MGE detailed information
MGE type: Genomic_island MGE length: 21335 bp
Accession: NZ_CP044155 Location: 1840975..1862309 Organism: Shigella flexneri strain AR-0424 Replicon: chromosome
Accession: NZ_CP044155 Location: 1840975..1862309 Organism: Shigella flexneri strain AR-0424 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V36_RS09435 (1837107) | 1837107..1838051 | + | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
| F4V36_RS09440 (1838048) | 1838048..1838881 | + | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| F4V36_RS09445 (1838881) | 1838881..1839645 | + | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| F4V36_RS09450 (1839642) | 1839642..1840448 | + | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| F4V36_RS09455 (1840454) | 1840454..1840855 | + | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| F4V36_RS09460 (1840975) | 1840975..1841334 | - | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| F4V36_RS09465 (1841331) | 1841331..1841606 | - | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| F4V36_RS09470 (1841665) | 1841665..1842789 | - | 1125 | WP_001216257.1 | ABC transporter permease | - |
| F4V36_RS09475 (1842789) | 1842789..1845524 | - | 2736 | WP_000149186.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| F4V36_RS09480 (1845521) | 1845521..1846588 | - | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| F4V36_RS26040 (1846651) | 1846651..1846764 | - | 114 | WP_001296785.1 | protein YhiY | - |
| F4V36_RS09485 (1846954) | 1846954..1848576 | - | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| F4V36_RS09490 (1848838) | 1848838..1850427 | - | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| F4V36_RS09495 (1850845) | 1850845..1851843 | + | 999 | Protein_1812 | DUF2776 domain-containing protein | - |
| F4V36_RS09500 (1851930) | 1851930..1852406 | - | 477 | WP_000182502.1 | hypothetical protein | - |
| F4V36_RS09505 (1852399) | 1852399..1853163 | - | 765 | WP_000442140.1 | winged helix-turn-helix domain-containing protein | - |
| F4V36_RS09510 (1853409) | 1853409..1854170 | + | 762 | Protein_1815 | Transcriptional regulatory protein RcsB | VF |
| F4V36_RS09515 (1854277) | 1854277..1854789 | - | 513 | WP_000751953.1 | hypothetical protein | - |
| F4V36_RS09520 (1854928) | 1854928..1856076 | - | 1149 | WP_005052604.1 | hypothetical protein | VF |
| F4V36_RS09525 (1856168) | 1856168..1857396 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| F4V36_RS09535 (1857635) | 1857635..1858714 | - | 1080 | WP_005052551.1 | hypothetical protein | VF |
| F4V36_RS09540 (1858758) | 1858758..1859519 | - | 762 | WP_005090407.1 | hypothetical protein | VF |
| F4V36_RS09545 (1859986) | 1859986..1860720 | - | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| F4V36_RS09550 (1860720) | 1860720..1861994 | - | 1275 | WP_005052544.1 | O-antigen ligase family protein | - |
| F4V36_RS09555 (1862010) | 1862010..1862302 | + | 293 | Protein_1823 | IS3 family transposase ISSfl10 | Transposase |
| F4V36_RS09565 (1863546) | 1863546..1864745 | - | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| F4V36_RS09570 (1864977) | 1864977..1866476 | + | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| F4V36_RS09575 (1866547) | 1866547..1866882 | - | 336 | WP_000626187.1 | universal stress protein UspB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.001 |