MGE detailed information
MGE type: Prophage MGE length: 16349 bp
Accession: NZ_CP044152 Location: 260297..276645 Organism: Shigella flexneri strain AR-0425 Replicon: chromosome
Accession: NZ_CP044152 Location: 260297..276645 Organism: Shigella flexneri strain AR-0425 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V37_RS01300 (256810) | 256810..257556 | + | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| F4V37_RS01305 (257645) | 257645..258331 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| F4V37_RS01310 (258509) | 258509..258712 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| F4V37_RS01315 (258748) | 258748..260208 | - | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| F4V37_RS01320 (260297) | 260297..261316 | - | 1020 | Protein_257 | MHS family MFS transporter YdfJ | - |
| F4V37_RS01325 (261378) | 261378..262534 | + | 1157 | Protein_258 | IS3 family transposase ISSd1 | Transposase |
| F4V37_RS01330 (262531) | 262531..262836 | - | 306 | WP_071818640.1 | hypothetical protein | - |
| F4V37_RS01335 (262861) | 262861..263100 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| F4V37_RS01340 (263100) | 263100..263387 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| F4V37_RS01345 (263459) | 263459..263614 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| F4V37_RS01350 (263832) | 263832..264083 | + | 252 | WP_000980987.1 | protein Rem | - |
| F4V37_RS01355 (264150) | 264150..264428 | + | 279 | Protein_264 | hypothetical protein | - |
| F4V37_RS01360 (264430) | 264430..265479 | + | 1050 | WP_001265249.1 | DUF968 domain-containing protein | - |
| F4V37_RS01365 (265492) | 265492..265848 | + | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| F4V37_RS01370 (265863) | 265863..266684 | + | 822 | WP_000762882.1 | antitermination protein | - |
| F4V37_RS01390 (267604) | 267604..267712 | + | 109 | Protein_268 | DUF3927 family protein | - |
| F4V37_RS01395 (267993) | 267993..268328 | - | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| F4V37_RS01400 (268588) | 268588..268773 | + | 186 | Protein_270 | DUF1737 domain-containing protein | - |
| F4V37_RS24915 (268773) | 268773..268934 | + | 162 | WP_001323614.1 | hypothetical protein | - |
| F4V37_RS01405 (269084) | 269084..269263 | + | 180 | WP_000372594.1 | class II holin family protein | - |
| F4V37_RS01410 (269288) | 269288..270166 | - | 879 | Protein_273 | IS3 family transposase IS600 | Transposase |
| F4V37_RS01420 (270937) | 270937..271686 | + | 750 | Protein_275 | hypothetical protein | VF |
| F4V37_RS01425 (272020) | 272020..274299 | + | 2280 | WP_000726666.1 | acid resistance putative oxidoreductase YdeP | - |
| F4V37_RS01430 (274547) | 274547..274750 | + | 204 | WP_000543395.1 | two-component system connector SafA | - |
| F4V37_RS01435 (274818) | 274818..275579 | + | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| F4V37_RS01440 (275981) | 275981..276127 | + | 147 | Protein_279 | sulfatase | - |
| F4V37_RS01450 (276894) | 276894..277373 | - | 480 | Protein_281 | cupin domain-containing protein | - |
| F4V37_RS01455 (277693) | 277693..278457 | + | 765 | WP_000692136.1 | electron transfer flavoprotein | - |
| F4V37_RS01460 (278477) | 278477..279415 | + | 939 | WP_000080702.1 | electron transfer flavoprotein subunit alpha | - |
| F4V37_RS01465 (279471) | 279471..280760 | + | 1290 | WP_001278524.1 | FAD-dependent oxidoreductase | - |
| F4V37_RS01470 (280757) | 280757..281050 | + | 294 | WP_000081083.1 | ferredoxin family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120372 | NZ_CP037923 | 1629251..1643278 | 0.006 |