MGE detailed information
MGE type: Genomic_island MGE length: 21023 bp
Accession: NZ_CP044152 Location: 2856700..2877722 Organism: Shigella flexneri strain AR-0425 Replicon: chromosome
Accession: NZ_CP044152 Location: 2856700..2877722 Organism: Shigella flexneri strain AR-0425 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V37_RS14500 (2851812) | 2851812..2852147 | + | 336 | WP_000626187.1 | universal stress protein UspB | - |
| F4V37_RS14505 (2852218) | 2852218..2853717 | - | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| F4V37_RS14510 (2853949) | 2853949..2855148 | + | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| F4V37_RS14515 (2855677) | 2855677..2856374 | + | 698 | WP_227804279.1 | IS1 family transposase | - |
| F4V37_RS14520 (2856392) | 2856392..2856684 | - | 293 | Protein_2795 | transposase | - |
| F4V37_RS14525 (2856700) | 2856700..2857974 | + | 1275 | WP_151090787.1 | O-antigen ligase family protein | - |
| F4V37_RS14530 (2857974) | 2857974..2858708 | + | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| F4V37_RS14535 (2859176) | 2859176..2859937 | + | 762 | WP_151090788.1 | hypothetical protein | VF |
| F4V37_RS14540 (2859981) | 2859981..2861060 | + | 1080 | WP_005052551.1 | hypothetical protein | VF |
| F4V37_RS14555 (2862635) | 2862635..2863783 | + | 1149 | WP_005052604.1 | hypothetical protein | VF |
| F4V37_RS14560 (2863922) | 2863922..2864434 | + | 513 | WP_000751953.1 | hypothetical protein | - |
| F4V37_RS14565 (2864541) | 2864541..2865302 | - | 762 | WP_011069549.1 | Transcriptional regulatory protein RcsB | VF |
| F4V37_RS14570 (2865548) | 2865548..2866312 | + | 765 | WP_000442141.1 | winged helix-turn-helix domain-containing protein | - |
| F4V37_RS14575 (2866305) | 2866305..2866781 | + | 477 | WP_000182502.1 | hypothetical protein | - |
| F4V37_RS14580 (2866868) | 2866868..2867866 | - | 999 | Protein_2806 | DUF2776 domain-containing protein | - |
| F4V37_RS14585 (2868284) | 2868284..2869859 | + | 1576 | Protein_2807 | YhiJ/YhiL family protein | - |
| F4V37_RS14590 (2870121) | 2870121..2871743 | + | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| F4V37_RS25545 (2871933) | 2871933..2872046 | + | 114 | WP_001296785.1 | protein YhiY | - |
| F4V37_RS14595 (2872109) | 2872109..2873176 | + | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| F4V37_RS14600 (2873173) | 2873173..2875908 | + | 2736 | WP_000149170.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| F4V37_RS14605 (2875908) | 2875908..2877032 | + | 1125 | WP_001216257.1 | ABC transporter permease | - |
| F4V37_RS14610 (2877091) | 2877091..2877366 | + | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| F4V37_RS14615 (2877363) | 2877363..2877722 | + | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| F4V37_RS14620 (2877842) | 2877842..2878243 | - | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| F4V37_RS14625 (2878249) | 2878249..2879055 | - | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| F4V37_RS14630 (2879052) | 2879052..2879816 | - | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| F4V37_RS14635 (2879816) | 2879816..2880649 | - | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| F4V37_RS14640 (2880646) | 2880646..2881590 | - | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.001 |