WP_002504516.1 | siphovirus Gp157 family protein | - |
| GFV05_RS05040 () | 1014492..1015193 | + | 702 | WP_002504515.1 | hypothetical protein | - |
| GFV05_RS13860 () | 1015212..1015364 | + | 153 | WP_002504514.1 | hypothetical protein | - |
| GFV05_RS05045 () | 1015394..1015807 | + | 414 | WP_002504513.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| GFV05_RS05050 () | 1015807..1016253 | + | 447 | WP_002504512.1 | hypothetical protein | - |
| GFV05_RS05055 () | 1016275..1019184 | + | 2910 | WP_002504511.1 | intein-containing class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| GFV05_RS05060 () | 1019338..1020162 | + | 825 | WP_002504510.1 | NUMOD4 motif-containing HNH endonuclease | - |
| GFV05_RS05065 () | 1020353..1020709 | + | 357 | WP_071813268.1 | ribonucleoside-diphosphate reductase | - |
| GFV05_RS05070 () | 1020755..1021777 | + | 1023 | WP_002504509.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| GFV05_RS05075 () | 1021805..1022407 | + | 603 | WP_002504508.1 | AAA family ATPase | - |
| GFV05_RS05080 () | 1022448..1022696 | + | 249 | WP_002504507.1 | thioredoxin family protein | - |
| GFV05_RS05085 () | 1022712..1022951 | + | 240 | WP_002504506.1 | hypothetical protein | - |
| GFV05_RS05090 () | 1022964..1023710 | + | 747 | WP_002504505.1 | NTP pyrophosphohydrolase | - |
| GFV05_RS05095 () | 1023712..1024107 | + | 396 | WP_002504504.1 | hypothetical protein | - |
| GFV05_RS05100 () | 1024091..1024684 | + | 594 | WP_001130902.1 | RusA family crossover junction endodeoxyribonuclease | - |
| GFV05_RS05105 () | 1024886..1025467 | + | 582 | WP_002504503.1 | DNA-binding protein | - |
| GFV05_RS05110 () | 1025457..1026995 | + | 1539 | WP_001260014.1 | hypothetical protein ; Integrase | Integrase |
| GFV05_RS05115 () | 1027070..1027825 | + | 756 | Protein_960 | YeeE/YedE family protein | - |
| GFV05_RS05120 () | 1027877..1028101 | + | 225 | WP_002469006.1 | sulfurtransferase TusA family protein | - |
| GFV05_RS05125 () | 1028535..1029785 | + | 1251 | WP_002477475.1 | ammonium transporter | - |
| GFV05_RS05130 () | 1029921..1030874 | + | 954 | WP_002468995.1 | LacI family DNA-binding transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Staphylococcus epidermidis isolate BPH0662 | Prophage | TA10179 | NZ_LT571449 | 1774530..1906238 | 0.001 |