MGE detailed information
MGE type: Prophage MGE length: 14003 bp
Accession: NZ_CP044158 Location: 1871994..1885996 Organism: Shigella flexneri strain AR-0423 Replicon: chromosome
Accession: NZ_CP044158 Location: 1871994..1885996 Organism: Shigella flexneri strain AR-0423 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V35_RS09690 (1867836) | 1867836..1868600 | - | 765 | WP_000692136.1 | electron transfer flavoprotein | - |
| F4V35_RS09695 (1868920) | 1868920..1869399 | + | 480 | Protein_1874 | cupin domain-containing protein | - |
| F4V35_RS09700 (1869454) | 1869454..1870151 | + | 698 | WP_227804325.1 | IS1 family transposase | - |
| F4V35_RS09705 (1870145) | 1870145..1870312 | - | 168 | WP_005062520.1 | hypothetical protein | - |
| F4V35_RS09710 (1870714) | 1870714..1871475 | - | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| F4V35_RS09715 (1871543) | 1871543..1871746 | - | 204 | WP_000543395.1 | two-component system connector SafA | - |
| F4V35_RS09720 (1871994) | 1871994..1874273 | - | 2280 | WP_151101431.1 | acid resistance putative oxidoreductase YdeP | - |
| F4V35_RS09725 (1874607) | 1874607..1875356 | - | 750 | Protein_1880 | fimbrial protein | - |
| F4V35_RS09730 (1875412) | 1875412..1876109 | + | 698 | WP_223368647.1 | IS1 family transposase | - |
| F4V35_RS09735 (1876127) | 1876127..1877005 | + | 879 | Protein_1882 | IS3-like element IS600 family transposase | - |
| F4V35_RS09740 (1877030) | 1877030..1877209 | - | 180 | WP_000372594.1 | class II holin family protein | - |
| F4V35_RS25285 (1877359) | 1877359..1877520 | - | 162 | WP_001323614.1 | hypothetical protein | - |
| F4V35_RS09745 (1877520) | 1877520..1877705 | - | 186 | Protein_1885 | DUF1737 domain-containing protein | - |
| F4V35_RS09750 (1877965) | 1877965..1878300 | + | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| F4V35_RS09755 (1878581) | 1878581..1878689 | - | 109 | Protein_1887 | DUF3927 family protein | - |
| F4V35_RS09775 (1879610) | 1879610..1880431 | - | 822 | WP_000762882.1 | antitermination protein | - |
| F4V35_RS09780 (1880454) | 1880454..1880801 | - | 348 | WP_151101433.1 | RusA family crossover junction endodeoxyribonuclease | - |
| F4V35_RS09785 (1880814) | 1880814..1881863 | - | 1050 | WP_001265249.1 | DUF968 domain-containing protein | - |
| F4V35_RS09790 (1881865) | 1881865..1882143 | - | 279 | Protein_1891 | hypothetical protein | - |
| F4V35_RS09795 (1882210) | 1882210..1882461 | - | 252 | WP_000980987.1 | protein Rem | - |
| F4V35_RS09800 (1882679) | 1882679..1882834 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| F4V35_RS09805 (1882906) | 1882906..1883193 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| F4V35_RS09810 (1883193) | 1883193..1883432 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| F4V35_RS09815 (1883457) | 1883457..1883762 | + | 306 | WP_071818640.1 | hypothetical protein | - |
| F4V35_RS09820 (1883759) | 1883759..1884915 | - | 1157 | Protein_1897 | IS3 family transposase | - |
| F4V35_RS09825 (1884977) | 1884977..1885996 | + | 1020 | Protein_1898 | MHS family MFS transporter YdfJ | - |
| F4V35_RS09830 (1886085) | 1886085..1887545 | + | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| F4V35_RS09835 (1887581) | 1887581..1887784 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| F4V35_RS09840 (1887961) | 1887961..1888647 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| F4V35_RS09845 (1888736) | 1888736..1889482 | - | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120372 | NZ_CP037923 | 1629251..1643278 | 0.003 |