MGE detailed information
MGE type: Genomic_island MGE length: 19745 bp
Accession: NZ_CP044158 Location: 3875029..3894773 Organism: Shigella flexneri strain AR-0423 Replicon: chromosome
Accession: NZ_CP044158 Location: 3875029..3894773 Organism: Shigella flexneri strain AR-0423 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V35_RS20050 (3871161) | 3871161..3872105 | + | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
| F4V35_RS20055 (3872102) | 3872102..3872935 | + | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| F4V35_RS20060 (3872935) | 3872935..3873699 | + | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| F4V35_RS20065 (3873696) | 3873696..3874502 | + | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| F4V35_RS20070 (3874508) | 3874508..3874909 | + | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| F4V35_RS20075 (3875029) | 3875029..3875388 | - | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| F4V35_RS20080 (3875385) | 3875385..3875660 | - | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| F4V35_RS20085 (3875719) | 3875719..3876843 | - | 1125 | WP_001216257.1 | ABC transporter permease | - |
| F4V35_RS20090 (3876843) | 3876843..3879578 | - | 2736 | WP_000149170.1 | ribosome-associated ATPase/putative transporter RbbA | - |
| F4V35_RS20095 (3879575) | 3879575..3880642 | - | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| F4V35_RS25925 (3880705) | 3880705..3880818 | - | 114 | WP_001296785.1 | protein YhiY | - |
| F4V35_RS20100 (3881008) | 3881008..3882630 | - | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| F4V35_RS20105 (3882892) | 3882892..3884481 | - | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| F4V35_RS20110 (3884898) | 3884898..3885896 | + | 999 | Protein_3868 | DUF2776 domain-containing protein | - |
| F4V35_RS20115 (3885983) | 3885983..3886459 | - | 477 | WP_000182502.1 | hypothetical protein | - |
| F4V35_RS20120 (3886452) | 3886452..3887216 | - | 765 | WP_000442140.1 | winged helix-turn-helix domain-containing protein | - |
| F4V35_RS20125 (3887462) | 3887462..3888223 | + | 762 | Protein_3871 | LuxR C-terminal-related transcriptional regulator | - |
| F4V35_RS20130 (3888330) | 3888330..3888842 | - | 513 | WP_000751953.1 | hypothetical protein | - |
| F4V35_RS20135 (3888981) | 3888981..3890129 | - | 1149 | WP_005052604.1 | fimbria/pilus outer membrane usher protein | - |
| F4V35_RS20140 (3890221) | 3890221..3891449 | + | 1229 | WP_167547300.1 | IS3-like element IS2 family transposase | - |
| F4V35_RS20150 (3891688) | 3891688..3892767 | - | 1080 | WP_005052551.1 | fimbria/pilus outer membrane usher protein | - |
| F4V35_RS20155 (3892811) | 3892811..3893572 | - | 762 | WP_005090407.1 | fimbria/pilus periplasmic chaperone | - |
| F4V35_RS20160 (3894039) | 3894039..3894773 | - | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| F4V35_RS20165 (3894773) | 3894773..3895927 | - | 1155 | WP_232111812.1 | O-antigen ligase family protein | - |
| F4V35_RS20170 (3896063) | 3896063..3896355 | + | 293 | Protein_3879 | transposase | - |
| F4V35_RS20180 (3897599) | 3897599..3898798 | - | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.003 |