MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 101286 bp
Accession: NZ_CP045571 Location: 543342..644627 Organism: Acidithiobacillus thiooxidans ATCC 19377 Replicon: chromosome
Accession: NZ_CP045571 Location: 543342..644627 Organism: Acidithiobacillus thiooxidans ATCC 19377 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GCD22_RS02895 () | 538512..538709 | + | 198 | WP_010641739.1 | 50S ribosomal protein L35 | - |
| GCD22_RS02900 () | 538728..539087 | + | 360 | WP_010641740.1 | 50S ribosomal protein L20 | - |
| GCD22_RS02905 () | 539108..540130 | + | 1023 | WP_031572477.1 | phenylalanine--tRNA ligase subunit alpha | - |
| GCD22_RS02910 () | 540143..542536 | + | 2394 | WP_031572476.1 | phenylalanine--tRNA ligase subunit beta | - |
| GCD22_RS02915 () | 542549..542848 | + | 300 | WP_024893611.1 | integration host factor subunit alpha | - |
| GCD22_RS02920 () | 542823..543275 | + | 453 | WP_010641744.1 | MerR family transcriptional regulator | - |
| GCD22_RS02930 () | 543402..544433 | - | 1032 | WP_153940368.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| GCD22_RS02935 () | 544420..544659 | - | 240 | WP_153940369.1 | DUF4224 domain-containing protein | - |
| GCD22_RS02940 () | 544752..545015 | - | 264 | WP_153940370.1 | hypothetical protein | - |
| GCD22_RS02945 () | 545215..545448 | - | 234 | WP_031572472.1 | hypothetical protein | - |
| GCD22_RS02950 () | 545630..546445 | - | 816 | WP_211371683.1 | S24 family peptidase | - |
| GCD22_RS02955 () | 546444..546668 | + | 225 | WP_153940371.1 | helix-turn-helix domain-containing protein | - |
| GCD22_RS02960 () | 546717..547781 | + | 1065 | WP_153940372.1 | DUF1376 domain-containing protein | - |
| GCD22_RS02965 () | 547798..548652 | + | 855 | WP_153940897.1 | ATP-binding protein | - |
| GCD22_RS02970 () | 548649..549848 | + | 1200 | WP_153940373.1 | hypothetical protein | - |
| GCD22_RS02975 () | 549845..550735 | + | 891 | WP_153940374.1 | DNA adenine methylase | - |
| GCD22_RS02980 () | 551077..553002 | - | 1926 | WP_153940375.1 | ATP-dependent helicase | - |
| GCD22_RS02985 () | 552999..554885 | - | 1887 | WP_211371710.1 | AAA family ATPase | - |
| GCD22_RS02990 () | 555014..556276 | + | 1263 | WP_153940376.1 | IS256 family transposase ISAfe2 | Transposase |
| GCD22_RS02995 () | 556283..556747 | - | 465 | WP_211371684.1 | AAA family ATPase | - |
| GCD22_RS03000 () | 556855..557937 | - | 1083 | WP_211371685.1 | DUF262 domain-containing protein | - |
| GCD22_RS03005 () | 557934..558944 | - | 1011 | WP_153940377.1 | adenine-specific methyltransferase EcoRI family protein | - |
| GCD22_RS03010 () | 559274..559609 | - | 336 | WP_075322251.1 | hypothetical protein | - |
| GCD22_RS17870 () | 559771..559977 | - | 207 | WP_031571694.1 | hypothetical protein | - |
| GCD22_RS03015 () | 560002..560898 | - | 897 | WP_031571692.1 | hypothetical protein | - |
| GCD22_RS03020 () | 561160..561594 | + | 435 | WP_031571690.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| GCD22_RS03025 () | 561714..562178 | - | 465 | WP_031571688.1 | helix-turn-helix domain-containing protein | - |
| GCD22_RS03030 () | 562338..562937 | + | 600 | WP_080707783.1 | hypothetical protein | - |
| GCD22_RS03035 () | 562927..563898 | + | 972 | WP_080707782.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| GCD22_RS03040 () | 564036..569186 | + | 5151 | WP_153940378.1 | DUF3560 domain-containing protein | - |
| GCD22_RS03045 () | 569247..570443 | + | 1197 | WP_153940379.1 | hypothetical protein | - |
| GCD22_RS03050 () | 570440..570718 | + | 279 | WP_153940380.1 | hypothetical protein | - |
| GCD22_RS03055 () | 570729..571100 | + | 372 | WP_153940381.1 | hypothetical protein | - |
| GCD22_RS03060 () | 571123..572067 | + | 945 | WP_153940382.1 | hypothetical protein | - |
| GCD22_RS03065 () | 572132..572923 | + | 792 | WP_153940383.1 | hypothetical protein | - |
| GCD22_RS03070 () | 572923..574473 | + | 1551 | WP_153940899.1 | relaxase/mobilization nuclease domain-containing protein | - |
| GCD22_RS03075 () | 574753..575049 | + | 297 | WP_153940384.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GCD22_RS03080 () | 575053..575352 | + | 300 | WP_012536655.1 | putative addiction module antidote protein | Antitoxin Detail |
| GCD22_RS03085 () | 575452..575766 | + | 315 | WP_153940385.1 | hypothetical protein | - |
| GCD22_RS03090 () | 575918..576370 | + | 453 | WP_153940386.1 | hypothetical protein | - |
| GCD22_RS03095 () | 576367..577335 | + | 969 | WP_153940387.1 | Type IV secretion system protein VirB11 | VF |
| GCD22_RS03100 () | 577378..577785 | - | 408 | WP_153940388.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| GCD22_RS03105 () | 577782..577979 | - | 198 | WP_153940389.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| GCD22_RS03110 () | 578261..578647 | + | 387 | WP_153940390.1 | TrbC/VirB2 family protein | - |
| GCD22_RS03115 () | 578651..579028 | + | 378 | WP_153940391.1 | VirB3 family type IV secretion system protein | - |
| GCD22_RS03120 () | 579028..581562 | + | 2535 | WP_153940392.1 | conjugal transfer protein TrbE | - |
| GCD22_RS03125 () | 581565..581795 | + | 231 | Protein_603 | hypothetical protein | - |
| GCD22_RS03130 () | 582793..583533 | + | 741 | WP_031575548.1 | P-type conjugative transfer protein TrbJ | - |
| GCD22_RS03135 () | 583545..583799 | + | 255 | WP_031575552.1 | EexN family lipoprotein | - |
| GCD22_RS03140 () | 583813..585585 | + | 1773 | WP_153940393.1 | P-type conjugative transfer protein TrbL | - |
| GCD22_RS03145 () | 585578..586054 | + | 477 | WP_153940394.1 | hypothetical protein | - |
| GCD22_RS03150 () | 586235..586864 | + | 630 | WP_170286682.1 | SocA family protein | - |
| GCD22_RS03155 () | 587509..588549 | - | 1041 | WP_153940396.1 | IS5 family transposase ISPmar3 | Transposase |
| GCD22_RS03160 () | 588534..588923 | - | 390 | WP_153940397.1 | putative addiction module antidote protein | - |
| GCD22_RS03165 () | 588931..589227 | - | 297 | WP_075324072.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GCD22_RS03170 () | 589448..589852 | + | 405 | WP_153940398.1 | hypothetical protein | - |
| GCD22_RS03175 () | 589845..590333 | - | 489 | WP_153940399.1 | hypothetical protein | - |
| GCD22_RS03180 () | 590915..591583 | + | 669 | WP_031575572.1 | type IV secretion system protein | - |
| GCD22_RS03185 () | 591596..592771 | + | 1176 | WP_031575575.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| GCD22_RS03190 () | 592773..593774 | + | 1002 | WP_153940400.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| GCD22_RS03195 () | 593777..595192 | + | 1416 | WP_031575578.1 | Type IV secretion system protein virB10 | VF |
| GCD22_RS03200 () | 595203..595505 | + | 303 | WP_153940401.1 | hypothetical protein | - |
| GCD22_RS03205 () | 595502..596143 | + | 642 | WP_153940402.1 | Type IV secretion system protein virB1 | VF |
| GCD22_RS03210 () | 596154..598604 | + | 2451 | WP_153940403.1 | Conjugal transfer protein TraG | VF |
| GCD22_RS03215 () | 598579..598830 | + | 252 | Protein_621 | SAM-dependent DNA methyltransferase | - |
| GCD22_RS03220 () | 598883..599323 | + | 441 | WP_031575594.1 | ribonuclease HI | - |
| GCD22_RS03225 () | 599400..600389 | + | 990 | WP_153940404.1 | hypothetical protein | - |
| GCD22_RS03230 () | 601206..605198 | + | 3993 | WP_153940900.1 | putative signaling protein | VF |
| GCD22_RS03235 () | 606378..606935 | - | 558 | WP_153940405.1 | hypothetical protein | - |
| GCD22_RS03240 () | 606997..607875 | - | 879 | WP_153940406.1 | hypothetical protein | - |
| GCD22_RS03245 () | 607845..608258 | - | 414 | WP_153940407.1 | hypothetical protein | - |
| GCD22_RS03250 () | 608306..608572 | - | 267 | WP_153940901.1 | hypothetical protein | - |
| GCD22_RS03255 () | 608682..611093 | - | 2412 | WP_153940408.1 | DUF2309 domain-containing protein | - |
| GCD22_RS03260 () | 611090..612784 | - | 1695 | WP_153940409.1 | NADH-quinone oxidoreductase subunit L | - |
| GCD22_RS03265 () | 612945..613916 | - | 972 | WP_153940410.1 | LysR family transcriptional regulator | - |
| GCD22_RS03270 () | 613933..614325 | - | 393 | WP_153940411.1 | hypothetical protein | - |
| GCD22_RS03275 () | 614710..615759 | + | 1050 | WP_153940412.1 | dihydroorotase | - |
| GCD22_RS03280 () | 616041..616304 | - | 264 | Protein_634 | hypothetical protein | - |
| GCD22_RS03285 () | 616517..616777 | + | 261 | WP_012537639.1 | prevent-host-death protein | - |
| GCD22_RS03290 () | 616767..617192 | + | 426 | WP_153940413.1 | hypothetical protein | - |
| GCD22_RS03295 () | 617861..618910 | - | 1050 | WP_153940414.1 | IS5 family transposase ISCARN8 | Transposase |
| GCD22_RS03300 () | 619519..620515 | + | 997 | Protein_638 | PQQ-binding-like beta-propeller repeat protein | - |
| GCD22_RS03305 () | 620583..620771 | + | 189 | WP_211371686.1 | hypothetical protein | - |
| GCD22_RS18120 () | 620768..624115 | + | 3348 | WP_211371687.1 | putative signaling protein | VF |
| GCD22_RS03335 () | 624073..624831 | - | 759 | WP_065975116.1 | IS21 family transposase ISAfe12 | Transposase |
| GCD22_RS03340 () | 624849..626369 | - | 1521 | WP_070114524.1 | IS21 family transposase ISAfe12 | Transposase |
| GCD22_RS03345 () | 626419..627360 | + | 942 | WP_153940416.1 | putative signaling protein | VF |
| GCD22_RS03350 () | 627957..629201 | - | 1245 | WP_153940417.1 | ParB/RepB/Spo0J family partition protein | - |
| GCD22_RS03355 () | 629203..629973 | - | 771 | WP_153940418.1 | ParA family protein | - |
| GCD22_RS03360 () | 629976..630371 | - | 396 | WP_031575425.1 | hypothetical protein | - |
| GCD22_RS03365 () | 630466..631119 | - | 654 | WP_153940419.1 | S26 family signal peptidase | - |
| GCD22_RS03370 () | 631091..631303 | - | 213 | WP_080707873.1 | hypothetical protein | - |
| GCD22_RS03375 () | 631266..631559 | - | 294 | WP_153940420.1 | hypothetical protein | - |
| GCD22_RS03380 () | 631607..632977 | - | 1371 | WP_153940421.1 | conjugal transfer protein TraB | - |
| GCD22_RS03385 () | 632974..633567 | - | 594 | WP_153940422.1 | hypothetical protein | - |
| GCD22_RS03390 () | 633752..634048 | + | 297 | Protein_652 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GCD22_RS03395 () | 634051..634347 | + | 297 | WP_075324056.1 | putative addiction module antidote protein | - |
| GCD22_RS03400 () | 634809..635492 | - | 684 | WP_031575411.1 | hypothetical protein | - |
| GCD22_RS03405 () | 636111..638162 | - | 2052 | WP_153940423.1 | DNA topoisomerase 3 | - |
| GCD22_RS03410 () | 638685..639605 | + | 921 | WP_153940424.1 | retron St85 family effector protein | - |
| GCD22_RS03415 () | 639602..640540 | + | 939 | WP_153940425.1 | retron St85 family RNA-directed DNA polymerase | - |
| GCD22_RS03420 () | 640731..641993 | + | 1263 | Protein_658 | IS256 family transposase ISAfe2 | Transposase |
| GCD22_RS03425 () | 643194..643499 | - | 306 | WP_031575399.1 | hypothetical protein | - |
| GCD22_RS17895 () | 643729..643902 | + | 174 | WP_170286687.1 | hypothetical protein | - |
| GCD22_RS03430 () | 643889..644419 | + | 531 | WP_153940426.1 | hypothetical protein | - |
| GCD22_RS03435 () | 644701..645189 | + | 489 | WP_140390914.1 | DUF2442 domain-containing protein | - |
| GCD22_RS03440 () | 645217..645471 | - | 255 | WP_010641842.1 | Txe/YoeB family addiction module toxin | - |
| GCD22_RS03445 () | 645468..645719 | - | 252 | WP_010641843.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| GCD22_RS03450 () | 645862..647922 | - | 2061 | WP_081576824.1 | transglycosylase domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|